Strain Fitness in Shewanella amazonensis SB2B around Sama_1541

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
1,876,499	+				-1.1
1,876,509	-				-1.0
1,876,514	+				-0.6
1,876,515	-				-0.3
1,876,515	-				-1.1
1,876,548	+				+0.5
1,876,562	+				+1.0
1,876,568	-				-1.4
1,876,573	+				-0.4
1,876,574	-				-0.1
1,876,594	+				-0.9
1,876,612	+				+1.1
1,876,635	+				+3.2
1,876,794	+		Sama_1540	0.24	-0.1
1,876,817	+		Sama_1540	0.27	-1.0
1,876,817	+		Sama_1540	0.27	+0.4
1,876,846	+		Sama_1540	0.32	-0.4
1,876,855	-		Sama_1540	0.33	-2.5
1,876,858	+		Sama_1540	0.33	+0.1
1,876,858	+		Sama_1540	0.33	+0.2
1,876,939	+		Sama_1540	0.45	+1.2
1,876,939	+		Sama_1540	0.45	-2.4
1,876,939	+		Sama_1540	0.45	+0.9
1,876,981	+		Sama_1540	0.51	-1.9
1,876,982	-		Sama_1540	0.51	+0.5
1,877,079	+		Sama_1540	0.65	+0.9
1,877,079	+		Sama_1540	0.65	+0.6
1,877,080	-		Sama_1540	0.65	+0.7
1,877,107	+		Sama_1540	0.69	+0.2
1,877,107	+		Sama_1540	0.69	-0.0
1,877,107	+		Sama_1540	0.69	-1.5
1,877,107	+		Sama_1540	0.69	-0.4
1,877,107	+		Sama_1540	0.69	-0.0
1,877,107	+		Sama_1540	0.69	+1.0
1,877,108	-		Sama_1540	0.69	-1.4
1,877,257	-				+1.2
1,877,260	+				+1.1
1,877,261	-				-0.3
1,877,261	-				-0.8
1,877,261	-				-0.9
1,877,261	-				-1.4
1,877,262	+				-0.1
1,877,280	+				-0.1
1,877,280	+				-2.1
1,877,280	+				-0.8
1,877,281	-				-0.1
1,877,281	-				-1.8
1,877,281	-				+2.5
1,877,305	+				+2.3
1,877,305	+				-2.1
1,877,306	-				+0.4
1,877,357	+				+1.8
1,877,358	-				+2.6
1,877,416	+				+2.0
1,877,416	+				+2.5
1,877,416	+				+3.9
1,877,417	-				+1.2
1,877,417	-				+2.3
1,877,439	+				+1.9
1,877,440	-				+3.7
1,877,469	-				+2.0
1,877,485	-		Sama_1541	0.10	+3.0
1,877,593	-		Sama_1541	0.18	+3.4
1,877,593	-		Sama_1541	0.18	+3.4
1,877,795	+		Sama_1541	0.33	-1.1
1,877,972	-		Sama_1541	0.46	+3.8
1,878,024	+		Sama_1541	0.50	+0.8
1,878,187	+		Sama_1541	0.62	+4.0
1,878,188	-		Sama_1541	0.62	+0.8
1,878,206	+		Sama_1541	0.64	+3.9
1,878,207	-		Sama_1541	0.64	+3.2
1,878,211	+		Sama_1541	0.64	+5.4
1,878,256	+		Sama_1541	0.67	+3.2
1,878,257	-		Sama_1541	0.67	+2.9
1,878,257	-		Sama_1541	0.67	+4.0
1,878,257	-		Sama_1541	0.67	+2.8
1,878,289	+		Sama_1541	0.70	+4.4
1,878,289	+		Sama_1541	0.70	+2.3
1,878,289	+		Sama_1541	0.70	+1.9
1,878,289	+		Sama_1541	0.70	+1.5
1,878,290	-		Sama_1541	0.70	+2.7
1,878,290	-		Sama_1541	0.70	+1.5
1,878,290	-		Sama_1541	0.70	+3.9
1,878,290	-		Sama_1541	0.70	+1.5
1,878,290	-		Sama_1541	0.70	+3.4
1,878,290	-		Sama_1541	0.70	+4.4
1,878,290	-		Sama_1541	0.70	+1.7
1,878,290	-		Sama_1541	0.70	+1.7
1,878,295	+		Sama_1541	0.70	+2.9
1,878,295	+		Sama_1541	0.70	+4.7
1,878,295	+		Sama_1541	0.70	+1.5
