Strain Fitness in Shewanella amazonensis SB2B around Sama_1677

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
2,050,011	+		Sama_1675	0.84	-0.6
2,050,012	-		Sama_1675	0.84	-2.0
2,050,145	-				-0.7
2,050,233	+				-0.1
2,050,295	+				-2.4
2,050,316	-				-1.1
2,050,431	+		Sama_1676	0.25	+0.0
2,050,453	-		Sama_1676	0.28	-3.3
2,050,453	-		Sama_1676	0.28	+1.2
2,050,453	-		Sama_1676	0.28	+1.2
2,050,498	+		Sama_1676	0.37	-0.6
2,050,680	-		Sama_1676	0.69	+1.7
2,050,680	-		Sama_1676	0.69	+0.9
2,050,680	-		Sama_1676	0.69	-0.6
2,050,689	+		Sama_1676	0.71	-2.1
2,050,717	-		Sama_1676	0.76	-0.1
2,050,774	+		Sama_1676	0.86	-1.8
2,050,776	+		Sama_1676	0.86	-0.8
2,050,776	+		Sama_1676	0.86	+1.8
2,050,777	-		Sama_1676	0.87	+0.7
2,050,778	+		Sama_1676	0.87	+1.7
2,050,778	+		Sama_1676	0.87	+0.3
2,050,819	+				+3.9
2,050,821	+				-2.3
2,050,822	-				-0.6
2,050,837	+				-0.2
2,051,005	-				+0.3
2,051,005	-				+0.6
2,051,017	-				+0.2
2,051,017	-				-1.0
2,051,017	-				+2.4
2,051,022	+				-0.9
2,051,057	-				+2.6
2,051,085	+		Sama_1677	0.11	-0.8
2,051,106	-		Sama_1677	0.14	-0.8
2,051,106	-		Sama_1677	0.14	-0.6
2,051,110	+		Sama_1677	0.15	-1.1
2,051,110	+		Sama_1677	0.15	+1.7
2,051,111	-		Sama_1677	0.15	-3.0
2,051,111	-		Sama_1677	0.15	+0.8
2,051,111	-		Sama_1677	0.15	+0.1
2,051,111	-		Sama_1677	0.15	-0.6
2,051,111	-		Sama_1677	0.15	+0.8
2,051,111	-		Sama_1677	0.15	+0.7
2,051,115	-		Sama_1677	0.16	+0.2
2,051,115	-		Sama_1677	0.16	-1.1
2,051,127	+		Sama_1677	0.17	-0.0
2,051,127	+		Sama_1677	0.17	-0.0
2,051,127	+		Sama_1677	0.17	+1.6
2,051,127	+		Sama_1677	0.17	-0.4
2,051,127	+		Sama_1677	0.17	-1.1
2,051,127	+		Sama_1677	0.17	-0.4
2,051,128	-		Sama_1677	0.17	-0.8
2,051,128	-		Sama_1677	0.17	-0.6
2,051,128	-		Sama_1677	0.17	-1.8
2,051,128	-		Sama_1677	0.17	+2.6
2,051,128	-		Sama_1677	0.17	+0.6
2,051,128	-		Sama_1677	0.17	+1.2
2,051,128	-		Sama_1677	0.17	-1.6
2,051,220	+		Sama_1677	0.30	+2.8
2,051,221	-		Sama_1677	0.30	+2.4
2,051,221	-		Sama_1677	0.30	-0.0
2,051,233	-		Sama_1677	0.32	-2.5
2,051,233	-		Sama_1677	0.32	-1.6
2,051,233	-		Sama_1677	0.32	-2.4
2,051,237	+		Sama_1677	0.33	-0.8
2,051,238	-		Sama_1677	0.33	-0.3
2,051,238	-		Sama_1677	0.33	+0.5
2,051,286	+		Sama_1677	0.39	-0.0
2,051,286	+		Sama_1677	0.39	+0.6
2,051,287	-		Sama_1677	0.40	-0.5
2,051,287	-		Sama_1677	0.40	-0.6
2,051,311	-		Sama_1677	0.43	+3.1
2,051,311	-		Sama_1677	0.43	-0.3
2,051,311	-		Sama_1677	0.43	-0.4
2,051,333	-		Sama_1677	0.46	-2.4
2,051,333	-		Sama_1677	0.46	-0.5
2,051,346	+		Sama_1677	0.48	-0.6
2,051,347	-		Sama_1677	0.48	-1.7
