Strain Fitness in Shewanella amazonensis SB2B around Sama_1096

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
1,320,840	+		Sama_1094	0.78	-2.1
1,320,840	+		Sama_1094	0.78	-0.0
1,320,841	-		Sama_1094	0.78	-0.5
1,320,885	+		Sama_1094	0.84	+0.6
1,321,001	+				-2.3
1,321,001	+				-0.7
1,321,002	-				-1.8
1,321,002	-				+2.2
1,321,002	-				-1.4
1,321,034	+				-0.8
1,321,034	+				-0.6
1,321,035	-				-1.8
1,321,035	-				+0.5
1,321,038	+				-0.3
1,321,039	-				-1.1
1,321,089	-		Sama_1095	0.15	+1.6
1,321,089	-		Sama_1095	0.15	-0.8
1,321,112	+		Sama_1095	0.19	+0.6
1,321,112	+		Sama_1095	0.19	-1.1
1,321,112	+		Sama_1095	0.19	-1.2
1,321,112	+		Sama_1095	0.19	-0.4
1,321,112	+		Sama_1095	0.19	+1.7
1,321,113	-		Sama_1095	0.19	-1.7
1,321,113	-		Sama_1095	0.19	+1.9
1,321,113	-		Sama_1095	0.19	-0.2
1,321,113	-		Sama_1095	0.19	+0.9
1,321,117	+		Sama_1095	0.20	-0.8
1,321,117	+		Sama_1095	0.20	+0.3
1,321,118	-		Sama_1095	0.20	+0.3
1,321,118	-		Sama_1095	0.20	+0.7
1,321,142	-		Sama_1095	0.25	-0.3
1,321,227	-		Sama_1095	0.41	-0.1
1,321,240	+		Sama_1095	0.43	+0.7
1,321,241	-		Sama_1095	0.44	+0.8
1,321,242	+		Sama_1095	0.44	-1.5
1,321,243	-		Sama_1095	0.44	-2.1
1,321,243	-		Sama_1095	0.44	+0.1
1,321,260	+		Sama_1095	0.47	+0.5
1,321,260	+		Sama_1095	0.47	+1.1
1,321,261	-		Sama_1095	0.47	+0.3
1,321,261	-		Sama_1095	0.47	-1.1
1,321,261	-		Sama_1095	0.47	-0.3
1,321,330	+		Sama_1095	0.60	+2.2
1,321,342	-		Sama_1095	0.63	+0.7
1,321,394	+		Sama_1095	0.73	+0.1
1,321,394	+		Sama_1095	0.73	+1.0
1,321,395	-		Sama_1095	0.73	-0.7
1,321,395	-		Sama_1095	0.73	-0.6
1,321,395	-		Sama_1095	0.73	-0.1
1,321,428	+		Sama_1095	0.79	+0.2
1,321,445	+		Sama_1095	0.82	+0.1
1,321,476	-		Sama_1095	0.88	-1.3
1,321,504	-				+1.1
1,321,504	-				-0.3
1,321,525	+				-0.0
1,321,525	+				-1.2
1,321,541	+				+1.2
1,321,541	+				+0.3
1,321,542	-				-0.8
1,321,552	+				-3.0
1,321,563	+				+2.0
1,321,564	-				-1.1
1,321,564	-				-0.5
1,321,579	+				-2.0
1,321,580	-				+1.6
1,321,637	+				-0.8
1,321,637	+				+0.2
1,321,663	-				-2.0
1,321,715	+				-2.1
1,321,716	-				-0.0
1,321,735	+				+0.2
1,321,735	+				-0.2
1,321,736	-				-1.1
1,321,736	-				-3.0
1,321,736	-				-1.2
1,321,741	-				+0.9
1,321,745	-				-0.7
1,321,770	+				-2.3
1,321,798	+				-1.3
1,321,798	+				-1.0
1,321,798	+				+0.7
1,321,900	+		Sama_1096	0.19	-0.8
1,321,900	+		Sama_1096	0.19	-1.3
1,321,900	+		Sama_1096	0.19	-1.8
1,321,901	-		Sama_1096	0.19	-0.3
1,321,935	-		Sama_1096	0.25	-0.2
1,321,976	+		Sama_1096	0.31	-1.1
1,321,976	+		Sama_1096	0.31	-0.6
1,321,976	+		Sama_1096	0.31	+0.7
1,321,976	+		Sama_1096	0.31	+1.7
1,321,976	+		Sama_1096	0.31	+0.6
1,321,977	-		Sama_1096	0.32	-1.7
1,321,977	-		Sama_1096	0.32	-1.7
1,321,977	-		Sama_1096	0.32	+0.4
1,321,977	-		Sama_1096	0.32	+0.3
1,321,977	-		Sama_1096	0.32	-0.2
1,322,006	-		Sama_1096	0.36	-1.1
1,322,016	+		Sama_1096	0.38	-0.0
1,322,017	-		Sama_1096	0.38	-0.2
1,322,044	+		Sama_1096	0.43	-0.8
1,322,044	+		Sama_1096	0.43	-0.2
1,322,044	+		Sama_1096	0.43	-1.5
1,322,044	+		Sama_1096	0.43	-1.0
1,322,044	+		Sama_1096	0.43	-0.7
1,322,045	-		Sama_1096	0.43	-2.6
1,322,045	-		Sama_1096	0.43	-0.5
