Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3240 and HP15_3241 are separated by 145 nucleotides HP15_3241 and HP15_3242 are separated by 22 nucleotides
HP15_3240: HP15_3240 - sulfate permease family protein, at 3,394,407 to 3,396,125
_3240
HP15_3241: HP15_3241 - thioredoxin-like protein, at 3,396,271 to 3,396,450
_3241
HP15_3242: HP15_3242 - ferric uptake regulator, CjrA, predicted, at 3,396,473 to 3,397,483
_3242
Position (kb)
3396
3397 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3395.337 kb on - strand, within HP15_3240 at 3395.557 kb on + strand, within HP15_3240 at 3395.565 kb on - strand, within HP15_3240 at 3395.587 kb on - strand, within HP15_3240 at 3395.639 kb on + strand, within HP15_3240 at 3395.720 kb on - strand, within HP15_3240 at 3395.843 kb on + strand, within HP15_3240 at 3395.862 kb on - strand, within HP15_3240 at 3395.872 kb on - strand, within HP15_3240 at 3395.882 kb on - strand, within HP15_3240 at 3395.984 kb on + strand at 3396.024 kb on - strand at 3396.133 kb on + strand at 3396.141 kb on - strand at 3396.262 kb on - strand at 3396.526 kb on - strand at 3396.570 kb on + strand at 3396.594 kb on + strand, within HP15_3242 at 3396.616 kb on + strand, within HP15_3242 at 3396.704 kb on + strand, within HP15_3242 at 3396.705 kb on + strand, within HP15_3242 at 3396.712 kb on - strand, within HP15_3242 at 3396.721 kb on + strand, within HP15_3242 at 3396.771 kb on + strand, within HP15_3242 at 3396.779 kb on - strand, within HP15_3242 at 3396.781 kb on + strand, within HP15_3242 at 3396.789 kb on - strand, within HP15_3242 at 3396.980 kb on + strand, within HP15_3242 at 3396.988 kb on - strand, within HP15_3242 at 3397.011 kb on + strand, within HP15_3242 at 3397.011 kb on + strand, within HP15_3242 at 3397.011 kb on + strand, within HP15_3242 at 3397.019 kb on - strand, within HP15_3242 at 3397.050 kb on + strand, within HP15_3242 at 3397.219 kb on + strand, within HP15_3242 at 3397.227 kb on - strand, within HP15_3242 at 3397.318 kb on + strand, within HP15_3242 at 3397.318 kb on - strand, within HP15_3242 at 3397.346 kb on + strand, within HP15_3242 at 3397.349 kb on - strand, within HP15_3242 at 3397.363 kb on + strand, within HP15_3242 at 3397.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,395,337 - HP15_3240 0.54 +1.4 3,395,557 + HP15_3240 0.67 +0.2 3,395,565 - HP15_3240 0.67 +1.3 3,395,587 - HP15_3240 0.69 -0.2 3,395,639 + HP15_3240 0.72 -0.4 3,395,720 - HP15_3240 0.76 -0.5 3,395,843 + HP15_3240 0.84 +1.4 3,395,862 - HP15_3240 0.85 +1.1 3,395,872 - HP15_3240 0.85 -0.2 3,395,882 - HP15_3240 0.86 +0.1 3,395,984 + -0.2 3,396,024 - +0.2 3,396,133 + +0.3 3,396,141 - -0.4 3,396,262 - +1.8 3,396,526 - +0.1 3,396,570 + -0.8 3,396,594 + HP15_3242 0.12 +1.2 3,396,616 + HP15_3242 0.14 -0.2 3,396,704 + HP15_3242 0.23 +0.1 3,396,705 + HP15_3242 0.23 +0.8 3,396,712 - HP15_3242 0.24 -0.4 3,396,721 + HP15_3242 0.25 +0.7 3,396,771 + HP15_3242 0.29 -0.4 3,396,779 - HP15_3242 0.30 -1.9 3,396,781 + HP15_3242 0.30 -1.0 3,396,789 - HP15_3242 0.31 +0.5 3,396,980 + HP15_3242 0.50 +1.0 3,396,988 - HP15_3242 0.51 -0.5 3,397,011 + HP15_3242 0.53 -0.3 3,397,011 + HP15_3242 0.53 -0.4 3,397,011 + HP15_3242 0.53 -0.6 3,397,019 - HP15_3242 0.54 -0.6 3,397,050 + HP15_3242 0.57 -0.4 3,397,219 + HP15_3242 0.74 +0.2 3,397,227 - HP15_3242 0.75 -0.4 3,397,318 + HP15_3242 0.84 -0.9 3,397,318 - HP15_3242 0.84 +0.8 3,397,346 + HP15_3242 0.86 +1.0 3,397,349 - HP15_3242 0.87 -0.2 3,397,363 + HP15_3242 0.88 +1.0 3,397,391 - +0.2
Or see this region's nucleotide sequence