Strain Fitness in Shewanella amazonensis SB2B around Sama_2400

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
2,881,846	-				+1.4
2,881,849	+				-2.4
2,881,850	-				+1.8
2,881,850	-				-1.8
2,881,851	+				-0.6
2,881,851	+				+0.2
2,881,851	+				-2.3
2,881,852	-				+0.5
2,881,852	-				-1.1
2,881,852	-				-1.8
2,881,852	-				+0.8
2,881,852	-				-0.1
2,881,852	-				+0.7
2,881,931	-		Sama_2398	0.31	-0.6
2,881,954	-		Sama_2398	0.39	+0.5
2,881,969	+		Sama_2398	0.44	+0.3
2,882,092	+		Sama_2398	0.88	+1.8
2,882,092	+		Sama_2398	0.88	+2.8
2,882,093	-		Sama_2398	0.88	-1.3
2,882,109	-				-1.2
2,882,112	+				+1.3
2,882,112	+				-1.1
2,882,113	-				+0.3
2,882,113	-				-0.6
2,882,128	+				+3.5
2,882,129	-				+0.9
2,882,242	+				+0.4
2,882,242	+				+0.9
2,882,269	-				+2.1
2,882,269	-				+0.3
2,882,351	+		Sama_2399	0.18	-0.1
2,882,355	+		Sama_2399	0.19	+1.4
2,882,356	-		Sama_2399	0.19	+0.5
2,882,356	-		Sama_2399	0.19	+0.0
2,882,356	-		Sama_2399	0.19	+1.5
2,882,376	-		Sama_2399	0.22	-1.8
2,882,571	+		Sama_2399	0.54	-1.0
2,882,571	+		Sama_2399	0.54	-2.1
2,882,572	-		Sama_2399	0.55	-0.3
2,882,595	-		Sama_2399	0.58	+0.5
2,882,676	-		Sama_2399	0.72	+1.2
2,882,697	+		Sama_2399	0.75	+0.8
2,882,808	+				+1.6
2,882,808	+				+0.4
2,882,809	-				+1.5
2,882,809	-				-1.2
2,882,809	-				+1.7
2,882,809	-				-0.5
2,882,833	+				-0.1
2,882,833	+				-0.8
2,882,833	+				-1.3
2,882,833	+				-0.1
2,882,833	+				-0.2
2,882,834	-				+0.6
2,882,834	-				-0.5
2,882,834	-				+0.2
2,882,869	+				+3.1
2,882,870	-				+0.4
2,882,870	-				-0.9
2,882,870	-				-0.1
2,882,870	-				+1.0
2,882,870	-				+1.5
2,882,870	-				+0.1
2,882,870	-				-1.5
2,882,870	-				+1.1
2,882,870	-				+0.5
2,882,870	-				-0.1
2,882,875	+				+0.9
2,882,875	+				+0.5
2,882,875	+				+0.2
2,882,876	-				-1.3
2,882,876	-				-0.6
2,882,876	-				-1.5
2,882,876	-				+1.0
2,882,876	-				-0.9
2,882,876	-				-0.5
2,882,876	-				+1.7
2,882,913	-				+1.4
2,882,913	-				-1.3
2,882,986	-				+0.5
2,882,986	-				+1.8
2,882,998	-				-1.5
2,883,107	+		Sama_2400	0.15	+0.9
2,883,107	+		Sama_2400	0.15	-2.8
2,883,107	+		Sama_2400	0.15	+0.8
2,883,135	+		Sama_2400	0.16	+3.1
2,883,135	+		Sama_2400	0.16	-1.5
2,883,136	-		Sama_2400	0.16	-2.0
2,883,136	-		Sama_2400	0.16	+0.6
2,883,187	+		Sama_2400	0.19	-0.8
2,883,187	+		Sama_2400	0.19	+0.5
2,883,187	+		Sama_2400	0.19	+0.6
2,883,188	-		Sama_2400	0.19	-1.1
2,883,188	-		Sama_2400	0.19	+2.1
2,883,188	-		Sama_2400	0.19	-0.1
2,883,211	-		Sama_2400	0.20	+1.5
2,883,319	-		Sama_2400	0.26	+1.5
2,883,430	+		Sama_2400	0.32	+1.0
2,883,430	+		Sama_2400	0.32	-0.5
2,883,430	+		Sama_2400	0.32	-0.4
2,883,431	-		Sama_2400	0.32	-0.1
2,883,431	-		Sama_2400	0.32	-1.3
2,883,445	-		Sama_2400	0.33	-1.1
2,883,445	-		Sama_2400	0.33	-1.1
2,883,450	+		Sama_2400	0.33	+0.8
2,883,451	-		Sama_2400	0.33	+0.0
2,883,681	-		Sama_2400	0.46	+1.4
2,883,703	+		Sama_2400	0.47	-1.6
2,883,703	+		Sama_2400	0.47	-1.7
2,883,704	-		Sama_2400	0.47	-0.8
2,883,704	-		Sama_2400	0.47	+1.4
2,883,704	-		Sama_2400	0.47	+0.9
2,883,704	-		Sama_2400	0.47	-0.1
2,883,801	+		Sama_2400	0.53	-0.7
2,883,855	+		Sama_2400	0.56	+0.4
2,883,855	+		Sama_2400	0.56	-0.5
2,883,855	+		Sama_2400	0.56	-1.1
2,883,856	-		Sama_2400	0.56	-0.9
2,883,856	-		Sama_2400	0.56	-2.8
