Experiment: Anaero. fumarate (e.a.)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2010 and Sama_2011 are separated by 343 nucleotides Sama_2011 and Sama_2012 are separated by 19 nucleotides
Sama_2010: Sama_2010 - putative chaperone (RefSeq), at 2,441,656 to 2,443,008
_2010
Sama_2011: Sama_2011 - polyphosphate kinase (RefSeq), at 2,443,352 to 2,445,544
_2011
Sama_2012: Sama_2012 - guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq), at 2,445,564 to 2,447,072
_2012
Position (kb)
2443
2444
2445
2446 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2442.474 kb on + strand, within Sama_2010 at 2442.474 kb on + strand, within Sama_2010 at 2442.475 kb on - strand, within Sama_2010 at 2442.475 kb on - strand, within Sama_2010 at 2442.489 kb on + strand, within Sama_2010 at 2442.606 kb on + strand, within Sama_2010 at 2442.610 kb on + strand, within Sama_2010 at 2442.610 kb on + strand, within Sama_2010 at 2442.610 kb on + strand, within Sama_2010 at 2442.610 kb on + strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.611 kb on - strand, within Sama_2010 at 2442.711 kb on - strand, within Sama_2010 at 2442.760 kb on + strand, within Sama_2010 at 2442.890 kb on + strand at 2442.890 kb on + strand at 2442.891 kb on - strand at 2442.891 kb on - strand at 2442.891 kb on - strand at 2442.943 kb on + strand at 2442.944 kb on - strand at 2442.962 kb on - strand at 2442.990 kb on - strand at 2443.045 kb on + strand at 2443.085 kb on - strand at 2443.124 kb on + strand at 2443.160 kb on + strand at 2443.161 kb on - strand at 2443.209 kb on + strand at 2443.209 kb on + strand at 2443.209 kb on + strand at 2443.210 kb on - strand at 2443.320 kb on + strand at 2443.396 kb on + strand at 2443.525 kb on + strand at 2443.600 kb on + strand, within Sama_2011 at 2443.673 kb on + strand, within Sama_2011 at 2443.710 kb on + strand, within Sama_2011 at 2443.710 kb on + strand, within Sama_2011 at 2443.711 kb on - strand, within Sama_2011 at 2443.718 kb on - strand, within Sama_2011 at 2443.782 kb on + strand, within Sama_2011 at 2443.792 kb on + strand, within Sama_2011 at 2443.793 kb on - strand, within Sama_2011 at 2443.795 kb on - strand, within Sama_2011 at 2443.795 kb on - strand, within Sama_2011 at 2443.795 kb on - strand, within Sama_2011 at 2443.795 kb on - strand, within Sama_2011 at 2443.795 kb on - strand, within Sama_2011 at 2443.795 kb on - strand, within Sama_2011 at 2443.838 kb on - strand, within Sama_2011 at 2443.838 kb on - strand, within Sama_2011 at 2443.856 kb on + strand, within Sama_2011 at 2443.856 kb on + strand, within Sama_2011 at 2443.857 kb on - strand, within Sama_2011 at 2443.857 kb on - strand, within Sama_2011 at 2443.857 kb on - strand, within Sama_2011 at 2443.857 kb on - strand, within Sama_2011 at 2443.895 kb on + strand, within