Strain Fitness in Shewanella amazonensis SB2B around Sama_3350

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
3,976,232	+		Sama_3349	0.67	-0.7
3,976,232	+		Sama_3349	0.67	-1.2
3,976,292	-		Sama_3349	0.69	-0.9
3,976,292	-		Sama_3349	0.69	-0.4
3,976,302	+		Sama_3349	0.70	+2.5
3,976,317	-		Sama_3349	0.70	-0.2
3,976,329	+		Sama_3349	0.71	-3.3
3,976,329	+		Sama_3349	0.71	+0.4
3,976,379	+		Sama_3349	0.73	+0.8
3,976,379	+		Sama_3349	0.73	-0.0
3,976,474	+		Sama_3349	0.77	+0.9
3,976,475	-		Sama_3349	0.77	+0.0
3,976,475	-		Sama_3349	0.77	-0.6
3,976,475	-		Sama_3349	0.77	+2.7
3,976,523	+		Sama_3349	0.79	-0.4
3,976,524	-		Sama_3349	0.79	+0.2
3,976,524	-		Sama_3349	0.79	-0.3
3,976,534	+		Sama_3349	0.79	+1.4
3,976,534	+		Sama_3349	0.79	+1.4
3,976,534	+		Sama_3349	0.79	+0.6
3,976,535	-		Sama_3349	0.79	-0.0
3,976,540	+		Sama_3349	0.79	-0.7
3,976,540	+		Sama_3349	0.79	+0.8
3,976,540	+		Sama_3349	0.79	+1.4
3,976,540	+		Sama_3349	0.79	-0.5
3,976,540	+		Sama_3349	0.79	+0.9
3,976,540	+		Sama_3349	0.79	+1.5
3,976,541	-		Sama_3349	0.80	+0.3
3,976,541	-		Sama_3349	0.80	-0.3
3,976,571	+		Sama_3349	0.81	-0.6
3,976,572	-		Sama_3349	0.81	+0.4
3,976,598	+		Sama_3349	0.82	+2.5
3,976,598	+		Sama_3349	0.82	+1.9
3,976,599	-		Sama_3349	0.82	-2.3
3,976,599	-		Sama_3349	0.82	+3.2
3,976,599	-		Sama_3349	0.82	+2.1
3,976,599	-		Sama_3349	0.82	+1.0
3,976,624	+		Sama_3349	0.83	+0.1
3,976,624	+		Sama_3349	0.83	+2.2
3,976,624	+		Sama_3349	0.83	-0.5
3,976,624	+		Sama_3349	0.83	+1.5
3,976,624	+		Sama_3349	0.83	+1.3
3,976,624	+		Sama_3349	0.83	-0.5
3,976,624	+		Sama_3349	0.83	-0.1
3,976,625	-		Sama_3349	0.83	-2.2
3,976,626	+		Sama_3349	0.83	-1.3
3,976,627	-		Sama_3349	0.83	-0.1
3,976,627	-		Sama_3349	0.83	+1.3
3,976,627	-		Sama_3349	0.83	+1.6
3,976,627	-		Sama_3349	0.83	-1.3
3,976,674	-		Sama_3349	0.85	+1.4
3,976,675	+		Sama_3349	0.85	+2.7
3,976,675	+		Sama_3349	0.85	+0.1
3,976,675	+		Sama_3349	0.85	-0.4
3,976,675	+		Sama_3349	0.85	+1.6
3,976,675	+		Sama_3349	0.85	+0.8
3,976,675	+		Sama_3349	0.85	+0.5
3,976,675	+		Sama_3349	0.85	-1.0
3,976,675	+		Sama_3349	0.85	+0.7
3,976,675	+		Sama_3349	0.85	-0.0
3,976,675	+		Sama_3349	0.85	+0.3
3,976,675	+		Sama_3349	0.85	+5.1
3,976,676	-		Sama_3349	0.85	+0.4
