Strain Fitness in Shewanella amazonensis SB2B around Sama_3548

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
4,179,646	+		Sama_3546	0.87	+1.4
4,179,646	+		Sama_3546	0.87	-0.1
4,179,647	-		Sama_3546	0.87	+4.4
4,179,647	-		Sama_3546	0.87	+0.5
4,179,689	+		Sama_3546	0.89	-0.3
4,179,689	+		Sama_3546	0.89	-0.1
4,179,690	-		Sama_3546	0.89	+2.8
4,179,701	+		Sama_3546	0.90	-0.3
4,179,702	-		Sama_3546	0.90	+0.9
4,179,702	-		Sama_3546	0.90	+0.3
4,179,704	+		Sama_3546	0.90	+2.1
4,179,704	+		Sama_3546	0.90	-0.3
4,179,704	+		Sama_3546	0.90	+0.9
4,179,704	+		Sama_3546	0.90	+0.3
4,179,704	+		Sama_3546	0.90	+1.2
4,179,704	+		Sama_3546	0.90	+1.6
4,179,704	+		Sama_3546	0.90	+1.6
4,179,704	+		Sama_3546	0.90	+0.5
4,179,705	-		Sama_3546	0.90	+1.4
4,179,705	-		Sama_3546	0.90	+1.3
4,179,705	-		Sama_3546	0.90	+1.6
4,179,705	-		Sama_3546	0.90	+1.3
4,179,705	-		Sama_3546	0.90	-0.7
4,179,710	+				-2.1
4,179,710	+				+0.7
4,179,710	+				-2.2
4,179,710	+				-0.1
4,179,711	-				-0.1
4,179,711	-				+0.1
4,179,711	-				-0.2
4,179,726	+				-0.0
4,179,726	+				-0.2
4,179,726	+				-1.3
4,179,727	-				+0.7
4,179,766	+				-1.5
4,179,766	+				+3.2
4,179,766	+				+1.0
4,179,766	+				-1.6
4,179,766	+				+1.6
4,179,767	-				+0.8
4,179,767	-				+0.7
4,179,773	-				-0.9
4,179,781	+				-0.9
4,179,799	+				+1.0
4,179,805	+				-1.1
4,179,806	-				-0.0
4,179,806	-				+0.7
4,179,874	+				-0.3
4,179,886	-				+0.2
4,179,929	-				-0.9
4,179,929	-				+0.3
4,179,929	-				-0.5
4,179,951	+				-1.1
4,179,954	+				+0.3
4,179,979	+				-0.5
4,179,980	-				-1.4
4,180,001	+				-2.0
4,180,013	+				+0.5
4,180,014	-				-1.2
4,180,014	-				-0.0
4,180,039	+				-0.7
4,180,039	+				+0.9
4,180,044	+				+0.9
4,180,063	-		Sama_3547	0.12	+1.0
4,180,073	+		Sama_3547	0.14	+0.4
4,180,073	+		Sama_3547	0.14	+0.2
4,180,073	+		Sama_3547	0.14	-0.1
4,180,074	-		Sama_3547	0.14	-0.1
4,180,074	-		Sama_3547	0.14	+0.3
4,180,153	+		Sama_3547	0.27	+0.6
4,180,153	+		Sama_3547	0.27	-1.4
4,180,153	+		Sama_3547	0.27	-0.1
4,180,154	-		Sama_3547	0.28	-0.8
4,180,175	+		Sama_3547	0.31	+1.0
4,180,175	+		Sama_3547	0.31	-0.1
4,180,175	+		Sama_3547	0.31	-1.9
4,180,175	+		Sama_3547	0.31	-2.1
4,180,176	-		Sama_3547	0.31	+0.0
4,180,176	-		Sama_3547	0.31	+1.3
4,180,176	-		Sama_3547	0.31	+0.0
4,180,176	-		Sama_3547	0.31	+0.3
4,180,176	-		Sama_3547	0.31	-1.5
4,180,208	+		Sama_3547	0.37	-1.1
4,180,209	-		Sama_3547	0.37	-0.1
4,180,223	+		Sama_3547	0.39	-0.7
4,180,227	+		Sama_3547	0.40	-0.1
4,180,227	+		Sama_3547	0.40	-0.1
4,180,227	+		Sama_3547	0.40	+0.2
4,180,227	+		Sama_3547	0.40	-1.6
4,180,227	+		Sama_3547	0.40	-0.1
