Strain Fitness in Shewanella amazonensis SB2B around Sama_1905

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
2,329,887	+		Sama_1904	0.51	-0.0
2,329,888	-		Sama_1904	0.51	+0.7
2,329,948	-		Sama_1904	0.55	-0.6
2,329,981	+		Sama_1904	0.57	+1.0
2,330,084	+		Sama_1904	0.63	+0.5
2,330,084	+		Sama_1904	0.63	+1.0
2,330,084	+		Sama_1904	0.63	+0.4
2,330,085	-		Sama_1904	0.63	+1.0
2,330,246	+		Sama_1904	0.72	+1.2
2,330,246	+		Sama_1904	0.72	-1.0
2,330,246	+		Sama_1904	0.72	+0.4
2,330,246	+		Sama_1904	0.72	-1.7
2,330,246	+		Sama_1904	0.72	-1.1
2,330,247	-		Sama_1904	0.72	-1.2
2,330,247	-		Sama_1904	0.72	-0.7
2,330,312	+		Sama_1904	0.76	-1.0
2,330,368	+		Sama_1904	0.79	+1.0
2,330,372	+		Sama_1904	0.80	-1.5
2,330,372	+		Sama_1904	0.80	+1.4
2,330,372	+		Sama_1904	0.80	+2.0
2,330,372	+		Sama_1904	0.80	+0.3
2,330,372	+		Sama_1904	0.80	+0.3
2,330,373	-		Sama_1904	0.80	+1.3
2,330,373	-		Sama_1904	0.80	-0.7
2,330,373	-		Sama_1904	0.80	-0.2
2,330,425	+		Sama_1904	0.83	+1.3
2,330,454	+		Sama_1904	0.84	+1.1
2,330,502	+		Sama_1904	0.87	+0.1
2,330,503	-		Sama_1904	0.87	+1.5
2,330,506	+		Sama_1904	0.87	-0.3
2,330,617	+				+0.2
2,330,618	-				-0.4
2,330,618	-				-0.6
2,330,638	+				+0.7
2,330,638	+				+0.5
2,330,692	+				+0.9
2,330,736	+				+1.3
2,330,901	+				-0.3
2,330,902	-				-0.2
2,330,926	+				-1.0
2,331,055	+				+1.3
2,331,056	-				-0.4
2,331,056	-				-1.0
2,331,148	+		Sama_1905	0.11	+0.7
2,331,182	-		Sama_1905	0.12	-1.0
2,331,182	-		Sama_1905	0.12	+1.7
2,331,189	-		Sama_1905	0.12	+1.7
2,331,203	-		Sama_1905	0.12	+1.0
2,331,266	-		Sama_1905	0.14	-1.5
2,331,272	-		Sama_1905	0.15	+0.9
2,331,289	+		Sama_1905	0.15	-2.0
2,331,290	-		Sama_1905	0.15	-1.3
2,331,290	-		Sama_1905	0.15	+0.7
2,331,290	-		Sama_1905	0.15	+0.7
2,331,290	-		Sama_1905	0.15	-0.3
2,331,290	-		Sama_1905	0.15	-0.1
2,331,291	+		Sama_1905	0.15	-1.3
2,331,291	+		Sama_1905	0.15	-0.3
2,331,292	-		Sama_1905	0.15	-1.5
2,331,292	-		Sama_1905	0.15	-2.5
2,331,292	-		Sama_1905	0.15	+1.4
2,331,292	-		Sama_1905	0.15	+0.1
2,331,292	-		Sama_1905	0.15	-0.4
2,331,292	-		Sama_1905	0.15	-0.3
2,331,292	-		Sama_1905	0.15	+1.8
2,331,324	-		Sama_1905	0.16	+0.6
2,331,324	-		Sama_1905	0.16	+0.6
2,331,355	-		Sama_1905	0.17	+2.2
2,331,355	-		Sama_1905	0.17	-0.6
2,331,355	-		Sama_1905	0.17	+1.3
2,331,355	-		Sama_1905	0.17	-0.8
2,331,378	+		Sama_1905	0.18	-0.6
2,331,426	+		Sama_1905	0.20	-0.3
2,331,427	-		Sama_1905	0.20	-2.0
2,331,435	-		Sama_1905	0.20	+1.5
2,331,473	-		Sama_1905	0.21	+0.1
2,331,473	-		Sama_1905	0.21	-2.3
2,331,473	-		Sama_1905	0.21	+2.4
2,331,473	-		Sama_1905	0.21	+1.2
2,331,474	+		Sama_1905	0.21	-0.3
2,331,475	-		Sama_1905	0.21	+1.7
