Strain Fitness in Marinobacter adhaerens HP15 around HP15_1912

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1911 and HP15_1912 are separated by 423 nucleotidesHP15_1912 and HP15_1913 are separated by 7 nucleotides HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203 _1911 HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790 _1912 HP15_1913: HP15_1913 - glycosyltransferase, at 2,026,798 to 2,027,919 _1913 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -1 0 1 2at 2024.663 kb on - strand, within HP15_1911at 2024.751 kb on + strand, within HP15_1911at 2024.773 kb on - strand, within HP15_1911at 2024.813 kb on - strand, within HP15_1911at 2025.078 kb on - strandat 2025.098 kb on + strandat 2025.177 kb on - strandat 2025.439 kb on - strandat 2025.522 kb on + strandat 2025.522 kb on + strandat 2025.534 kb on + strandat 2025.544 kb on + strandat 2025.643 kb on - strandat 2025.707 kb on - strandat 2025.783 kb on + strand, within HP15_1912at 2025.791 kb on - strand, within HP15_1912at 2025.813 kb on + strand, within HP15_1912at 2025.927 kb on + strand, within HP15_1912at 2025.946 kb on + strand, within HP15_1912at 2026.018 kb on + strand, within HP15_1912at 2026.036 kb on - strand, within HP15_1912at 2026.052 kb on + strand, within HP15_1912at 2026.060 kb on - strand, within HP15_1912at 2026.278 kb on - strand, within HP15_1912at 2026.488 kb on - strand, within HP15_1912at 2026.682 kb on + strandat 2026.687 kb on + strandat 2026.813 kb on - strandat 2026.826 kb on + strandat 2026.916 kb on - strand, within HP15_1913at 2027.022 kb on - strand, within HP15_1913at 2027.048 kb on + strand, within HP15_1913at 2027.124 kb on - strand, within HP15_1913at 2027.133 kb on - strand, within HP15_1913at 2027.148 kb on + strand, within HP15_1913at 2027.296 kb on - strand, within HP15_1913at 2027.350 kb on + strand, within HP15_1913at 2027.355 kb on + strand, within HP15_1913at 2027.358 kb on - strand, within HP15_1913at 2027.399 kb on - strand, within HP15_1913at 2027.491 kb on + strand, within HP15_1913at 2027.501 kb on - strand, within HP15_1913at 2027.506 kb on - strand, within HP15_1913at 2027.542 kb on - strandat 2027.617 kb on + strand, within HP15_1913at 2027.625 kb on - strand, within HP15_1913at 2027.652 kb on - strand, within HP15_1913at 2027.726 kb on - strand, within HP15_1913

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,024,663 - HP15_1911 0.73 +0.9
2,024,751 + HP15_1911 0.78 +1.3
2,024,773 - HP15_1911 0.79 +0.8
2,024,813 - HP15_1911 0.81 +0.9
2,025,078 - -0.9
2,025,098 + -0.1
2,025,177 - +0.5
2,025,439 - +1.4
2,025,522 + +0.5
2,025,522 + -0.0
2,025,534 + -0.6
2,025,544 + +1.5
2,025,643 - -0.0
2,025,707 - +0.3
2,025,783 + HP15_1912 0.13 +0.9
2,025,791 - HP15_1912 0.14 +0.7
2,025,813 + HP15_1912 0.16 -1.6
2,025,927 + HP15_1912 0.26 -0.4
2,025,946 + HP15_1912 0.27 +1.4
2,026,018 + HP15_1912 0.34 -0.2
2,026,036 - HP15_1912 0.35 +2.4
2,026,052 + HP15_1912 0.37 +0.3
2,026,060 - HP15_1912 0.37 +2.7
2,026,278 - HP15_1912 0.56 -0.2
2,026,488 - HP15_1912 0.74 +1.5
2,026,682 + -0.6
2,026,687 + +1.4
2,026,813 - -0.3
2,026,826 + +1.1
2,026,916 - HP15_1913 0.11 -1.5
2,027,022 - HP15_1913 0.20 +1.0
2,027,048 + HP15_1913 0.22 -0.2
2,027,124 - HP15_1913 0.29 +0.8
2,027,133 - HP15_1913 0.30 -0.5
2,027,148 + HP15_1913 0.31 +0.2
2,027,296 - HP15_1913 0.44 -0.3
2,027,350 + HP15_1913 0.49 +1.0
2,027,355 + HP15_1913 0.50 -0.1
2,027,358 - HP15_1913 0.50 +0.9
2,027,399 - HP15_1913 0.54 +0.6
2,027,491 + HP15_1913 0.62 -0.6
2,027,501 - HP15_1913 0.63 -1.0
2,027,506 - HP15_1913 0.63 +0.8
2,027,542 - +2.1
2,027,617 + HP15_1913 0.73 -0.5
2,027,625 - HP15_1913 0.74 +1.0
2,027,652 - HP15_1913 0.76 +0.0
2,027,726 - HP15_1913 0.83 +0.6

Or see this region's nucleotide sequence