3,976,676	-		Sama_3349	0.85	+0.1
3,976,676	-		Sama_3349	0.85	+1.9
3,976,676	-		Sama_3349	0.85	+0.7
3,976,676	-		Sama_3349	0.85	+1.0
3,976,676	-		Sama_3349	0.85	+1.3
3,976,676	-		Sama_3349	0.85	+0.4
3,976,676	-		Sama_3349	0.85	-1.3
3,976,676	-		Sama_3349	0.85	+1.1
3,976,676	-		Sama_3349	0.85	+0.7
3,976,676	-		Sama_3349	0.85	+4.1
3,976,676	-		Sama_3349	0.85	-0.0
3,976,676	-		Sama_3349	0.85	-1.0
3,976,676	-		Sama_3349	0.85	-0.5
3,976,676	-		Sama_3349	0.85	+2.0
3,976,709	+		Sama_3349	0.86	-1.6
3,976,710	-		Sama_3349	0.86	-0.5
3,976,710	-		Sama_3349	0.86	-1.9
3,976,710	-		Sama_3349	0.86	-0.7
3,976,710	-		Sama_3349	0.86	-0.8
3,976,711	+		Sama_3349	0.87	-1.6
3,976,711	+		Sama_3349	0.87	+0.5
3,976,712	-		Sama_3349	0.87	-1.1
3,976,712	-		Sama_3349	0.87	+0.7
3,976,712	-		Sama_3349	0.87	+0.7
3,976,753	+		Sama_3349	0.88	+0.8
3,976,753	+		Sama_3349	0.88	+0.2
3,976,753	+		Sama_3349	0.88	-2.5
3,976,754	-		Sama_3349	0.88	-0.6
3,976,781	+		Sama_3349	0.89	-0.1
3,976,782	-		Sama_3349	0.89	+1.1
3,976,797	-				-1.3
3,976,818	-				-1.0
3,976,818	-				-0.3
3,976,818	-				-0.1
3,976,891	+				+1.5
3,976,891	+				-1.6
3,976,891	+				+0.4
3,976,891	+				+1.1
3,976,891	+				-0.8
3,976,891	+				-0.1
3,976,891	+				+2.8
3,976,891	+				+0.9
3,976,892	-				+0.3
3,976,892	-				+0.0
3,976,892	-				+1.7
3,976,892	-				+4.0
3,976,892	-				-0.6
3,976,892	-				+1.6
3,976,892	-				-0.1
3,976,892	-				+1.1
3,976,892	-				-2.7
3,976,892	-				+0.5
3,976,908	+				+0.6
3,976,908	+				+1.3
3,976,908	+				+1.5
3,976,908	+				-0.2
3,976,908	+				-0.5
3,976,908	+				+4.7
3,976,909	-				+0.5
3,976,909	-				-1.6
3,976,909	-				-0.3
3,976,909	-				+1.8
3,976,909	-				-0.9
3,976,909	-				+1.6
3,976,909	-				+0.1
3,976,909	-				-2.1
3,976,984	+				-0.1
3,977,104	+				+0.0
3,977,104	+				-1.3
3,977,104	+				+1.5
3,977,104	+				+0.1
3,977,104	+				-0.4
3,977,105	-				-1.4
3,977,105	-				+0.2
3,977,105	-				-0.4
3,977,105	-				-0.3
3,977,105	-				-0.7
3,977,105	-				+2.3
3,977,106	+				+3.6
3,977,106	+				+0.1
3,977,107	-				-1.5
3,977,107	-				+0.9
3,977,107	-				+1.5
3,977,107	-				+0.7
3,977,124	-				+1.4
3,977,124	-				-0.8
3,977,171	+				+5.1
3,977,182	+				+1.7
3,977,183	-				+1.0
3,977,183	-				-1.0