2,331,558	-		Sama_1905	0.24	+1.8
2,331,558	-		Sama_1905	0.24	-0.3
2,331,584	+		Sama_1905	0.25	-0.3
2,331,612	+		Sama_1905	0.26	+0.3
2,331,612	+		Sama_1905	0.26	-0.6
2,331,612	+		Sama_1905	0.26	-1.3
2,331,612	+		Sama_1905	0.26	-1.5
2,331,612	+		Sama_1905	0.26	+1.5
2,331,613	-		Sama_1905	0.26	-2.0
2,331,613	-		Sama_1905	0.26	+3.9
2,331,676	-		Sama_1905	0.28	+0.3
2,331,676	-		Sama_1905	0.28	-0.1
2,331,676	-		Sama_1905	0.28	-0.0
2,331,676	-		Sama_1905	0.28	-2.2
2,331,676	-		Sama_1905	0.28	-0.7
2,331,676	-		Sama_1905	0.28	-0.0
2,331,676	-		Sama_1905	0.28	+0.2
2,331,695	-		Sama_1905	0.28	+0.6
2,331,736	+		Sama_1905	0.30	+0.3
2,331,908	-		Sama_1905	0.35	+0.7
2,332,079	-		Sama_1905	0.41	-0.2
2,332,127	-		Sama_1905	0.42	-2.2
2,332,127	-		Sama_1905	0.42	+0.3
2,332,192	-		Sama_1905	0.44	+0.8
2,332,204	-		Sama_1905	0.45	+0.4
2,332,204	-		Sama_1905	0.45	-0.3
2,332,256	-		Sama_1905	0.46	+2.8
2,332,380	+		Sama_1905	0.50	+1.8
2,332,381	-		Sama_1905	0.50	+0.9
2,332,479	-		Sama_1905	0.54	-2.0
2,332,479	-		Sama_1905	0.54	+1.4
2,332,479	-		Sama_1905	0.54	+0.0
2,332,485	-		Sama_1905	0.54	+1.3
2,332,679	+		Sama_1905	0.60	-0.8
2,332,680	-		Sama_1905	0.60	+0.8
2,332,691	+		Sama_1905	0.60	+0.1
2,332,691	+		Sama_1905	0.60	-1.0
2,332,730	-		Sama_1905	0.62	+0.7
2,332,730	-		Sama_1905	0.62	-0.4
2,332,789	-		Sama_1905	0.64	+0.2
2,332,828	+		Sama_1905	0.65	-1.3
2,332,829	-		Sama_1905	0.65	-1.5
2,332,840	+		Sama_1905	0.65	+2.3
2,332,841	-		Sama_1905	0.65	+0.4
2,332,906	+		Sama_1905	0.67	+0.2
2,332,907	-		Sama_1905	0.67	-0.1
2,332,917	+		Sama_1905	0.68	-2.2
2,332,917	+		Sama_1905	0.68	+0.2
2,332,918	-		Sama_1905	0.68	-0.1
2,332,918	-		Sama_1905	0.68	+0.1
2,332,918	-		Sama_1905	0.68	-1.0
2,332,918	-		Sama_1905	0.68	-1.8
2,332,918	-		Sama_1905	0.68	-0.1
2,332,920	-		Sama_1905	0.68	-0.5
2,332,920	-		Sama_1905	0.68	+0.3
2,332,943	-		Sama_1905	0.69	-1.6
2,333,189	+		Sama_1905	0.76	-0.5
2,333,189	+		Sama_1905	0.76	+0.5
2,333,224	+		Sama_1905	0.78	-0.3
2,333,224	+		Sama_1905	0.78	+1.7
2,333,225	-		Sama_1905	0.78	+2.7
2,333,242	+		Sama_1905	0.78	-0.2
2,333,242	+		Sama_1905	0.78	+1.4
2,333,243	-		Sama_1905	0.78	+1.9
2,333,376	+		Sama_1905	0.82	+2.0
2,333,376	+		Sama_1905	0.82	-1.6
2,333,377	-		Sama_1905	0.82	+0.1
2,333,443	-		Sama_1905	0.85	+0.3
2,333,454	+		Sama_1905	0.85	-2.2
2,333,578	+		Sama_1905	0.89	-0.8
2,333,579	-		Sama_1905	0.89	+1.3
2,333,812	-				+0.1
2,333,967	+				+0.8
2,334,072	+		Sama_1906	0.14	+0.7
2,334,126	+		Sama_1906	0.19	+1.9
2,334,126	+		Sama_1906	0.19	-0.3
2,334,127	-		Sama_1906	0.19	-1.3
2,334,127	-		Sama_1906	0.19	-0.6
2,334,127	-		Sama_1906	0.19	+0.0
2,334,128	+		Sama_1906	0.19	-2.2