Sama_2011 at 2443.895 kb on + strand, within Sama_2011 at 2443.896 kb on - strand, within Sama_2011 at 2443.896 kb on - strand, within Sama_2011 at 2443.896 kb on - strand, within Sama_2011 at 2443.991 kb on - strand, within Sama_2011 at 2443.991 kb on - strand, within Sama_2011 at 2443.991 kb on - strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.049 kb on + strand, within Sama_2011 at 2444.050 kb on - strand, within Sama_2011 at 2444.050 kb on - strand, within Sama_2011 at 2444.057 kb on + strand, within Sama_2011 at 2444.058 kb on - strand, within Sama_2011 at 2444.178 kb on + strand, within Sama_2011 at 2444.178 kb on + strand, within Sama_2011 at 2444.178 kb on + strand, within Sama_2011 at 2444.179 kb on - strand, within Sama_2011 at 2444.180 kb on + strand, within Sama_2011 at 2444.181 kb on - strand, within Sama_2011 at 2444.270 kb on + strand, within Sama_2011 at 2444.282 kb on - strand, within Sama_2011 at 2444.318 kb on + strand, within Sama_2011 at 2444.319 kb on - strand, within Sama_2011 at 2444.319 kb on - strand, within Sama_2011 at 2444.408 kb on - strand, within Sama_2011 at 2444.408 kb on - strand, within Sama_2011 at 2444.418 kb on - strand, within Sama_2011 at 2444.590 kb on - strand, within Sama_2011 at 2444.634 kb on + strand, within Sama_2011 at 2444.659 kb on - strand, within Sama_2011 at 2444.686 kb on - strand, within Sama_2011 at 2444.686 kb on - strand, within Sama_2011 at 2444.686 kb on - strand, within Sama_2011 at 2444.686 kb on - strand, within Sama_2011 at 2444.784 kb on + strand, within Sama_2011 at 2444.784 kb on + strand, within Sama_2011 at 2444.784 kb on + strand, within Sama_2011 at 2444.784 kb on + strand, within Sama_2011 at 2444.784 kb on + strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.785 kb on - strand, within Sama_2011 at 2444.786 kb on + strand, within Sama_2011 at 2444.786 kb on + strand, within Sama_2011 at 2444.787 kb on - strand, within Sama_2011 at 2444.787 kb on - strand, within Sama_2011 at 2444.787 kb on - strand, within Sama_2011 at 2444.787 kb on - strand, within Sama_2011 at 2444.788 kb on + strand, within Sama_2011 at 2444.788 kb on + strand, within Sama_2011 at 2444.789 kb on - strand, within Sama_2011 at 2444.797 kb on - strand, within Sama_2011 at 2444.845 kb on - strand, within Sama_2011 at 2445.032 kb on + strand, within Sama_2011 at 2445.032 kb on + strand, within Sama_2011 at 2445.080 kb on - strand, within Sama_2011 at 2445.136 kb on + strand, within Sama_2011 at 2445.235 kb on + strand, within Sama_2011 at 2445.236 kb on - strand, within Sama_2011 at 2445.236 kb on - strand, within Sama_2011 at 2445.236 kb on - strand, within Sama_2011 at 2445.303 kb on + strand, within Sama_2011 at 2445.303 kb on + strand, within Sama_2011 at 2445.303 kb on + strand, within Sama_2011 at 2445.303 