1,322,047	+		Sama_1096	0.43	-1.3
1,322,151	+		Sama_1096	0.60	-0.1
1,322,161	+		Sama_1096	0.62	-1.0
1,322,161	+		Sama_1096	0.62	-0.6
1,322,336	-				-1.0
1,322,359	+				+1.1
1,322,360	-				-0.2
1,322,397	+				-1.8
1,322,398	-				+1.5
1,322,398	-				-3.2
1,322,398	-				-0.9
1,322,403	-				-0.1
1,322,443	+		Sama_1097	0.15	+0.1
1,322,443	+		Sama_1097	0.15	+0.6
1,322,444	-		Sama_1097	0.15	+0.3
1,322,543	+		Sama_1097	0.47	-1.8
1,322,544	-		Sama_1097	0.47	-0.3
1,322,544	-		Sama_1097	0.47	+0.6
1,322,584	+		Sama_1097	0.60	+0.9
1,322,584	+		Sama_1097	0.60	+1.6
1,322,584	+		Sama_1097	0.60	-2.1
1,322,585	-		Sama_1097	0.61	-1.5
1,322,620	+		Sama_1097	0.72	-0.8
1,322,620	+		Sama_1097	0.72	+0.2
1,322,620	+		Sama_1097	0.72	+0.3
1,322,641	+		Sama_1097	0.79	+0.9
1,322,641	+		Sama_1097	0.79	+0.3
1,322,643	+		Sama_1097	0.79	-2.4
1,322,643	+		Sama_1097	0.79	-1.0
1,322,643	+		Sama_1097	0.79	-0.5
1,322,643	+		Sama_1097	0.79	-1.3
1,322,643	+		Sama_1097	0.79	-1.2
1,322,643	+		Sama_1097	0.79	+1.1
1,322,643	+		Sama_1097	0.79	-0.4
1,322,644	-		Sama_1097	0.79	+0.5
1,322,644	-		Sama_1097	0.79	+1.7
1,322,644	-		Sama_1097	0.79	-1.1
1,322,688	-				-1.5
1,322,730	+				+0.1
1,322,730	+				-0.7
1,322,730	+				-1.8
1,322,768	-				-0.3
1,322,813	+				-1.4
1,322,817	+				+1.6
1,322,818	-				-1.0
1,322,905	-		Sama_1098	0.16	+0.4
1,322,952	+		Sama_1098	0.23	-0.7
1,322,952	+		Sama_1098	0.23	-1.0
1,322,952	+		Sama_1098	0.23	+1.9
1,322,952	+		Sama_1098	0.23	-1.0
1,322,990	-		Sama_1098	0.28	-1.0
1,323,009	+		Sama_1098	0.31	+0.5
1,323,009	+		Sama_1098	0.31	-3.1
1,323,009	+		Sama_1098	0.31	-0.9
1,323,009	+		Sama_1098	0.31	-0.1
1,323,009	+		Sama_1098	0.31	-0.4
1,323,010	-		Sama_1098	0.31	-1.2
1,323,010	-		Sama_1098	0.31	+0.5
1,323,010	-		Sama_1098	0.31	-2.3
1,323,010	-		Sama_1098	0.31	+0.5
1,323,010	-		Sama_1098	0.31	-0.9
1,323,015	+		Sama_1098	0.32	-0.5
1,323,015	+		Sama_1098	0.32	+0.0
1,323,015	+		Sama_1098	0.32	-0.4
1,323,015	+		Sama_1098	0.32	-0.1
1,323,016	-		Sama_1098	0.32	-0.2
1,323,016	-		Sama_1098	0.32	-1.1
1,323,043	+		Sama_1098	0.36	+1.8
1,323,043	+		Sama_1098	0.36	+0.4
1,323,044	-		Sama_1098	0.36	-0.1
1,323,086	-		Sama_1098	0.42	+0.9
1,323,121	+		Sama_1098	0.47	-2.2
1,323,121	+		Sama_1098	0.47	-0.4
1,323,122	-		Sama_1098	0.47	-0.4
1,323,185	+		Sama_1098	0.56	+0.9
1,323,186	-		Sama_1098	0.56	-2.9
1,323,215	+		Sama_1098	0.60	-2.9
1,323,215	+		Sama_1098	0.60	+1.8
1,323,215	+		Sama_1098	0.60	+2.2
1,323,215	+		Sama_1098	0.60	-0.5
1,323,215	+		Sama_1098	0.60	-1.1
1,323,215	+		Sama_1098	0.60	+1.8
1,323,216	-		Sama_1098	0.60	-1.5
1,323,216	-		Sama_1098	0.60	+0.0
1,323,216	-		Sama_1098	0.60	-1.1
1,323,216	-		Sama_1098	0.60	+0.9
1,323,216	-		Sama_1098	0.60	-0.8
1,323,217	+		Sama_1098	0.60	-1.7
1,323,218	-		Sama_1098	0.60	+0.8
1,323,218	-		Sama_1098	0.60	+2.3
1,323,246	+		Sama_1098	0.64	-1.9
1,323,271	+		Sama_1098	0.68	+1.7
1,323,271	+		Sama_1098	0.68	-2.7
1,323,271	+		Sama_1098	0.68	-0.1
1,323,350	+		Sama_1098	0.79	+0.5
1,323,350	+		Sama_1098	0.79	-0.4
1,323,351	-		Sama_1098	0.79	+0.3
1,323,370	+		Sama_1098	0.82	-0.9
1,323,370	+		Sama_1098	0.82	-1.0
1,323,370	+		Sama_1098	0.82	-0.3
1,323,371	-		Sama_1098	0.82	-1.3