Strain Fitness in Marinobacter adhaerens HP15 around HP15_2579

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2577 and HP15_2578 are separated by 110 nucleotidesHP15_2578 and HP15_2579 are separated by 15 nucleotidesHP15_2579 and HP15_2580 overlap by 4 nucleotides HP15_2577: HP15_2577 - protein containing helix-turn-helix, AraC domain, at 2,725,986 to 2,726,981 _2577 HP15_2578: HP15_2578 - conserved hypothetical protein, at 2,727,092 to 2,727,256 _2578 HP15_2579: HP15_2579 - hemolysin, at 2,727,272 to 2,728,294 _2579 HP15_2580: HP15_2580 - 2,4-dienoyl-CoA reductase, at 2,728,291 to 2,730,345 _2580 Position (kb) 2727 2728 2729Strain fitness (log2 ratio) -1 0 1 2at 2726.419 kb on + strand, within HP15_2577at 2726.512 kb on + strand, within HP15_2577at 2726.529 kb on - strand, within HP15_2577at 2726.534 kb on - strand, within HP15_2577at 2726.679 kb on + strand, within HP15_2577at 2726.738 kb on + strand, within HP15_2577at 2726.799 kb on + strand, within HP15_2577at 2726.942 kb on + strandat 2726.982 kb on + strandat 2726.992 kb on + strandat 2727.079 kb on + strandat 2727.108 kb on + strandat 2727.179 kb on - strand, within HP15_2578at 2727.258 kb on - strandat 2727.261 kb on + strandat 2727.269 kb on + strandat 2727.308 kb on + strandat 2727.538 kb on - strand, within HP15_2579at 2727.565 kb on - strand, within HP15_2579at 2727.570 kb on - strand, within HP15_2579at 2727.613 kb on + strand, within HP15_2579at 2727.658 kb on - strand, within HP15_2579at 2727.663 kb on - strand, within HP15_2579at 2727.815 kb on - strand, within HP15_2579at 2727.934 kb on + strand, within HP15_2579at 2728.217 kb on + strandat 2728.364 kb on - strandat 2728.382 kb on - strandat 2728.482 kb on - strandat 2728.510 kb on + strand, within HP15_2580at 2728.580 kb on - strand, within HP15_2580at 2728.580 kb on - strand, within HP15_2580at 2728.580 kb on - strand, within HP15_2580at 2728.723 kb on - strand, within HP15_2580at 2728.726 kb on + strand, within HP15_2580at 2728.756 kb on - strand, within HP15_2580at 2728.938 kb on + strand, within HP15_2580at 2728.966 kb on + strand, within HP15_2580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
2,726,419 + HP15_2577 0.43 +0.1
2,726,512 + HP15_2577 0.53 -0.5
2,726,529 - HP15_2577 0.55 -0.4
2,726,534 - HP15_2577 0.55 -0.1
2,726,679 + HP15_2577 0.70 +0.9
2,726,738 + HP15_2577 0.76 +0.3
2,726,799 + HP15_2577 0.82 -0.2
2,726,942 + -0.3
2,726,982 + +2.1
2,726,992 + +0.1
2,727,079 + +0.3
2,727,108 + +1.0
2,727,179 - HP15_2578 0.53 -0.2
2,727,258 - -0.3
2,727,261 + +1.0
2,727,269 + +0.6
2,727,308 + -0.1
2,727,538 - HP15_2579 0.26 -1.5
2,727,565 - HP15_2579 0.29 -0.5
2,727,570 - HP15_2579 0.29 -0.6
2,727,613 + HP15_2579 0.33 -0.6
2,727,658 - HP15_2579 0.38 -0.2
2,727,663 - HP15_2579 0.38 -0.0
2,727,815 - HP15_2579 0.53 -0.3
2,727,934 + HP15_2579 0.65 -0.2
2,728,217 + +1.1
2,728,364 - -0.8
2,728,382 - -1.6
2,728,482 - +1.2
2,728,510 + HP15_2580 0.11 -0.4
2,728,580 - HP15_2580 0.14 -0.5
2,728,580 - HP15_2580 0.14 +0.2
2,728,580 - HP15_2580 0.14 +0.8
2,728,723 - HP15_2580 0.21 +1.1
2,728,726 + HP15_2580 0.21 -0.8
2,728,756 - HP15_2580 0.23 -0.8
2,728,938 + HP15_2580 0.31 -0.5
2,728,966 + HP15_2580 0.33 +0.8

Or see this region's nucleotide sequence