Strain Fitness in Shewanella amazonensis SB2B around Sama_3201

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
3,790,935	+				-0.4
3,790,949	+				-1.2
3,790,949	+				+1.2
3,790,950	-				+0.3
3,790,950	-				-1.7
3,790,951	+				+2.2
3,790,951	+				-0.1
3,790,951	+				-0.9
3,790,951	+				-1.1
3,790,952	-				+0.7
3,790,952	-				-0.1
3,790,952	-				+0.1
3,790,952	-				-1.4
3,790,952	-				-0.0
3,790,952	-				+1.0
3,790,952	-				-1.4
3,790,997	-				+0.1
3,791,009	+				+4.3
3,791,010	-				-1.0
3,791,010	-				-1.1
3,791,037	+				+0.0
3,791,038	-				+0.3
3,791,038	-				+1.4
3,791,038	-				-2.0
3,791,039	+				-1.6
3,791,039	+				+0.4
3,791,039	+				+1.8
3,791,039	+				-0.5
3,791,039	+				+0.3
3,791,039	+				+0.3
3,791,039	+				-0.3
3,791,039	+				-1.1
3,791,040	-				-1.5
3,791,040	-				+0.9
3,791,040	-				-1.5
3,791,040	-				-1.0
3,791,040	-				-1.8
3,791,040	-				-0.2
3,791,040	-				+0.6
3,791,040	-				+1.5
3,791,043	-				+1.1
3,791,043	-				-1.0
3,791,066	-				-0.7
3,791,066	-				-0.0
3,791,066	-				+0.1
3,791,068	+				+1.1
3,791,069	-				+0.2
3,791,069	-				-1.2
3,791,080	-				+1.3
3,791,081	+				-0.5
3,791,081	+				+0.6
3,791,081	+				-2.0
3,791,081	+				-2.1
3,791,081	+				-0.7
3,791,082	-				-2.5
3,791,082	-				+0.9
3,791,082	-				+0.3
3,791,082	-				-2.1
3,791,082	-				-0.4
3,791,082	-				-0.9
3,791,109	+				-0.2
3,791,109	+				+0.5
3,791,110	-				-0.7
3,791,110	-				+0.5
3,791,112	+				-0.2
3,791,112	+				-2.6
3,791,112	+				-0.2
3,791,112	+				-2.7
3,791,112	+				-1.3
3,791,113	-				+1.6
3,791,113	-				+2.4
3,791,118	+				-1.8
3,791,118	+				-2.0
3,791,119	-				-1.9
3,791,119	-				-0.9
3,791,133	+				-1.3
3,791,133	+				+0.4
3,791,134	-				-1.2
3,791,138	+				-2.9
3,791,138	+				-0.9
3,791,138	+				-0.5
3,791,139	-				-1.0
3,791,139	-				+1.2
3,791,208	+				+1.9
3,791,209	-				-0.2
3,791,209	-				-1.0
3,791,209	-				+1.2
3,791,210	+				+0.6
3,791,210	+				-0.0
3,791,210	+				+2.1
3,791,210	+				+2.7
3,791,210	+				+1.1
3,791,210	+				+2.6
3,791,210	+				+2.0
3,791,210	+				-0.5
3,791,210	+				+4.5
3,791,210	+				-0.9
3,791,210	+				-0.0
3,791,210	+				+1.3
3,791,210	+				+0.2
3,791,210	+				+2.8
3,791,210	+				+0.5
3,791,210	+				-0.1
3,791,210	+				+0.3
3,791,210	+				+1.4
3,791,211	-				-0.2
3,791,211	-				+3.1
3,791,211	-				+1.5
3,791,211	-				-2.0
3,791,211	-				+2.2
3,791,211	-				-1.5
3,791,211	-				-1.4
3,791,211	-				+2.2
3,791,211	-				+3.0
3,791,211	-				+1.5
3,791,211	-				+1.4
3,791,211	-				+2.4
3,791,212	+				+1.5
3,791,213	-				+4.9
3,791,213	-				+2.5
3,791,220	+				+0.8
3,791,220	+				+2.2
3,791,220	+				+1.8
