Strain Fitness in Shewanella amazonensis SB2B around Sama_1095

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
1,320,039	+		Sama_1093	0.77	-4.0
1,320,039	+		Sama_1093	0.77	-0.3
1,320,039	+		Sama_1093	0.77	+1.1
1,320,039	+		Sama_1093	0.77	-0.8
1,320,040	-		Sama_1093	0.77	+0.2
1,320,040	-		Sama_1093	0.77	-1.8
1,320,099	-		Sama_1093	0.87	-1.1
1,320,180	+				-1.8
1,320,180	+				-0.8
1,320,181	-				-0.7
1,320,181	-				+1.1
1,320,181	-				+0.2
1,320,182	+				+0.4
1,320,183	-				-1.7
1,320,183	-				-0.2
1,320,224	+				+0.6
1,320,230	-				-0.5
1,320,230	-				+2.2
1,320,251	+				-1.0
1,320,303	+				-0.1
1,320,303	+				-0.5
1,320,303	+				-0.8
1,320,303	+				+2.9
1,320,303	+				+1.4
1,320,303	+				-0.1
1,320,303	+				+1.0
1,320,304	-				-0.1
1,320,304	-				+0.0
1,320,304	-				+1.4
1,320,343	+		Sama_1094	0.10	+0.3
1,320,344	-		Sama_1094	0.10	-2.5
1,320,362	+		Sama_1094	0.13	-0.7
1,320,394	+		Sama_1094	0.17	-0.2
1,320,394	+		Sama_1094	0.17	-2.5
1,320,394	+		Sama_1094	0.17	-1.9
1,320,395	-		Sama_1094	0.17	+0.7
1,320,395	-		Sama_1094	0.17	+0.2
1,320,430	-		Sama_1094	0.22	-0.3
1,320,552	+		Sama_1094	0.39	-1.5
1,320,552	+		Sama_1094	0.39	-0.1
1,320,552	+		Sama_1094	0.39	-0.8
1,320,553	-		Sama_1094	0.39	-1.2
1,320,623	+		Sama_1094	0.48	-1.6
1,320,628	+		Sama_1094	0.49	-0.6
1,320,628	+		Sama_1094	0.49	+0.5
1,320,629	-		Sama_1094	0.49	-0.2
1,320,629	-		Sama_1094	0.49	+1.8
1,320,654	+		Sama_1094	0.52	+1.6
1,320,655	-		Sama_1094	0.53	-0.8
1,320,662	-		Sama_1094	0.53	-1.3
1,320,671	+		Sama_1094	0.55	-0.1
1,320,671	+		Sama_1094	0.55	-1.1
1,320,672	-		Sama_1094	0.55	-1.3
1,320,672	-		Sama_1094	0.55	+0.3
1,320,672	-		Sama_1094	0.55	+0.2
1,320,681	-		Sama_1094	0.56	+0.7
1,320,774	+		Sama_1094	0.69	-0.6
1,320,775	-		Sama_1094	0.69	-0.5
1,320,840	+		Sama_1094	0.78	-2.1
1,320,840	+		Sama_1094	0.78	-0.0
1,320,841	-		Sama_1094	0.78	-0.5
1,320,885	+		Sama_1094	0.84	+0.6
1,321,001	+				-2.3
1,321,001	+				-0.7
1,321,002	-				-1.8
1,321,002	-				+2.2
1,321,002	-				-1.4
1,321,034	+				-0.8
1,321,034	+				-0.6
1,321,035	-				-1.8
1,321,035	-				+0.5
1,321,038	+				-0.3
1,321,039	-				-1.1
1,321,089	-		Sama_1095	0.15	+1.6
1,321,089	-		Sama_1095	0.15	-0.8
1,321,112	+		Sama_1095	0.19	+0.6
1,321,112	+		Sama_1095	0.19	-1.1
1,321,112	+		Sama_1095	0.19	-1.2
1,321,112	+		Sama_1095	0.19	-0.4
1,321,112	+		Sama_1095	0.19	+1.7
1,321,113	-		Sama_1095	0.19	-1.7
1,321,113	-		Sama_1095	0.19	+1.9
1,321,113	-		Sama_1095	0.19	-0.2
1,321,113	-		Sama_1095	0.19	+0.9
1,321,117	+		Sama_1095	0.20	-0.8
1,321,117	+		Sama_1095	0.20	+0.3
1,321,118	-		Sama_1095	0.20	+0.3