3,977,217	+				+0.7
3,977,218	-				-2.6
3,977,235	+		Sama_3350	0.13	-0.3
3,977,236	-		Sama_3350	0.14	+0.5
3,977,242	-		Sama_3350	0.15	-0.6
3,977,249	+		Sama_3350	0.17	+4.1
3,977,250	-		Sama_3350	0.17	+0.4
3,977,282	-		Sama_3350	0.25	-0.4
3,977,328	+		Sama_3350	0.36	+2.1
3,977,349	+		Sama_3350	0.41	+0.7
3,977,350	-		Sama_3350	0.42	-0.4
3,977,350	-		Sama_3350	0.42	+0.4
3,977,350	-		Sama_3350	0.42	+1.8
3,977,350	-		Sama_3350	0.42	+0.2
3,977,359	+		Sama_3350	0.44	+3.0
3,977,359	+		Sama_3350	0.44	+3.3
3,977,359	+		Sama_3350	0.44	+4.0
3,977,359	+		Sama_3350	0.44	+1.3
3,977,359	+		Sama_3350	0.44	+2.0
3,977,359	+		Sama_3350	0.44	+2.3
3,977,359	+		Sama_3350	0.44	+2.4
3,977,360	-		Sama_3350	0.44	-0.4
3,977,360	-		Sama_3350	0.44	+2.1
3,977,360	-		Sama_3350	0.44	+0.5
3,977,360	-		Sama_3350	0.44	+1.1
3,977,370	+		Sama_3350	0.47	+1.6
3,977,399	+		Sama_3350	0.54	+0.9
3,977,399	+		Sama_3350	0.54	+1.1
3,977,400	-		Sama_3350	0.54	+1.0
3,977,400	-		Sama_3350	0.54	+1.8
3,977,419	+		Sama_3350	0.59	+0.9
3,977,419	+		Sama_3350	0.59	+0.6
3,977,419	+		Sama_3350	0.59	+2.1
3,977,419	+		Sama_3350	0.59	+2.0
3,977,419	+		Sama_3350	0.59	+4.3
3,977,419	+		Sama_3350	0.59	+2.2
3,977,419	+		Sama_3350	0.59	-1.0
3,977,420	-		Sama_3350	0.59	-0.2
3,977,420	-		Sama_3350	0.59	-1.2
3,977,420	-		Sama_3350	0.59	+0.8
3,977,420	-		Sama_3350	0.59	-0.6
3,977,420	-		Sama_3350	0.59	-1.0
3,977,420	-		Sama_3350	0.59	-2.0
3,977,427	-		Sama_3350	0.61	+1.0
3,977,538	+		Sama_3350	0.88	+1.7
3,977,538	+		Sama_3350	0.88	+2.7
3,977,539	-		Sama_3350	0.88	-1.1
3,977,556	+				+3.0
3,977,556	+				+3.0
3,977,556	+				+2.0
3,977,556	+				+3.3
3,977,556	+				+3.2
3,977,557	-				-1.1
3,977,557	-				+1.7
3,977,557	-				-2.7
3,977,557	-				-1.2
3,977,557	-				-1.5
3,977,557	-				+0.8
3,977,557	-				-1.1
3,977,557	-				-2.3
3,977,560	+				+4.0
3,977,560	+				+5.0
3,977,560	+				+1.0
3,977,560	+				+2.3
3,977,560	+				-0.5
3,977,560	+				+4.7
3,977,560	+				+3.0
3,977,561	-				+2.0
3,977,561	-				-1.9
3,977,561	-				+1.6
3,977,561	-				+1.3
3,977,561	-				-2.9
3,977,561	-				-1.1
3,977,561	-				+0.2
3,977,561	-				-2.0
3,977,562	+				+0.1
3,977,562	+				+2.3
3,977,562	+				+3.3
3,977,562	+				+4.6
3,977,562	+				+4.3