4,180,227	+		Sama_3547	0.40	+0.6
4,180,228	-		Sama_3547	0.40	-1.5
4,180,228	-		Sama_3547	0.40	-0.5
4,180,228	-		Sama_3547	0.40	+1.2
4,180,228	-		Sama_3547	0.40	-0.6
4,180,228	-		Sama_3547	0.40	-1.1
4,180,228	-		Sama_3547	0.40	+0.5
4,180,228	-		Sama_3547	0.40	-1.9
4,180,228	-		Sama_3547	0.40	-0.3
4,180,228	-		Sama_3547	0.40	-0.2
4,180,228	-		Sama_3547	0.40	-2.0
4,180,228	-		Sama_3547	0.40	+1.5
4,180,228	-		Sama_3547	0.40	-1.8
4,180,252	+		Sama_3547	0.44	-0.9
4,180,252	+		Sama_3547	0.44	-0.3
4,180,253	-		Sama_3547	0.44	+0.8
4,180,286	-		Sama_3547	0.50	+2.3
4,180,286	-		Sama_3547	0.50	-0.1
4,180,308	+		Sama_3547	0.54	+0.1
4,180,308	+		Sama_3547	0.54	-1.5
4,180,308	+		Sama_3547	0.54	-0.7
4,180,308	+		Sama_3547	0.54	+0.8
4,180,309	-		Sama_3547	0.54	+0.7
4,180,309	-		Sama_3547	0.54	-1.5
4,180,309	-		Sama_3547	0.54	-0.5
4,180,309	-		Sama_3547	0.54	-0.3
4,180,309	-		Sama_3547	0.54	+0.8
4,180,383	+		Sama_3547	0.66	-0.1
4,180,385	+		Sama_3547	0.66	+0.1
4,180,426	+		Sama_3547	0.73	+0.4
4,180,426	+		Sama_3547	0.73	-3.2
4,180,426	+		Sama_3547	0.73	-2.7
4,180,426	+		Sama_3547	0.73	-1.1
4,180,427	-		Sama_3547	0.74	-2.5
4,180,427	-		Sama_3547	0.74	-1.3
4,180,427	-		Sama_3547	0.74	+1.8
4,180,427	-		Sama_3547	0.74	+2.9
4,180,500	+		Sama_3547	0.86	-0.6
4,180,574	+				+0.3
4,180,575	-				+0.3
4,180,575	-				-1.1
4,180,575	-				-0.7
4,180,575	-				-0.4
4,180,581	+				+1.9
4,180,581	+				-2.5
4,180,582	-				-0.5
4,180,582	-				+1.0
4,180,582	-				-2.0
4,180,582	-				+1.7
4,180,766	-		Sama_3548	0.28	+0.7
4,180,766	-		Sama_3548	0.28	+0.0
4,180,823	+		Sama_3548	0.37	-2.1
4,180,824	-		Sama_3548	0.37	-0.8
4,180,824	-		Sama_3548	0.37	-0.7
4,180,936	+		Sama_3548	0.54	-0.0
4,181,006	+		Sama_3548	0.65	+0.8
4,181,006	+		Sama_3548	0.65	+0.4
4,181,007	-		Sama_3548	0.65	-1.3
4,181,007	-		Sama_3548	0.65	-0.6
4,181,007	-		Sama_3548	0.65	-2.2
4,181,008	+		Sama_3548	0.65	+0.1
4,181,008	+		Sama_3548	0.65	+1.6
4,181,008	+		Sama_3548	0.65	+0.0
4,181,008	+		Sama_3548	0.65	-0.7
4,181,008	+		Sama_3548	0.65	+1.2
4,181,008	+		Sama_3548	0.65	+1.4
4,181,008	+		Sama_3548	0.65	-1.5
4,181,008	+		Sama_3548	0.65	-1.5
4,181,008	+		Sama_3548	0.65	-1.2
4,181,008	+		Sama_3548	0.65	-1.3
4,181,008	+		Sama_3548	0.65	-2.2
4,181,008	+		Sama_3548	0.65	-1.0
4,181,008	+		Sama_3548	0.65	+0.5
4,181,008	+		Sama_3548	0.65	-1.0
4,181,008	+		Sama_3548	0.65	-0.9
4,181,008	+		Sama_3548	0.65	-2.0
4,181,008	+		Sama_3548	0.65	-0.9
4,181,008	+		Sama_3548	0.65	-0.3
4,181,008	+		Sama_3548	0.65	-0.3
4,181,008	+		Sama_3548	0.65	-0.6
4,181,008	+		Sama_3548	0.65	-0.0
4,181,009	-		Sama_3548	0.66	+0.8