2,883,936	+		Sama_2400	0.60	+0.9
2,883,937	-		Sama_2400	0.60	-0.8
2,883,937	-		Sama_2400	0.60	+0.0
2,883,938	+		Sama_2400	0.60	+0.4
2,883,938	+		Sama_2400	0.60	+1.1
2,883,939	-		Sama_2400	0.60	-0.8
2,883,939	-		Sama_2400	0.60	-0.3
2,883,944	+		Sama_2400	0.60	+1.1
2,883,944	+		Sama_2400	0.60	-0.7
2,884,048	+		Sama_2400	0.66	-1.4
2,884,048	+		Sama_2400	0.66	-0.4
2,884,049	-		Sama_2400	0.66	-2.2
2,884,141	+		Sama_2400	0.71	+0.0
2,884,243	-		Sama_2400	0.77	-0.8
2,884,332	+		Sama_2400	0.82	+0.1
2,884,332	+		Sama_2400	0.82	+1.4
2,884,332	+		Sama_2400	0.82	-0.6
2,884,342	+		Sama_2400	0.82	+0.8
2,884,343	-		Sama_2400	0.82	-0.5
2,884,371	-		Sama_2400	0.84	-1.1
2,884,398	+		Sama_2400	0.85	-1.3
2,884,398	+		Sama_2400	0.85	-0.0
2,884,399	-		Sama_2400	0.85	+2.5
2,884,399	-		Sama_2400	0.85	+2.1
2,884,399	-		Sama_2400	0.85	+1.7
2,884,402	-		Sama_2400	0.86	-0.1
2,884,402	-		Sama_2400	0.86	+0.2
2,884,402	-		Sama_2400	0.86	-0.5
2,884,431	+		Sama_2400	0.87	-0.3
2,884,493	+				-0.4
2,884,494	-				+0.1
2,884,494	-				+1.3
2,884,515	+				+0.3
2,884,515	+				+0.5
2,884,515	+				-1.6
2,884,557	+				-0.2
2,884,557	+				+1.1
2,884,557	+				-0.4
2,884,558	-				+1.3
2,884,558	-				-0.9
2,884,558	-				+1.8
2,884,639	+				-0.2
2,884,640	-				-1.3
2,884,643	-				+0.1
2,884,643	-				+1.5
2,884,660	-				+0.1
2,884,668	+				+1.1
2,884,684	+				-0.4
2,884,684	+				-2.1
2,884,685	-				-0.3
2,884,725	+				+1.5
2,884,725	+				+0.5
2,884,760	+				+2.2
2,884,780	+				-1.7
2,884,780	+				+1.4
2,884,780	+				-0.0
2,884,780	+				-1.5
2,884,781	-				+1.3
2,884,781	-				-2.8
2,884,781	-				+0.2
2,884,781	-				-0.4
2,884,781	-				+2.8
2,884,781	-				+0.3
2,884,781	-				-0.2
2,884,781	-				-2.2
2,884,782	+				-0.1
2,884,782	+				+0.3
2,884,782	+				+2.5
2,884,782	+				+0.2
2,884,782	+				+0.3
2,884,782	+				-1.2
2,884,783	-				-0.4
2,884,783	-				-1.3
2,884,783	-				-0.1
2,884,783	-				-2.9
2,884,783	-				-1.1
2,884,783	-				-0.3
2,884,783	-				+0.7
2,884,783	-				+1.3
2,884,783	-				-1.3
2,884,784	+				+0.3
2,884,784	+				-0.4
2,884,838	+				-0.8
2,884,839	-				+0.2
2,884,839	-				-1.3
2,884,984	+				-1.7
2,885,051	+		Sama_2401	0.14	+0.3
2,885,052	-		Sama_2401	0.14	+0.1
2,885,052	-		Sama_2401	0.14	-3.1
2,885,052	-		Sama_2401	0.14	+0.9
2,885,052	-		Sama_2401	0.14	-1.8
2,885,052	-		Sama_2401	0.14	-2.3
2,885,052	-		Sama_2401	0.14	+1.7
2,885,293	+		Sama_2401	0.30	-0.1
2,885,293	+		Sama_2401	0.30	+1.8
2,885,294	-		Sama_2401	0.30	-0.4
2,885,294	-		Sama_2401	0.30	-0.3
2,885,294	-		Sama_2401	0.30	-3.0
2,885,331	+		Sama_2401	0.32	-0.6
2,885,359	+		Sama_2401	0.34	-0.5
2,885,360	-		Sama_2401	0.34	-0.1
2,885,360	-		Sama_2401	0.34	-1.9
2,885,382	+		Sama_2401	0.36	+0.2
2,885,382	+		Sama_2401	0.36	-1.3
2,885,382	+		Sama_2401	0.36	-0.8
2,885,383	-		Sama_2401	0.36	-2.8
2,885,383	-		Sama_2401	0.36	-1.0
2,885,383	-		Sama_2401	0.36	-1.5
2,885,383	-		Sama_2401	0.36	-1.5
2,885,383	-		Sama_2401	0.36	-1.2
2,885,384	+		Sama_2401	0.36	-2.1
2,885,385	-		Sama_2401	0.36	+2.0
2,885,396	-		Sama_2401	0.37	+0.5
2,885,396	-		Sama_2401	0.37	-1.3
2,885,485	-		Sama_2401	0.43	-1.8
2,885,637	+		Sama_2401	0.53	+0.9
2,885,638	-		Sama_2401	0.53	+1.2
2,885,638	-		Sama_2401	0.53	+1.9
2,885,638	-		Sama_2401	0.53	-0.1