3,977,562	+				-1.6
3,977,562	+				-1.3
3,977,562	+				+1.7
3,977,562	+				-0.6
3,977,562	+				+2.4
3,977,563	-				-0.4
3,977,563	-				-1.2
3,977,563	-				+1.9
3,977,563	-				-1.5
3,977,563	-				-0.8
3,977,563	-				+0.1
3,977,585	+				+0.5
3,977,585	+				+2.8
3,977,585	+				+2.5
3,977,585	+				-1.0
3,977,585	+				+3.4
3,977,585	+				+1.1
3,977,585	+				+5.5
3,977,585	+				+2.1
3,977,585	+				+2.3
3,977,585	+				+4.6
3,977,586	-				+1.0
3,977,586	-				+0.5
3,977,586	-				+0.4
3,977,586	-				-1.0
3,977,586	-				+3.3
3,977,586	-				-0.0
3,977,586	-				+1.2
3,977,586	-				-0.5
3,977,586	-				+0.2
3,977,586	-				-1.3
3,977,586	-				+1.4
3,977,586	-				+1.0
3,977,586	-				-1.6
3,977,617	+				+3.8
3,977,618	-				-0.0
3,977,618	-				+0.2
3,977,618	-				-2.0
3,977,636	-				+0.4
3,977,669	+				-0.5
3,977,707	+				-1.3
3,977,712	+				+0.5
3,977,712	+				-1.9
3,977,712	+				+1.4
3,977,713	-				+2.0
3,977,713	-				-1.3
3,977,713	-				+2.1
3,977,713	-				-0.7
3,977,713	-				-2.3
3,977,768	+				-0.3
3,977,843	-		Sama_3351	0.10	-1.2
3,977,868	+		Sama_3351	0.12	-0.6
3,977,868	+		Sama_3351	0.12	-3.1
3,977,868	+		Sama_3351	0.12	-2.1
3,977,869	-		Sama_3351	0.12	-1.6
3,977,869	-		Sama_3351	0.12	-2.5
3,977,928	+		Sama_3351	0.17	+0.6
3,977,928	+		Sama_3351	0.17	-0.5
3,977,928	+		Sama_3351	0.17	-0.3
3,977,928	+		Sama_3351	0.17	+1.3
3,977,928	+		Sama_3351	0.17	-1.1
3,977,928	+		Sama_3351	0.17	-1.3
3,977,928	+		Sama_3351	0.17	+0.2
3,977,929	-		Sama_3351	0.17	-1.2
3,977,929	-		Sama_3351	0.17	-1.3
3,977,929	-		Sama_3351	0.17	-1.3
3,977,929	-		Sama_3351	0.17	+0.5
3,977,930	+		Sama_3351	0.17	+0.5
3,977,930	+		Sama_3351	0.17	-1.9
3,977,930	+		Sama_3351	0.17	-0.8
3,977,930	+		Sama_3351	0.17	-1.0
3,977,930	+		Sama_3351	0.17	+0.5
3,977,930	+		Sama_3351	0.17	-0.2
3,977,930	+		Sama_3351	0.17	-0.5
3,977,930	+		Sama_3351	0.17	-0.9
3,977,931	-		Sama_3351	0.17	-0.5
3,977,931	-		Sama_3351	0.17	-0.2
3,977,931	-		Sama_3351	0.17	+0.5
3,977,931	-		Sama_3351	0.17	-0.1
3,977,931	-		Sama_3351	0.17	+0.0
3,977,931	-		Sama_3351	0.17	-0.3
3,978,065	+		Sama_3351	0.28	-0.0
3,978,065	+		Sama_3351	0.28	-0.3
3,978,066	-		Sama_3351	0.28	-0.4
3,978,160	+		Sama_3351	0.36	-0.5
3,978,160	+		Sama_3351	0.36	-1.4