4,181,009	-		Sama_3548	0.66	-1.1
4,181,009	-		Sama_3548	0.66	+1.1
4,181,009	-		Sama_3548	0.66	-0.5
4,181,009	-		Sama_3548	0.66	+1.0
4,181,009	-		Sama_3548	0.66	+1.9
4,181,009	-		Sama_3548	0.66	+3.6
4,181,009	-		Sama_3548	0.66	-0.4
4,181,009	-		Sama_3548	0.66	-1.0
4,181,009	-		Sama_3548	0.66	-0.1
4,181,022	+		Sama_3548	0.68	-1.0
4,181,022	+		Sama_3548	0.68	+0.9
4,181,023	-		Sama_3548	0.68	-1.5
4,181,023	-		Sama_3548	0.68	-1.7
4,181,023	-		Sama_3548	0.68	-0.5
4,181,071	+		Sama_3548	0.75	-0.1
4,181,072	-		Sama_3548	0.75	-1.5
4,181,072	-		Sama_3548	0.75	-0.3
4,181,072	-		Sama_3548	0.75	-2.9
4,181,097	+		Sama_3548	0.79	-2.6
4,181,097	+		Sama_3548	0.79	+0.9
4,181,097	+		Sama_3548	0.79	+0.2
4,181,098	-		Sama_3548	0.79	-1.0
4,181,098	-		Sama_3548	0.79	-0.5
4,181,098	-		Sama_3548	0.79	+0.3
4,181,123	+		Sama_3548	0.83	-1.1
4,181,123	+		Sama_3548	0.83	-1.7
4,181,123	+		Sama_3548	0.83	+0.3
4,181,123	+		Sama_3548	0.83	-0.3
4,181,123	+		Sama_3548	0.83	-0.8
4,181,123	+		Sama_3548	0.83	-1.9
4,181,123	+		Sama_3548	0.83	-0.6
4,181,123	+		Sama_3548	0.83	+0.2
4,181,124	-		Sama_3548	0.83	+1.2
4,181,124	-		Sama_3548	0.83	-0.0
4,181,124	-		Sama_3548	0.83	-1.7
4,181,175	+				-0.6
4,181,176	-				-1.2
4,181,176	-				+1.0
4,181,176	-				-0.5
4,181,176	-				+0.9
4,181,203	-				-1.3
4,181,220	+				+1.3
4,181,220	+				+2.1
4,181,221	-				+0.5
4,181,221	-				+0.5
4,181,266	+				+3.6
4,181,266	+				-0.3
4,181,267	-				+1.6
4,181,271	+				+0.1
4,181,271	+				+1.9
4,181,271	+				-0.7
4,181,272	-				-2.6
4,181,272	-				-2.3
4,181,342	+				-0.3
4,181,342	+				-1.1
4,181,342	+				+0.0
4,181,342	+				+1.3
4,181,342	+				+0.4
4,181,343	-				-1.0
4,181,343	-				+0.4
4,181,351	+				-1.2
4,181,352	-				-1.2
4,181,352	-				-3.1
4,181,353	+				-0.3
4,181,353	+				+0.2
4,181,353	+				-0.0
4,181,353	+				+0.5
4,181,353	+				+0.1
4,181,354	-				-0.4
4,181,354	-				+0.6
4,181,354	-				-0.4
4,181,368	+				-0.0
4,181,368	+				+0.3
4,181,368	+				+2.6
4,181,368	+				-1.2
4,181,369	-				-1.2
4,181,369	-				-1.3
4,181,369	-				+2.0
4,181,369	-				+1.0
4,181,385	+		Sama_3549	0.12	-0.2
4,181,386	-		Sama_3549	0.12	-1.2
4,181,392	+		Sama_3549	0.12	+1.2
4,181,392	+		Sama_3549	0.12	-0.7
4,181,393	-		Sama_3549	0.13	-0.3
4,181,457	+		Sama_3549	0.20	-0.5
4,181,458	-		Sama_3549	0.20	+1.7
4,181,458	-		Sama_3549	0.20	-1.7
4,181,504	+		Sama_3549	0.25	-2.2
4,181,504	+		Sama_3549	0.25	+0.4
4,181,505	-		Sama_3549	0.25	-1.7
4,181,505	-		Sama_3549	0.25	-1.3
4,181,505	-		Sama_3549	0.25	-1.1
4,181,519	+		Sama_3549	0.27	+1.1
4,181,520	-		Sama_3549	0.27	-0.7
4,181,622	+		Sama_3549	0.38	-0.2
