Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2746 and Psest_2747 are separated by 254 nucleotides Psest_2747 and Psest_2748 are separated by 69 nucleotides Psest_2748 and Psest_2749 overlap by 4 nucleotides
Psest_2746: Psest_2746 - Protein of unknown function (DUF2855)., at 2,936,966 to 2,938,069
_2746
Psest_2747: Psest_2747 - Putative NADPH-quinone reductase (modulator of drug activity B), at 2,938,324 to 2,939,106
_2747
Psest_2748: Psest_2748 - Transcriptional regulator, at 2,939,176 to 2,940,081
_2748
Psest_2749: Psest_2749 - Predicted transcriptional regulators, at 2,940,078 to 2,940,461
_2749
Position (kb)
2938
2939
2940 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2937.356 kb on + strand, within Psest_2746 at 2937.356 kb on + strand, within Psest_2746 at 2937.357 kb on - strand, within Psest_2746 at 2937.366 kb on - strand, within Psest_2746 at 2937.586 kb on + strand, within Psest_2746 at 2937.587 kb on - strand, within Psest_2746 at 2937.587 kb on - strand, within Psest_2746 at 2937.613 kb on - strand, within Psest_2746 at 2937.613 kb on - strand, within Psest_2746 at 2937.689 kb on + strand, within Psest_2746 at 2937.717 kb on + strand, within Psest_2746 at 2937.717 kb on + strand, within Psest_2746 at 2937.718 kb on - strand, within Psest_2746 at 2937.795 kb on - strand, within Psest_2746 at 2937.839 kb on + strand, within Psest_2746 at 2937.839 kb on + strand, within Psest_2746 at 2937.928 kb on + strand, within Psest_2746 at 2937.939 kb on + strand, within Psest_2746 at 2938.020 kb on + strand at 2938.020 kb on + strand at 2938.020 kb on + strand at 2938.030 kb on + strand at 2938.030 kb on + strand at 2938.092 kb on + strand at 2938.111 kb on - strand at 2938.139 kb on - strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.579 kb on + strand, within Psest_2747 at 2938.579 kb on + strand, within Psest_2747 at 2938.579 kb on + strand, within Psest_2747 at 2938.579 kb on + strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.629 kb on - strand, within Psest_2747 at 2938.740 kb on - strand, within Psest_2747 at 2938.740 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.989 kb on - strand, within Psest_2747 at 2938.989 kb on - strand, within Psest_2747 at 2939.087 kb on + strand at 2939.088 kb on - strand at 2939.088 kb on - strand at 2939.159 kb on + strand at 2939.172 kb on + strand at 2939.354 kb on + strand, within Psest_2748 at 2939.704 kb on + strand, within Psest_2748 at 2940.072 kb on + strand at 2940.072 kb on + strand at 2940.072 kb on + strand at 2940.079 kb on + strand at 2940.079 kb on + strand at 2940.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 2,937,356 + Psest_2746 0.35 -0.4 2,937,356 + Psest_2746 0.35 -0.3 2,937,357 - Psest_2746 0.35 +0.3 2,937,366 - Psest_2746 0.36 +0.1 2,937,586 + Psest_2746 0.56 +0.7 2,937,587 - Psest_2746 0.56 +0.1 2,937,587 - Psest_2746 0.56 +1.3 2,937,613 - Psest_2746 0.59 +0.8 2,937,613 - Psest_2746 0.59 +0.0 2,937,689 + Psest_2746 0.65 -0.0 2,937,717 + Psest_2746 0.68 +1.8 2,937,717 + Psest_2746 0.68 +0.0 2,937,718 - Psest_2746 0.68 -0.7 2,937,795 - Psest_2746 0.75 +0.3 2,937,839 + Psest_2746 0.79 +0.3 2,937,839 + Psest_2746 0.79 +0.1 2,937,928 + Psest_2746 0.87 -0.9 2,937,939 + Psest_2746 0.88 -1.5 2,938,020 + -0.4 2,938,020 + +0.8 2,938,020 + +0.4 2,938,030 + +2.2 2,938,030 + +0.1 2,938,092 + +0.1 2,938,111 - +0.8 2,938,139 - +0.4 2,938,336 + -0.6 2,938,336 + +0.8 2,938,336 + +0.6 2,938,336 + -0.1 2,938,336 + +1.1 2,938,337 - -1.8 2,938,337 - +0.2 2,938,337 - +0.3 2,938,337 - +0.1 2,938,337 - +0.5 2,938,579 + Psest_2747 0.33 +0.4 2,938,579 + Psest_2747 0.33 -0.1 2,938,579 + Psest_2747 0.33 +1.8 2,938,579 + Psest_2747 0.33 +0.5 2,938,580 - Psest_2747 0.33 -1.4 2,938,580 - Psest_2747 0.33 +0.8 2,938,580 - Psest_2747 0.33 +0.8 2,938,580 - Psest_2747 0.33 +0.8 2,938,580 - Psest_2747 0.33 +0.4 2,938,629 - Psest_2747 0.39 +0.4 2,938,740 - Psest_2747 0.53 -0.7 2,938,740 - Psest_2747 0.53 +0.2 2,938,758 - Psest_2747 0.55 +1.1 2,938,758 - Psest_2747 0.55 -0.1 2,938,758 - Psest_2747 0.55 +0.1 2,938,758 - Psest_2747 0.55 -0.3 2,938,988 + Psest_2747 0.85 +0.8 2,938,988 + Psest_2747 0.85 +0.5 2,938,988 + Psest_2747 0.85 -1.4 2,938,988 + Psest_2747 0.85 +0.8 2,938,989 - Psest_2747 0.85 -1.2 2,938,989 - Psest_2747 0.85 -0.1 2,939,087 + -0.9 2,939,088 - +0.2 2,939,088 - -1.4 2,939,159 + +0.4 2,939,172 + -0.6 2,939,354 + Psest_2748 0.20 +0.4 2,939,704 + Psest_2748 0.58 +0.5 2,940,072 + +0.7 2,940,072 + +0.6 2,940,072 + +1.0 2,940,079 + +0.2 2,940,079 + +0.6 2,940,080 - +1.5
Or see this region's nucleotide sequence