2,334,128	+		Sama_1906	0.19	-0.3
2,334,128	+		Sama_1906	0.19	-0.0
2,334,128	+		Sama_1906	0.19	+0.3
2,334,128	+		Sama_1906	0.19	-0.6
2,334,129	-		Sama_1906	0.20	+2.5
2,334,129	-		Sama_1906	0.20	+0.6
2,334,129	-		Sama_1906	0.20	+0.9
2,334,129	-		Sama_1906	0.20	+0.7
2,334,129	-		Sama_1906	0.20	-0.3
2,334,129	-		Sama_1906	0.20	-2.0
2,334,130	+		Sama_1906	0.20	+2.9
2,334,130	+		Sama_1906	0.20	+1.3
2,334,130	+		Sama_1906	0.20	+0.7
2,334,130	+		Sama_1906	0.20	+0.5
2,334,130	+		Sama_1906	0.20	+0.9
2,334,130	+		Sama_1906	0.20	+2.3
2,334,130	+		Sama_1906	0.20	+1.1
2,334,130	+		Sama_1906	0.20	+2.1
2,334,130	+		Sama_1906	0.20	-0.4
2,334,130	+		Sama_1906	0.20	-1.9
2,334,130	+		Sama_1906	0.20	-0.1
2,334,130	+		Sama_1906	0.20	-2.7
2,334,130	+		Sama_1906	0.20	+1.0
2,334,130	+		Sama_1906	0.20	+0.3
2,334,130	+		Sama_1906	0.20	+0.1
2,334,130	+		Sama_1906	0.20	-0.7
2,334,130	+		Sama_1906	0.20	-0.1
2,334,131	-		Sama_1906	0.20	+0.5
2,334,131	-		Sama_1906	0.20	-1.3
2,334,131	-		Sama_1906	0.20	-0.5
2,334,131	-		Sama_1906	0.20	-2.2
2,334,131	-		Sama_1906	0.20	+1.5
2,334,131	-		Sama_1906	0.20	+1.3
2,334,131	-		Sama_1906	0.20	-0.1
2,334,131	-		Sama_1906	0.20	-0.3
2,334,131	-		Sama_1906	0.20	-1.3
2,334,131	-		Sama_1906	0.20	-2.3
2,334,131	-		Sama_1906	0.20	+1.4
2,334,131	-		Sama_1906	0.20	-0.3
2,334,131	-		Sama_1906	0.20	-1.5
2,334,134	+		Sama_1906	0.20	-0.7
2,334,134	+		Sama_1906	0.20	-0.3
2,334,134	+		Sama_1906	0.20	+1.5
2,334,134	+		Sama_1906	0.20	-2.1
2,334,134	+		Sama_1906	0.20	-1.5
2,334,134	+		Sama_1906	0.20	-1.4
2,334,135	-		Sama_1906	0.20	+1.9
2,334,135	-		Sama_1906	0.20	-1.3
2,334,135	-		Sama_1906	0.20	+0.2
2,334,135	-		Sama_1906	0.20	-1.0
2,334,154	+		Sama_1906	0.22	-0.1
2,334,155	-		Sama_1906	0.22	-0.3
2,334,156	+		Sama_1906	0.22	+0.1
2,334,157	-		Sama_1906	0.22	+0.1
2,334,157	-		Sama_1906	0.22	-1.9
2,334,177	+		Sama_1906	0.24	-1.3
2,334,177	+		Sama_1906	0.24	-1.0
2,334,178	-		Sama_1906	0.24	-2.2
2,334,266	-		Sama_1906	0.32	+0.6
2,334,283	-		Sama_1906	0.34	+0.4
2,334,313	+		Sama_1906	0.36	+1.1
2,334,313	+		Sama_1906	0.36	-0.7
2,334,314	-		Sama_1906	0.37	-1.5
2,334,388	+		Sama_1906	0.43	-0.2
2,334,576	+		Sama_1906	0.61	-1.5
2,334,577	-		Sama_1906	0.61	+1.6
2,334,577	-		Sama_1906	0.61	-0.6
2,334,577	-		Sama_1906	0.61	+1.0
2,334,679	-		Sama_1906	0.70	-0.3
2,334,754	-		Sama_1906	0.77	+0.9
2,334,792	+		Sama_1906	0.81	-1.0
2,334,804	+		Sama_1906	0.82	+0.8
2,334,805	-		Sama_1906	0.82	+1.2
2,334,805	-		Sama_1906	0.82	+0.1
2,334,860	-		Sama_1906	0.87	-0.2
2,334,860	-		Sama_1906	0.87	+2.1
2,334,874	+		Sama_1906	0.88	-2.5
2,334,874	+		Sama_1906	0.88	+0.7
2,334,875	-		Sama_1906	0.88	-0.7
2,334,875	-		Sama_1906	0.88	-0.7