kb on + strand, within Sama_2011 at 2445.304 kb on - strand, within Sama_2011 at 2445.304 kb on - strand, within Sama_2011 at 2445.304 kb on - strand, within Sama_2011 at 2445.304 kb on - strand, within Sama_2011 at 2445.328 kb on + strand at 2445.328 kb on + strand at 2445.328 kb on + strand at 2445.385 kb on + strand at 2445.392 kb on - strand at 2445.396 kb on + strand at 2445.397 kb on - strand at 2445.397 kb on - strand at 2445.415 kb on - strand at 2445.416 kb on + strand at 2445.416 kb on + strand at 2445.416 kb on + strand at 2445.416 kb on + strand at 2445.416 kb on + strand at 2445.417 kb on - strand at 2445.417 kb on - strand at 2445.422 kb on + strand at 2445.481 kb on - strand at 2445.518 kb on - strand at 2445.518 kb on - strand at 2445.685 kb on + strand at 2445.717 kb on + strand, within Sama_2012 at 2445.717 kb on + strand, within Sama_2012 at 2445.811 kb on + strand, within Sama_2012 at 2445.811 kb on + strand, within Sama_2012 at 2445.812 kb on - strand, within Sama_2012 at 2445.923 kb on + strand, within Sama_2012 at 2445.924 kb on - strand, within Sama_2012 at 2445.924 kb on - strand, within Sama_2012 at 2445.927 kb on + strand, within Sama_2012 at 2445.928 kb on - strand, within Sama_2012 at 2445.965 kb on + strand, within Sama_2012 at 2445.966 kb on - strand, within Sama_2012 at 2445.974 kb on + strand, within Sama_2012 at 2445.975 kb on - strand, within Sama_2012 at 2446.030 kb on + strand, within Sama_2012 at 2446.030 kb on + strand, within Sama_2012 at 2446.031 kb on - strand, within Sama_2012 at 2446.065 kb on + strand, within Sama_2012 at 2446.065 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.102 kb on + strand, within Sama_2012 at 2446.103 kb on - strand, within Sama_2012 at 2446.103 kb on - strand, within Sama_2012 at 2446.103 kb on - strand, within Sama_2012 at 2446.103 kb on - strand, within Sama_2012 at 2446.273 kb on + strand, within Sama_2012 at 2446.274 kb on - strand, within Sama_2012 at 2446.382 kb on + strand, within Sama_2012 at 2446.455 kb on + strand, within Sama_2012 at 2446.504 kb on + strand, within Sama_2012 at 2446.524 kb on + strand, within Sama_2012 at 2446.524 kb on + strand, within Sama_2012 at 2446.525 kb on - strand, within Sama_2012 at 2446.525 kb on - strand, within Sama_2012 at 2446.536 kb on - strand, within Sama_2012
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate (e.a.) remove 2,442,474 + Sama_2010 0.60 +1.5 2,442,474 + Sama_2010 0.60 -1.1 2,442,475 - Sama_2010 0.61 -0.2 2,442,475 - Sama_2010 0.61 +0.0 2,442,489 + Sama_2010 0.62 +0.0 2,442,606 + Sama_2010 0.70 -1.0 2,442,610 + Sama_2010 0.71 -0.7 2,442,610 + Sama_2010 0.71 -0.2 2,442,610 + Sama_2010 0.71 -0.2 2,442,610 + Sama_2010 0.71 -0.8 2,442,611 - Sama_2010 0.71 +0.5 2,442,611 - Sama_2010 0.71 +0.1 2,442,611 - Sama_2010 0.71 -0.6 2,442,611 - Sama_2010 0.71 -1.0 2,442,611 - Sama_2010 0.71 +2.1 2,442,611 - Sama_2010 0.71 -0.0 2,442,611 - Sama_2010 0.71 -2.6 2,442,611 - Sama_2010 0.71 +0.9 2,442,711 - Sama_2010 0.78 +2.1 2,442,760 + Sama_2010 0.82 +0.5 2,442,890 + +0.6 2,442,890 + -1.5 2,442,891 - -0.2 2,442,891 - +1.5 2,442,891 - +0.3 2,442,943 + +0.5 2,442,944 - -0.1 2,442,962 - -1.0 2,442,990 - -1.9 2,443,045 + +3.3 2,443,085 - -2.6 2,443,124 + -2.4 2,443,160 + -1.7 2,443,161 - +1.0 2,443,209 + +0.1 2,443,209 + -2.1 2,443,209 + +2.1 2,443,210 - -0.2 2,443,320 + +1.8 2,443,396 + -0.7 2,443,525 + +1.2 2,443,600 + Sama_2011 0.11 -0.0 2,443,673 + Sama_2011 0.15 -1.4 2,443,710 + Sama_2011 0.16 -0.2 2,443,710 + Sama_2011 0.16 +0.2 2,443,711 - Sama_2011 0.16 -1.5 2,443,718 - Sama_2011 0.17 +0.3 2,443,782 + Sama_2011 0.20 +0.3 2,443,792 + Sama_2011 0.20 +1.6 2,443,793 - Sama_2011 0.20 +0.4 2,443,795 - Sama_2011 0.20 -0.7 2,443,795 - Sama_2011 0.20 -0.6 2,443,795 - Sama_2011 0.20 -0.7 2,443,795 - Sama_2011 0.20 -1.0 2,443,795 - Sama_2011 0.20 +0.6 2,443,795 - Sama_2011 0.20 +0.5 2,443,838 - Sama_2011 0.22 +2.6 2,443,838 - Sama_2011 0.22 -2.1 2,443,856 + Sama_2011 0.23 -2.2 2,443,856 + Sama_2011 0.23 -1.0 2,443,857 - Sama_2011 0.23 +0.4 2,443,857 - Sama_2011 0.23 -2.6 2,443,857 - Sama_2011 0.23 -0.5 2,443,857 - Sama_2011 0.23 -1.1 2,443,895 + Sama_2011 0.25 -0.9 2,443,895 + Sama_2011 0.25 -0.9 2,443,896 - Sama_2011 0.25 +0.9 2,443,896 - Sama_2011 0.25 +1.0 2,443,896 - Sama_2011 0.25 -2.0 2,443,991 - Sama_2011 0.29 +0.8 2,443,991 - Sama_2011 0.29 +1.0 2,443,991 - Sama_2011 0.29 -0.8 2,444,049 + Sama_2011 0.32 -0.4 2,444,049 + Sama_2011 0.32 +0.2 2,444,049 + Sama_2011 0.32 +0.9 2,444,049 + Sama_2011 0.32 -2.7 2,444,049 + Sama_2011 0.32 -1.6 2,444,049 + Sama_2011 0.32 -1.1 2,444,049 + Sama_2011 0.32 -0.7 2,444,049 + Sama_2011 0.32 +1.5 2,444,049 + Sama_2011 0.32 +0.3 2,444,050 - Sama_2011 0.32 +0.2 2,444,050 - Sama_2011 0.32 -2.1 2,444,057 + Sama_2011 0.32 -0.8 2,444,058 - Sama_2011 0.32 -0.7 2,444,178 + Sama_2011 0.38 -2.0 2,444,178 + Sama_2011 0.38 +0.8 2,444,178 + Sama_2011 0.38 +0.4 2,444,179 - Sama_2011 0.38 +0.2 2,444,180 + Sama_2011 0.38 -1.5 2,444,181 - Sama_2011 0.38 +0.6 2,444,270 + Sama_2011 0.42 -2.5 2,444,282 - Sama_2011 0.42 +0.1 2,444,318 + Sama_2011 0.44 -2.0 2,444,319 - Sama_2011 0.44 -1.2 2,444,319 - Sama_2011 0.44 -1.0 2,444,408 - Sama_2011 0.48 +0.9 2,444,408 - Sama_2011 0.48 -0.2 2,444,418 - Sama_2011 0.49 +0.1 2,444,590 - Sama_2011 0.56 -0.2 2,444,634 + Sama_2011 0.58 +0.2 2,444,659 - Sama_2011 0.60 +1.0 2,444,686 - Sama_2011 0.61 -0.5 2,444,686 - Sama_2011 0.61 -0.1 2,444,686 - Sama_2011 0.61 +0.1 2,444,686 - Sama_2011 0.61 -0.9 2,444,784 + Sama_2011 0.65 +0.2 2,444,784 + Sama_2011 0.65 -1.1 2,444,784 + Sama_2011 0.65 +1.5 2,444,784 + Sama_2011 0.65 +1.0 2,444,784 + Sama_2011 