4,181,622	+		Sama_3549	0.38	+1.4
4,181,622	+		Sama_3549	0.38	-0.7
4,181,622	+		Sama_3549	0.38	+0.7
4,181,622	+		Sama_3549	0.38	+0.0
4,181,622	+		Sama_3549	0.38	+1.9
4,181,623	-		Sama_3549	0.38	-1.7
4,181,623	-		Sama_3549	0.38	-0.1
4,181,623	-		Sama_3549	0.38	-0.5
4,181,623	-		Sama_3549	0.38	+0.4
4,181,623	-		Sama_3549	0.38	+1.4
4,181,623	-		Sama_3549	0.38	-1.0
4,181,662	+		Sama_3549	0.42	+1.5
4,181,662	+		Sama_3549	0.42	+2.4
4,181,662	+		Sama_3549	0.42	-0.9
4,181,662	+		Sama_3549	0.42	-0.3
4,181,662	+		Sama_3549	0.42	+0.5
4,181,662	+		Sama_3549	0.42	-0.9
4,181,663	-		Sama_3549	0.43	+0.8
4,181,663	-		Sama_3549	0.43	+0.5
4,181,663	-		Sama_3549	0.43	+0.2
4,181,663	-		Sama_3549	0.43	-1.8
4,181,705	+		Sama_3549	0.47	-2.8
4,181,706	-		Sama_3549	0.47	-2.1
4,181,706	-		Sama_3549	0.47	+1.7
4,181,745	+		Sama_3549	0.52	+0.9
4,181,745	+		Sama_3549	0.52	+0.3
4,181,745	+		Sama_3549	0.52	-2.0
4,181,745	+		Sama_3549	0.52	+0.2
4,181,746	-		Sama_3549	0.52	-1.6
4,181,746	-		Sama_3549	0.52	-1.5
4,181,746	-		Sama_3549	0.52	+0.9
4,181,858	+		Sama_3549	0.64	+0.9
4,181,858	+		Sama_3549	0.64	-1.6
4,181,858	+		Sama_3549	0.64	-3.3
4,181,858	+		Sama_3549	0.64	+1.3
4,181,859	-		Sama_3549	0.64	+1.0
4,181,859	-		Sama_3549	0.64	+0.6
4,181,859	-		Sama_3549	0.64	-0.1
4,181,859	-		Sama_3549	0.64	+0.6
4,181,859	-		Sama_3549	0.64	+1.8
4,181,859	-		Sama_3549	0.64	-1.5
4,181,859	-		Sama_3549	0.64	+1.1
4,181,859	-		Sama_3549	0.64	-1.6
4,181,859	-		Sama_3549	0.64	-0.0
4,181,958	+		Sama_3549	0.75	+1.4
4,181,958	+		Sama_3549	0.75	-1.6
4,181,958	+		Sama_3549	0.75	+3.4
4,181,958	+		Sama_3549	0.75	+0.7
4,181,958	+		Sama_3549	0.75	-0.9
4,181,958	+		Sama_3549	0.75	+0.5
4,181,959	-		Sama_3549	0.75	-0.4
4,181,959	-		Sama_3549	0.75	+0.4
4,181,971	+		Sama_3549	0.77	+0.6
4,182,008	+		Sama_3549	0.81	+0.0
4,182,132	+				-2.4
4,182,132	+				+0.2
4,182,133	-				-0.6
4,182,133	-				+0.2
4,182,160	+				-2.1
4,182,160	+				-0.3
4,182,195	-				-0.9
4,182,195	-				-1.3
4,182,205	+				-1.5
4,182,206	-				+0.2
4,182,214	+				-1.0
4,182,214	+				+0.1
4,182,214	+				+1.2
4,182,215	-				+0.3
4,182,215	-				-0.9
4,182,216	+				-0.1
4,182,216	+				+1.6
4,182,216	+				+0.3
4,182,216	+				-0.2
4,182,216	+				-0.5
4,182,216	+				-1.2
4,182,216	+				-0.3
4,182,216	+				-2.9
4,182,216	+				+0.9
4,182,216	+				-0.7
4,182,217	-				-0.0
4,182,217	-				-0.1
4,182,217	-				+0.0
4,182,217	-				-0.5
4,182,217	-				-0.9
4,182,220	+				+2.3
4,182,220	+				+0.7
4,182,220	+				-0.5
4,182,220	+				-0.9
4,182,220	+				-1.8
4,182,221	-				-1.9
4,182,221	-				+0.2
4,182,221	-				-1.4
4,182,221	-				+0.4
4,182,221	-				-1.5