1,321,118	-		Sama_1095	0.20	+0.7
1,321,142	-		Sama_1095	0.25	-0.3
1,321,227	-		Sama_1095	0.41	-0.1
1,321,240	+		Sama_1095	0.43	+0.7
1,321,241	-		Sama_1095	0.44	+0.8
1,321,242	+		Sama_1095	0.44	-1.5
1,321,243	-		Sama_1095	0.44	-2.1
1,321,243	-		Sama_1095	0.44	+0.1
1,321,260	+		Sama_1095	0.47	+0.5
1,321,260	+		Sama_1095	0.47	+1.1
1,321,261	-		Sama_1095	0.47	+0.3
1,321,261	-		Sama_1095	0.47	-1.1
1,321,261	-		Sama_1095	0.47	-0.3
1,321,330	+		Sama_1095	0.60	+2.2
1,321,342	-		Sama_1095	0.63	+0.7
1,321,394	+		Sama_1095	0.73	+0.1
1,321,394	+		Sama_1095	0.73	+1.0
1,321,395	-		Sama_1095	0.73	-0.7
1,321,395	-		Sama_1095	0.73	-0.6
1,321,395	-		Sama_1095	0.73	-0.1
1,321,428	+		Sama_1095	0.79	+0.2
1,321,445	+		Sama_1095	0.82	+0.1
1,321,476	-		Sama_1095	0.88	-1.3
1,321,504	-				+1.1
1,321,504	-				-0.3
1,321,525	+				-0.0
1,321,525	+				-1.2
1,321,541	+				+1.2
1,321,541	+				+0.3
1,321,542	-				-0.8
1,321,552	+				-3.0
1,321,563	+				+2.0
1,321,564	-				-1.1
1,321,564	-				-0.5
1,321,579	+				-2.0
1,321,580	-				+1.6
1,321,637	+				-0.8
1,321,637	+				+0.2
1,321,663	-				-2.0
1,321,715	+				-2.1
1,321,716	-				-0.0
1,321,735	+				+0.2
1,321,735	+				-0.2
1,321,736	-				-1.1
1,321,736	-				-3.0
1,321,736	-				-1.2
1,321,741	-				+0.9
1,321,745	-				-0.7
1,321,770	+				-2.3
1,321,798	+				-1.3
1,321,798	+				-1.0
1,321,798	+				+0.7
1,321,900	+		Sama_1096	0.19	-0.8
1,321,900	+		Sama_1096	0.19	-1.3
1,321,900	+		Sama_1096	0.19	-1.8
1,321,901	-		Sama_1096	0.19	-0.3
1,321,935	-		Sama_1096	0.25	-0.2
1,321,976	+		Sama_1096	0.31	-1.1
1,321,976	+		Sama_1096	0.31	-0.6
1,321,976	+		Sama_1096	0.31	+0.7
1,321,976	+		Sama_1096	0.31	+1.7
1,321,976	+		Sama_1096	0.31	+0.6
1,321,977	-		Sama_1096	0.32	-1.7
1,321,977	-		Sama_1096	0.32	-1.7
1,321,977	-		Sama_1096	0.32	+0.4
1,321,977	-		Sama_1096	0.32	+0.3
1,321,977	-		Sama_1096	0.32	-0.2
1,322,006	-		Sama_1096	0.36	-1.1
1,322,016	+		Sama_1096	0.38	-0.0
1,322,017	-		Sama_1096	0.38	-0.2
1,322,044	+		Sama_1096	0.43	-0.8
1,322,044	+		Sama_1096	0.43	-0.2
1,322,044	+		Sama_1096	0.43	-1.5
1,322,044	+		Sama_1096	0.43	-1.0
1,322,044	+		Sama_1096	0.43	-0.7
1,322,045	-		Sama_1096	0.43	-2.6
1,322,045	-		Sama_1096	0.43	-0.5
1,322,047	+		Sama_1096	0.43	-1.3
1,322,151	+		Sama_1096	0.60	-0.1
1,322,161	+		Sama_1096	0.62	-1.0
1,322,161	+		Sama_1096	0.62	-0.6
1,322,336	-				-1.0
1,322,359	+				+1.1
1,322,360	-				-0.2
1,322,397	+				-1.8
1,322,398	-				+1.5
1,322,398	-				-3.2
1,322,398	-				-0.9
1,322,403	-				-0.1
1,322,443	+		Sama_1097	0.15	+0.1
1,322,443	+		Sama_1097	0.15	+0.6
1,322,444	-		Sama_1097	0.15	+0.3