2,051,353	+		Sama_1677	0.49	+2.3
2,051,353	+		Sama_1677	0.49	-1.4
2,051,353	+		Sama_1677	0.49	-2.0
2,051,354	-		Sama_1677	0.49	-0.7
2,051,354	-		Sama_1677	0.49	-4.3
2,051,354	-		Sama_1677	0.49	-2.3
2,051,354	-		Sama_1677	0.49	-1.3
2,051,419	+		Sama_1677	0.58	-0.6
2,051,436	+		Sama_1677	0.60	-0.3
2,051,437	-		Sama_1677	0.61	-1.4
2,051,513	+		Sama_1677	0.71	-1.4
2,051,514	-		Sama_1677	0.71	-1.6
2,051,556	+		Sama_1677	0.77	-0.2
2,051,557	-		Sama_1677	0.77	+3.4
2,051,569	+		Sama_1677	0.79	+1.8
2,051,701	+				+2.7
2,051,719	+				+0.6
2,051,719	+				-0.2
2,051,719	+				-0.5
2,051,720	-				-0.8
2,051,730	+				+0.9
2,051,731	-				+5.2
2,051,786	+				-1.1
2,051,786	+				-0.6
2,051,786	+				-1.0
2,051,786	+				-0.8
2,051,786	+				-0.3
2,051,787	-				-1.8
2,051,787	-				-1.4
2,051,787	-				+1.2
2,051,793	-				+1.2
2,051,871	-				+0.9
2,051,871	-				-1.4
2,051,892	+				+0.4
2,051,893	-				-0.8
2,051,893	-				-1.4
2,051,900	+		Sama_1678	0.10	-1.8
2,051,901	-		Sama_1678	0.10	-1.8
2,051,901	-		Sama_1678	0.10	-0.6
2,051,901	-		Sama_1678	0.10	+0.2
2,051,958	+		Sama_1678	0.13	-2.4
2,051,958	+		Sama_1678	0.13	-0.4
2,052,039	+		Sama_1678	0.18	-0.2
2,052,040	-		Sama_1678	0.18	-3.2
2,052,040	-		Sama_1678	0.18	-3.1
2,052,072	+		Sama_1678	0.20	+2.4
2,052,072	+		Sama_1678	0.20	+3.5
2,052,072	+		Sama_1678	0.20	+1.7
2,052,072	+		Sama_1678	0.20	-0.1
2,052,073	-		Sama_1678	0.20	+2.2
2,052,073	-		Sama_1678	0.20	-2.4
2,052,119	-		Sama_1678	0.23	-1.5
2,052,314	-		Sama_1678	0.34	+1.2
2,052,315	+		Sama_1678	0.34	-2.0
2,052,315	+		Sama_1678	0.34	+1.2
2,052,315	+		Sama_1678	0.34	-0.7
2,052,316	-		Sama_1678	0.34	-2.0
2,052,339	+		Sama_1678	0.36	-2.5
2,052,339	+		Sama_1678	0.36	-0.4
2,052,404	-		Sama_1678	0.40	+0.8
2,052,404	-		Sama_1678	0.40	+0.4
2,052,405	+		Sama_1678	0.40	-2.8
2,052,405	+		Sama_1678	0.40	-0.5
2,052,406	-		Sama_1678	0.40	-0.1
2,052,409	+		Sama_1678	0.40	-0.6
2,052,419	-		Sama_1678	0.40	+0.1
2,052,456	+		Sama_1678	0.43	-2.5
2,052,457	-		Sama_1678	0.43	+2.2
2,052,530	+		Sama_1678	0.47	-0.3
2,052,531	-		Sama_1678	0.47	-1.9
2,052,552	+		Sama_1678	0.48	+2.8
2,052,553	-		Sama_1678	0.48	+0.2
2,052,566	+		Sama_1678	0.49	+2.1
2,052,683	-		Sama_1678	0.56	+1.4
2,052,696	+		Sama_1678	0.57	+0.2
2,052,696	+		Sama_1678	0.57	+0.9
2,052,696	+		Sama_1678	0.57	-2.6
2,052,696	+		Sama_1678	0.57	-1.4
2,052,697	-		Sama_1678	0.57	-0.6
2,052,697	-		Sama_1678	0.57	-0.0
2,052,697	-		Sama_1678	0.57	-1.8
2,052,697	-		Sama_1678	0.57	-0.1
2,052,697	-		Sama_1678	0.57	-2.5
2,052,697	-		Sama_1678	0.57	+2.2