Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1865 and Psest_1866 are separated by 49 nucleotides Psest_1866 and Psest_1867 are separated by 4 nucleotides Psest_1867 and Psest_1868 are separated by 82 nucleotides Psest_1868 and Psest_1869 are separated by 173 nucleotides
Psest_1865: Psest_1865 - Predicted periplasmic protein, at 1,976,150 to 1,976,866
_1865
Psest_1866: Psest_1866 - Uncharacterized protein conserved in bacteria, at 1,976,916 to 1,977,335
_1866
Psest_1867: Psest_1867 - hypothetical protein, at 1,977,340 to 1,977,438
_1867
Psest_1868: Psest_1868 - yecA family protein, at 1,977,521 to 1,978,108
_1868
Psest_1869: Psest_1869 - ATP-dependent DNA helicase RecQ, at 1,978,282 to 1,980,405
_1869
Position (kb)
1977
1978
1979 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1976.544 kb on + strand, within Psest_1865 at 1976.932 kb on - strand at 1976.932 kb on - strand at 1976.932 kb on - strand at 1976.932 kb on - strand at 1976.932 kb on - strand at 1976.932 kb on - strand at 1976.932 kb on - strand at 1976.968 kb on + strand, within Psest_1866 at 1976.968 kb on + strand, within Psest_1866 at 1976.968 kb on + strand, within Psest_1866 at 1976.968 kb on + strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1976.969 kb on - strand, within Psest_1866 at 1977.073 kb on + strand, within Psest_1866 at 1977.073 kb on + strand, within Psest_1866 at 1977.073 kb on + strand, within Psest_1866 at 1977.073 kb on + strand, within Psest_1866 at 1977.073 kb on + strand, within Psest_1866 at 1977.074 kb on - strand, within Psest_1866 at 1977.074 kb on - strand, within Psest_1866 at 1977.096 kb on - strand, within Psest_1866 at 1977.176 kb on + strand, within Psest_1866 at 1977.237 kb on + strand, within Psest_1866 at 1977.237 kb on + strand, within Psest_1866 at 1977.579 kb on + strand at 1977.579 kb on + strand at 1977.580 kb on - strand, within Psest_1868 at 1977.884 kb on + strand, within Psest_1868 at 1977.884 kb on + strand, within Psest_1868 at 1977.885 kb on - strand, within Psest_1868 at 1977.885 kb on - strand, within Psest_1868 at 1977.885 kb on - strand, within Psest_1868 at 1977.933 kb on + strand, within Psest_1868 at 1977.933 kb on + strand, within Psest_1868 at 1977.933 kb on + strand, within Psest_1868 at 1977.933 kb on + strand, within Psest_1868 at 1978.032 kb on + strand, within Psest_1868 at 1978.033 kb on - strand, within Psest_1868 at 1978.033 kb on - strand, within Psest_1868 at 1978.116 kb on + strand at 1978.116 kb on + strand at 1978.183 kb on + strand at 1978.252 kb on + strand at 1978.252 kb on + strand at 1978.252 kb on + strand at 1978.252 kb on + strand at 1978.253 kb on - strand at 1978.253 kb on - strand at 1978.254 kb on + strand at 1978.254 kb on + strand at 1978.254 kb on + strand at 1978.254 kb on + strand at 1978.255 kb on - strand at 1978.255 kb on - strand at 1978.662 kb on - strand, within Psest_1869 at 1978.741 kb on + strand, within Psest_1869 at 1978.742 kb on - strand, within Psest_1869 at 1978.900 kb on + strand, within Psest_1869
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 1,976,544 + Psest_1865 0.55 +0.2 1,976,932 - +0.6 1,976,932 - -1.9 1,976,932 - +0.0 1,976,932 - -0.6 1,976,932 - +0.0 1,976,932 - -0.2 1,976,932 - +0.5 1,976,968 + Psest_1866 0.12 -0.7 1,976,968 + Psest_1866 0.12 -0.2 1,976,968 + Psest_1866 0.12 -0.3 1,976,968 + Psest_1866 0.12 +0.3 1,976,969 - Psest_1866 0.13 +0.1 1,976,969 - Psest_1866 0.13 -0.2 1,976,969 - Psest_1866 0.13 -1.4 1,976,969 - Psest_1866 0.13 +0.1 1,976,969 - Psest_1866 0.13 -1.0 1,976,969 - Psest_1866 0.13 +1.1 1,976,969 - Psest_1866 0.13 -1.5 1,977,073 + Psest_1866 0.37 +0.0 1,977,073 + Psest_1866 0.37 -0.1 1,977,073 + Psest_1866 0.37 -0.6 1,977,073 + Psest_1866 0.37 -0.0 1,977,073 + Psest_1866 0.37 +0.1 1,977,074 - Psest_1866 0.38 +0.1 1,977,074 - Psest_1866 0.38 -0.9 1,977,096 - Psest_1866 0.43 +0.2 1,977,176 + Psest_1866 0.62 -1.5 1,977,237 + Psest_1866 0.76 -1.0 1,977,237 + Psest_1866 0.76 -0.8 1,977,579 + -2.0 1,977,579 + +0.6 1,977,580 - Psest_1868 0.10 -1.5 1,977,884 + Psest_1868 0.62 -0.8 1,977,884 + Psest_1868 0.62 +1.3 1,977,885 - Psest_1868 0.62 +0.3 1,977,885 - Psest_1868 0.62 -1.2 1,977,885 - Psest_1868 0.62 -1.1 1,977,933 + Psest_1868 0.70 -1.2 1,977,933 + Psest_1868 0.70 -1.5 1,977,933 + Psest_1868 0.70 -1.7 1,977,933 + Psest_1868 0.70 -0.4 1,978,032 + Psest_1868 0.87 -0.2 1,978,033 - Psest_1868 0.87 +1.0 1,978,033 - Psest_1868 0.87 -1.0 1,978,116 + -2.9 1,978,116 + +0.3 1,978,183 + +1.0 1,978,252 + +0.4 1,978,252 + -1.9 1,978,252 + -2.2 1,978,252 + -0.9 1,978,253 - -0.2 1,978,253 - +0.4 1,978,254 + -0.2 1,978,254 + +0.4 1,978,254 + +0.3 1,978,254 + +0.5 1,978,255 - +0.3 1,978,255 - +0.1 1,978,662 - Psest_1869 0.18 -0.3 1,978,741 + Psest_1869 0.22 +2.3 1,978,742 - Psest_1869 0.22 -0.5 1,978,900 + Psest_1869 0.29 +0.0
Or see this region's nucleotide sequence