0.65 +0.6 2,444,785 - Sama_2011 0.65 +0.3 2,444,785 - Sama_2011 0.65 -2.1 2,444,785 - Sama_2011 0.65 +0.3 2,444,785 - Sama_2011 0.65 -0.7 2,444,785 - Sama_2011 0.65 +0.0 2,444,785 - Sama_2011 0.65 +0.8 2,444,785 - Sama_2011 0.65 +1.1 2,444,785 - Sama_2011 0.65 -1.2 2,444,786 + Sama_2011 0.65 -1.2 2,444,786 + Sama_2011 0.65 -0.2 2,444,787 - Sama_2011 0.65 -2.7 2,444,787 - Sama_2011 0.65 +0.5 2,444,787 - Sama_2011 0.65 +0.7 2,444,787 - Sama_2011 0.65 -0.2 2,444,788 + Sama_2011 0.65 -0.7 2,444,788 + Sama_2011 0.65 +1.1 2,444,789 - Sama_2011 0.66 +0.8 2,444,797 - Sama_2011 0.66 -0.5 2,444,845 - Sama_2011 0.68 -1.7 2,445,032 + Sama_2011 0.77 -0.2 2,445,032 + Sama_2011 0.77 +1.3 2,445,080 - Sama_2011 0.79 +0.7 2,445,136 + Sama_2011 0.81 -1.0 2,445,235 + Sama_2011 0.86 +1.6 2,445,236 - Sama_2011 0.86 +0.5 2,445,236 - Sama_2011 0.86 -2.0 2,445,236 - Sama_2011 0.86 -0.4 2,445,303 + Sama_2011 0.89 -0.9 2,445,303 + Sama_2011 0.89 -0.2 2,445,303 + Sama_2011 0.89 -0.5 2,445,303 + Sama_2011 0.89 -0.2 2,445,304 - Sama_2011 0.89 -1.0 2,445,304 - Sama_2011 0.89 -1.2 2,445,304 - Sama_2011 0.89 -0.8 2,445,304 - Sama_2011 0.89 -0.9 2,445,328 + -0.7 2,445,328 + +0.8 2,445,328 + -1.3 2,445,385 + +1.3 2,445,392 - +2.8 2,445,396 + -0.1 2,445,397 - -0.7 2,445,397 - +0.9 2,445,415 - -0.8 2,445,416 + -0.4 2,445,416 + -1.2 2,445,416 + -1.2 2,445,416 + -2.2 2,445,416 + +0.2 2,445,417 - +2.5 2,445,417 - +0.7 2,445,422 + +2.3 2,445,481 - -1.6 2,445,518 - +1.3 2,445,518 - +1.7 2,445,685 + -0.2 2,445,717 + Sama_2012 0.10 +0.7 2,445,717 + Sama_2012 0.10 -2.0 2,445,811 + Sama_2012 0.16 +2.2 2,445,811 + Sama_2012 0.16 +1.5 2,445,812 - Sama_2012 0.16 -1.2 2,445,923 + Sama_2012 0.24 -1.2 2,445,924 - Sama_2012 0.24 +0.8 2,445,924 - Sama_2012 0.24 -0.1 2,445,927 + Sama_2012 0.24 -0.5 2,445,928 - Sama_2012 0.24 +1.8 2,445,965 + Sama_2012 0.27 +1.0 2,445,966 - Sama_2012 0.27 -1.2 2,445,974 + Sama_2012 0.27 +0.2 2,445,975 - Sama_2012 0.27 -1.8 2,446,030 + Sama_2012 0.31 -0.2 2,446,030 + Sama_2012 0.31 +1.3 2,446,031 - Sama_2012 0.31 -0.2 2,446,065 + Sama_2012 0.33 +0.1 2,446,065 + Sama_2012 0.33 +0.9 2,446,102 + Sama_2012 0.36 +0.2 2,446,102 + Sama_2012 0.36 -0.3 2,446,102 + Sama_2012 0.36 +0.0 2,446,102 + Sama_2012 0.36 +1.3 2,446,102 + Sama_2012 0.36 +1.0 2,446,102 + Sama_2012 0.36 +2.3 2,446,102 + Sama_2012 0.36 -0.7 2,446,103 - Sama_2012 0.36 -2.0 2,446,103 - Sama_2012 0.36 -0.8 2,446,103 - Sama_2012 0.36 +1.0 2,446,103 - Sama_2012 0.36 +3.8 2,446,273 + Sama_2012 0.47 +0.6 2,446,274 - Sama_2012 0.47 +2.1 2,446,382 + Sama_2012 0.54 +0.8 2,446,455 + Sama_2012 0.59 +2.0 2,446,504 + Sama_2012 0.62 +3.3 2,446,524 + Sama_2012 0.64 -0.2 2,446,524 + Sama_2012 0.64 +1.3 2,446,525 - Sama_2012 0.64 +1.3 2,446,525 - Sama_2012 0.64 +1.0 2,446,536 - Sama_2012 0.64 +1.3
Or see this region's nucleotide sequence