3,978,160	+		Sama_3351	0.36	+0.1
3,978,160	+		Sama_3351	0.36	+0.2
3,978,160	+		Sama_3351	0.36	-1.0
3,978,160	+		Sama_3351	0.36	-2.2
3,978,160	+		Sama_3351	0.36	-2.5
3,978,161	-		Sama_3351	0.36	-1.2
3,978,161	-		Sama_3351	0.36	-2.8
3,978,187	+		Sama_3351	0.38	-1.0
3,978,188	-		Sama_3351	0.38	-2.4
3,978,188	-		Sama_3351	0.38	-0.6
3,978,188	-		Sama_3351	0.38	-2.9
3,978,188	-		Sama_3351	0.38	-1.6
3,978,192	+		Sama_3351	0.38	-0.1
3,978,192	+		Sama_3351	0.38	-0.4
3,978,227	+		Sama_3351	0.41	-0.1
3,978,295	-		Sama_3351	0.47	-1.3
3,978,311	+		Sama_3351	0.48	-1.1
3,978,341	+		Sama_3351	0.50	-0.2
3,978,341	+		Sama_3351	0.50	-1.6
3,978,341	+		Sama_3351	0.50	-0.2
3,978,341	+		Sama_3351	0.50	-0.5
3,978,341	+		Sama_3351	0.50	-0.9
3,978,341	+		Sama_3351	0.50	+0.2
3,978,342	-		Sama_3351	0.50	-0.5
3,978,342	-		Sama_3351	0.50	-1.5
3,978,342	-		Sama_3351	0.50	-2.2
3,978,342	-		Sama_3351	0.50	+0.3
3,978,376	+		Sama_3351	0.53	-0.6
3,978,377	-		Sama_3351	0.53	+0.1
3,978,419	+		Sama_3351	0.57	-0.3
3,978,419	+		Sama_3351	0.57	+0.7
3,978,419	+		Sama_3351	0.57	-0.1
3,978,420	-		Sama_3351	0.57	+0.3
3,978,446	+		Sama_3351	0.59	+0.7
3,978,447	-		Sama_3351	0.59	-0.3
3,978,447	-		Sama_3351	0.59	-2.2
3,978,453	+		Sama_3351	0.59	-0.6
3,978,453	+		Sama_3351	0.59	-1.7
3,978,453	+		Sama_3351	0.59	-2.1
3,978,454	-		Sama_3351	0.60	-0.5
3,978,454	-		Sama_3351	0.60	-0.2
3,978,454	-		Sama_3351	0.60	-0.3
3,978,454	-		Sama_3351	0.60	+1.3
3,978,510	+		Sama_3351	0.64	-0.8
3,978,510	+		Sama_3351	0.64	-2.3
3,978,510	+		Sama_3351	0.64	-1.0
3,978,510	+		Sama_3351	0.64	-1.6
3,978,510	+		Sama_3351	0.64	+0.4
3,978,510	+		Sama_3351	0.64	-0.2
3,978,510	+		Sama_3351	0.64	+0.2
3,978,510	+		Sama_3351	0.64	+1.1
3,978,510	+		Sama_3351	0.64	-2.1
3,978,511	-		Sama_3351	0.64	+0.7
3,978,511	-		Sama_3351	0.64	-0.4
3,978,511	-		Sama_3351	0.64	-0.1
3,978,511	-		Sama_3351	0.64	-2.8
3,978,511	-		Sama_3351	0.64	-1.2
3,978,511	-		Sama_3351	0.64	+0.8
3,978,511	-		Sama_3351	0.64	-1.2
3,978,511	-		Sama_3351	0.64	+0.0
3,978,511	-		Sama_3351	0.64	+2.8
3,978,511	-		Sama_3351	0.64	-1.0
3,978,512	+		Sama_3351	0.64	-1.3
3,978,512	+		Sama_3351	0.64	+1.3
3,978,513	-		Sama_3351	0.64	-0.3
3,978,584	+		Sama_3351	0.70	+2.1
3,978,585	-		Sama_3351	0.70	+0.2