3,791,231	+				-1.2
3,791,232	-				+1.8
3,791,241	+				+2.1
3,791,241	+				-0.8
3,791,276	-				+1.5
3,791,282	+				+1.5
3,791,282	+				-0.0
3,791,298	+				+2.4
3,791,299	-				+2.5
3,791,299	-				+1.6
3,791,331	+		Sama_3200	0.11	-0.5
3,791,331	+		Sama_3200	0.11	+2.5
3,791,332	-		Sama_3200	0.12	+2.2
3,791,332	-		Sama_3200	0.12	+1.5
3,791,332	-		Sama_3200	0.12	+1.9
3,791,332	-		Sama_3200	0.12	+1.3
3,791,347	+		Sama_3200	0.15	+1.7
3,791,347	+		Sama_3200	0.15	+1.5
3,791,348	-		Sama_3200	0.15	+1.4
3,791,348	-		Sama_3200	0.15	-0.7
3,791,348	-		Sama_3200	0.15	+0.4
3,791,351	+		Sama_3200	0.15	+0.7
3,791,351	+		Sama_3200	0.15	+2.0
3,791,351	+		Sama_3200	0.15	+1.4
3,791,352	-		Sama_3200	0.16	-0.5
3,791,352	-		Sama_3200	0.16	+2.2
3,791,352	-		Sama_3200	0.16	+3.1
3,791,352	-		Sama_3200	0.16	+3.3
3,791,352	-		Sama_3200	0.16	+2.4
3,791,352	-		Sama_3200	0.16	+1.6
3,791,362	+		Sama_3200	0.18	+3.1
3,791,362	+		Sama_3200	0.18	-0.2
3,791,362	+		Sama_3200	0.18	+0.2
3,791,362	+		Sama_3200	0.18	+3.0
3,791,362	+		Sama_3200	0.18	-0.3
3,791,363	-		Sama_3200	0.18	+0.6
3,791,363	-		Sama_3200	0.18	+2.0
3,791,415	+		Sama_3200	0.29	+1.3
3,791,415	+		Sama_3200	0.29	+3.8
3,791,416	-		Sama_3200	0.29	+1.2
3,791,416	-		Sama_3200	0.29	+4.0
3,791,457	+		Sama_3200	0.37	+2.5
3,791,458	-		Sama_3200	0.37	+5.3
3,791,545	+		Sama_3200	0.55	+1.4
3,791,546	-		Sama_3200	0.56	+1.8
3,791,593	+		Sama_3200	0.65	+1.3
3,791,595	+		Sama_3200	0.66	+2.5
3,791,595	+		Sama_3200	0.66	+0.7
3,791,595	+		Sama_3200	0.66	+1.0
3,791,595	+		Sama_3200	0.66	+1.5
3,791,595	+		Sama_3200	0.66	+2.0
3,791,596	-		Sama_3200	0.66	+1.9
3,791,596	-		Sama_3200	0.66	+1.3
3,791,596	-		Sama_3200	0.66	+1.3
3,791,596	-		Sama_3200	0.66	+2.1
3,791,704	+		Sama_3200	0.88	+1.8
3,791,704	+		Sama_3200	0.88	+1.6
3,791,704	+		Sama_3200	0.88	+3.1
3,791,704	+		Sama_3200	0.88	+2.3
3,791,704	+		Sama_3200	0.88	+0.8
3,791,705	-		Sama_3200	0.88	-1.3
3,791,705	-		Sama_3200	0.88	-0.8
3,791,705	-		Sama_3200	0.88	+1.0
3,791,705	-		Sama_3200	0.88	+0.7
3,791,705	-		Sama_3200	0.88	+2.1
3,791,705	-		Sama_3200	0.88	+1.5
3,791,705	-		Sama_3200	0.88	+1.6
3,791,708	+		Sama_3200	0.89	+2.7
3,791,708	+		Sama_3200	0.89	+1.3
3,791,708	+		Sama_3200	0.89	+2.5
3,791,708	+		Sama_3200	0.89	+2.0
3,791,708	+		Sama_3200	0.89	+1.6
3,791,708	+		Sama_3200	0.89	-1.6
3,791,709	-		Sama_3200	0.89	+1.6
3,791,709	-		Sama_3200	0.89	+1.7
3,791,728	+				+1.5
3,791,728	+				+2.5
3,791,728	+				+1.8
3,791,728	+				+2.0
3,791,729	-				-0.4
3,791,729	-				+2.1
3,791,753	-				+2.1
3,791,754	+				+1.8
3,791,754	+				+0.3
3,791,754	+				+1.5
3,791,754	+				+3.2