1,878,295	+		Sama_1541	0.70	+2.4
1,878,295	+		Sama_1541	0.70	+4.0
1,878,295	+		Sama_1541	0.70	+3.7
1,878,296	-		Sama_1541	0.70	+0.6
1,878,296	-		Sama_1541	0.70	+3.7
1,878,296	-		Sama_1541	0.70	+4.0
1,878,296	-		Sama_1541	0.70	+3.5
1,878,296	-		Sama_1541	0.70	+2.4
1,878,296	-		Sama_1541	0.70	+4.3
1,878,296	-		Sama_1541	0.70	+2.8
1,878,296	-		Sama_1541	0.70	+1.9
1,878,299	-		Sama_1541	0.70	+4.6
1,878,315	+		Sama_1541	0.72	+3.5
1,878,325	+		Sama_1541	0.72	+3.7
1,878,326	-		Sama_1541	0.72	+3.6
1,878,326	-		Sama_1541	0.72	+2.7
1,878,326	-		Sama_1541	0.72	-1.1
1,878,326	-		Sama_1541	0.72	+2.8
1,878,326	-		Sama_1541	0.72	+2.2
1,878,348	+		Sama_1541	0.74	+3.4
1,878,349	-		Sama_1541	0.74	+4.6
1,878,349	-		Sama_1541	0.74	+2.8
1,878,349	-		Sama_1541	0.74	+1.8
1,878,371	+		Sama_1541	0.76	+3.2
1,878,444	+		Sama_1541	0.81	+1.4
1,878,444	+		Sama_1541	0.81	+3.0
1,878,444	+		Sama_1541	0.81	+3.8
1,878,444	+		Sama_1541	0.81	+2.9
1,878,445	-		Sama_1541	0.81	-0.5
1,878,445	-		Sama_1541	0.81	+2.6
1,878,449	-		Sama_1541	0.82	+1.2
1,878,566	+				+3.7
1,878,567	-				+1.5
1,878,567	-				+2.8
1,878,567	-				+2.2
1,878,568	+				+4.2
1,878,569	-				+2.9
1,878,569	-				+1.0
1,878,626	+				+4.3
1,878,627	-				+2.6
1,878,627	-				+2.9
1,878,629	+				+1.1
1,878,629	+				+2.4
1,878,629	+				+2.9
1,878,630	-				+2.6
1,878,630	-				+3.3
1,878,650	-				+3.6
1,878,686	+				+1.5
1,878,686	+				+2.9
1,878,703	+				+4.7
1,878,721	+				+4.8
1,878,829	+		Sama_1542	0.19	+4.9
1,878,830	-		Sama_1542	0.20	+5.0
1,878,838	-		Sama_1542	0.21	+5.0
1,878,910	-		Sama_1542	0.31	+4.2
1,879,081	-		Sama_1542	0.57	+3.6
1,879,081	-		Sama_1542	0.57	-0.1
1,879,144	+		Sama_1542	0.66	+4.4
1,879,145	-		Sama_1542	0.66	-1.8
1,879,186	+		Sama_1542	0.72	+4.3
1,879,186	+		Sama_1542	0.72	+2.3
1,879,187	-		Sama_1542	0.72	+3.6
1,879,187	-		Sama_1542	0.72	+4.9
1,879,193	+		Sama_1542	0.73	+5.1
1,879,193	+		Sama_1542	0.73	+3.6
1,879,193	+		Sama_1542	0.73	+5.8
1,879,194	-		Sama_1542	0.73	+4.3
1,879,261	-		Sama_1542	0.83	+2.6
1,879,341	-				+3.9
1,879,341	-				+4.7
1,879,341	-				+4.2
1,879,376	+				+4.2
1,879,377	-				+2.5
1,879,425	-				-0.6
1,879,433	+				+2.5
1,879,443	+				+3.2
1,879,443	+				+1.6
1,879,444	-				+1.0
1,879,453	-				+1.3
1,879,506	+				+0.5
1,879,506	+				-1.3
1,879,507	-				-1.3
1,879,507	-				-0.5
1,879,511	+				+0.4
1,879,512	-				-0.5
1,879,546	+				+0.7
1,879,546	+				-0.1
1,879,546	+				-0.1
1,879,565	+				-0.0
1,879,565	+				-0.1
1,879,569	+				-3.3
1,879,587	+				+0.4
1,879,587	+				-0.4
1,879,588	-				-0.3
1,879,619	-				+0.6
1,879,619	-				+1.3
1,879,624	+				+0.8
1,879,625	-				+0.5
1,879,685	+		Sama_1543	0.16	-0.4