3,791,754	+				-3.1
3,791,754	+				+1.8
3,791,755	-				+2.2
3,791,755	-				+5.0
3,791,755	-				-1.1
3,791,755	-				+1.2
3,791,755	-				+1.2
3,791,755	-				+0.5
3,791,759	+				-0.1
3,791,759	+				+1.9
3,791,760	-				+0.4
3,791,760	-				-1.4
3,791,760	-				+0.5
3,791,760	-				+2.8
3,791,760	-				-0.1
3,791,786	+				-1.0
3,791,787	-				+0.5
3,791,892	+				+0.8
3,791,892	+				-0.0
3,791,918	-				-1.4
3,791,918	-				-0.3
3,791,918	-				-1.1
3,791,924	+				-0.2
3,791,924	+				-1.2
3,791,925	-				+0.9
3,792,165	+		Sama_3201	0.23	-2.6
3,792,166	-		Sama_3201	0.23	+0.4
3,792,166	-		Sama_3201	0.23	-2.1
3,792,166	-		Sama_3201	0.23	+0.2
3,792,174	-		Sama_3201	0.24	-2.7
3,792,355	+		Sama_3201	0.41	-1.8
3,792,355	+		Sama_3201	0.41	-1.7
3,792,356	-		Sama_3201	0.42	-1.4
3,792,356	-		Sama_3201	0.42	-0.6
3,792,356	-		Sama_3201	0.42	+0.8
3,792,356	-		Sama_3201	0.42	-2.4
3,792,361	+		Sama_3201	0.42	-2.7
3,792,362	-		Sama_3201	0.42	-1.3
3,792,501	+		Sama_3201	0.55	-2.1
3,792,501	+		Sama_3201	0.55	-1.4
3,792,502	-		Sama_3201	0.56	-1.8
3,792,502	-		Sama_3201	0.56	-2.5
3,792,531	+		Sama_3201	0.58	-2.9
3,792,531	+		Sama_3201	0.58	-0.2
3,792,531	+		Sama_3201	0.58	+0.7
3,792,531	+		Sama_3201	0.58	-0.4
3,792,531	+		Sama_3201	0.58	-0.4
3,792,531	+		Sama_3201	0.58	-1.5
3,792,531	+		Sama_3201	0.58	-1.5
3,792,531	+		Sama_3201	0.58	-2.0
3,792,532	-		Sama_3201	0.58	-0.6
3,792,532	-		Sama_3201	0.58	-2.2
3,792,532	-		Sama_3201	0.58	+0.8
3,792,611	+		Sama_3201	0.66	-2.5
3,792,611	+		Sama_3201	0.66	-1.9
3,792,612	-		Sama_3201	0.66	-1.0
3,792,625	+		Sama_3201	0.67	+2.2
3,792,625	+		Sama_3201	0.67	-1.2
3,792,625	+		Sama_3201	0.67	-2.3
3,792,625	+		Sama_3201	0.67	+0.2
3,792,626	-		Sama_3201	0.68	-2.2
3,792,626	-		Sama_3201	0.68	+0.8
3,792,626	-		Sama_3201	0.68	+0.6
3,792,626	-		Sama_3201	0.68	-2.0
3,792,626	-		Sama_3201	0.68	-0.3
3,792,737	+		Sama_3201	0.78	-1.9
3,792,738	-		Sama_3201	0.78	-2.3
3,792,738	-		Sama_3201	0.78	-0.9
3,792,792	+		Sama_3201	0.84	-0.4
3,792,792	+		Sama_3201	0.84	-2.2
3,792,792	+		Sama_3201	0.84	-1.7
3,792,793	-		Sama_3201	0.84	-3.2
3,792,828	+		Sama_3201	0.87	+1.2
3,792,829	-		Sama_3201	0.87	-0.2
3,792,921	+				-1.8
3,792,921	+				-1.4
3,792,927	+				-0.1
3,792,927	+				-1.6
3,792,927	+				-2.0
3,792,928	-				-3.1
3,792,928	-				-1.5
3,792,928	-				-1.2
3,792,929	+				-2.4
3,792,994	-				-1.8
3,793,000	+				-0.9
3,793,010	+				+0.6
3,793,010	+				+0.0
3,793,010	+				-1.0
3,793,034	+				-0.4
3,793,040	+				+0.6
3,793,040	+				+0.1
3,793,040	+				-1.0
3,793,132	+				-4.0
3,793,162	+				-1.3
3,793,180	+				-1.9
3,793,180	+				+0.5
3,793,180	+				-1.3