Strain Fitness in Shewanella amazonensis SB2B around Sama_1052

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
1,272,378	+				+0.4
1,272,381	+				+0.1
1,272,383	+				+0.9
1,272,383	+				-1.3
1,272,383	+				+1.3
1,272,383	+				+0.2
1,272,390	+				-1.1
1,272,390	+				-1.5
1,272,499	+				+3.3
1,272,499	+				+0.8
1,272,514	+				-1.4
1,272,556	+				+1.5
1,272,557	-				+0.5
1,272,565	-				+0.1
1,272,565	-				-0.5
1,272,566	+				-0.2
1,272,629	+				-0.8
1,272,699	-				-1.1
1,272,854	-				+0.1
1,272,921	+				-2.3
1,272,922	-				+0.7
1,273,008	+		Sama_1051	0.38	-1.3
1,273,028	-		Sama_1051	0.46	-1.5
1,273,074	+		Sama_1051	0.64	-2.6
1,273,083	+		Sama_1051	0.67	+0.5
1,273,084	-		Sama_1051	0.67	-2.8
1,273,134	-		Sama_1051	0.87	-2.2
1,273,141	+		Sama_1051	0.90	+0.2
1,273,142	-				-0.9
1,273,222	+				-1.0
1,273,222	+				+0.5
1,273,222	+				+0.0
1,273,222	+				-1.3
1,273,222	+				+0.0
1,273,223	-				-2.0
1,273,234	+				-1.8
1,273,235	-				-0.8
1,273,238	+				-1.3
1,273,284	+				-2.7
1,273,443	+		Sama_1052	0.15	-0.2
1,273,443	+		Sama_1052	0.15	-1.0
1,273,443	+		Sama_1052	0.15	-1.7
1,273,599	+		Sama_1052	0.24	-1.6
1,273,619	+		Sama_1052	0.25	-2.5
1,273,619	+		Sama_1052	0.25	-1.8
1,273,619	+		Sama_1052	0.25	+1.1
1,273,620	-		Sama_1052	0.25	-2.9
1,273,620	-		Sama_1052	0.25	-2.1
1,273,636	+		Sama_1052	0.26	-2.1
1,273,636	+		Sama_1052	0.26	-2.3
1,273,636	+		Sama_1052	0.26	-0.5
1,273,636	+		Sama_1052	0.26	-1.6
1,273,637	-		Sama_1052	0.26	-0.1
1,273,637	-		Sama_1052	0.26	-1.5
1,273,637	-		Sama_1052	0.26	+0.1
1,273,637	-		Sama_1052	0.26	-0.6
1,273,637	-		Sama_1052	0.26	-1.3
1,273,640	+		Sama_1052	0.26	-3.1
1,273,640	+		Sama_1052	0.26	-1.8
1,273,640	+		Sama_1052	0.26	-1.3
1,273,640	+		Sama_1052	0.26	-2.4
1,273,641	-		Sama_1052	0.27	-2.9
1,273,641	-		Sama_1052	0.27	-2.0
1,273,682	+		Sama_1052	0.29	-0.5
1,273,682	+		Sama_1052	0.29	-0.9
1,273,683	-		Sama_1052	0.29	-1.1
1,273,713	-		Sama_1052	0.30	-1.8
1,273,742	+		Sama_1052	0.32	+0.0
1,273,743	-		Sama_1052	0.32	-1.5
1,273,799	+		Sama_1052	0.35	-1.5
1,273,875	+		Sama_1052	0.40	+1.5
1,273,876	-		Sama_1052	0.40	-2.5
1,273,876	-		Sama_1052	0.40	-0.2
1,273,876	-		Sama_1052	0.40	-0.5
1,273,912	+		Sama_1052	0.42	-0.9
1,273,912	+		Sama_1052	0.42	-0.5
1,273,912	+		Sama_1052	0.42	-1.8
1,273,912	+		Sama_1052	0.42	-1.0
1,273,913	-		Sama_1052	0.42	-2.4
1,273,913	-		Sama_1052	0.42	-3.1
1,273,913	-		Sama_1052	0.42	-1.3
1,273,913	-		Sama_1052	0.42	+0.9
1,273,913	-		Sama_1052	0.42	-0.4
1,273,995	+		Sama_1052	0.46	-2.6
1,274,042	-		Sama_1052	0.49	-0.6
1,274,076	-		Sama_1052	0.51	-2.0
1,274,076	-		Sama_1052	0.51	-2.4
1,274,090	+		Sama_1052	0.51	-1.1
1,274,177	+		Sama_1052	0.56	-1.4
1,274,238	+		Sama_1052	0.60	-2.0
1,274,283	+		Sama_1052	0.62	-1.5
1,274,284	-		Sama_1052	0.62	-0.5
1,274,329	+		Sama_1052	0.65	-1.5
1,274,333	+		Sama_1052	0.65	+0.2
1,274,334	-		Sama_1052	0.65	-0.6
1,274,334	-		Sama_1052	0.65	-0.9
1,274,334	-		Sama_1052	0.65	+0.4
1,274,351	+		Sama_1052	0.66	-0.6
1,274,351	+		Sama_1052	0.66	-2.7
1,274,434	+		Sama_1052	0.71	-2.0
1,274,435	-		Sama_1052	0.71	-2.6
1,274,468	+		Sama_1052	0.72	+0.2
1,274,468	+		Sama_1052	0.72	+0.1
1,274,468	+		Sama_1052	0.72	-0.8
1,274,468	+		Sama_1052	0.72	-0.1
1,274,468	+		Sama_1052	0.72	-0.9
1,274,469	-		Sama_1052	0.72	-0.1
1,274,469	-		Sama_1052	0.72	+0.5
1,274,469	-		Sama_1052	0.72	-0.2
1,274,469	-		Sama_1052	0.72	-1.8
1,274,469	-		Sama_1052	0.72	-1.3
1,274,469	-		Sama_1052	0.72	-1.3
1,274,469	-		Sama_1052	0.72	-0.8
1,274,469	-		Sama_1052	0.72	-1.5
1,274,473	-		Sama_1052	0.73	+0.5
1,274,473	-		Sama_1052	0.73	-2.0
1,274,604	+		Sama_1052	0.80	-2.5
1,274,604	+		Sama_1052	0.80	-0.7
1,274,617	+		Sama_1052	0.81	-2.0
1,274,617	+		Sama_1052	0.81	-4.1
1,274,617	+		Sama_1052	0.81	-1.8
1,274,618	-		Sama_1052	0.81	-2.1
1,274,618	-		Sama_1052	0.81	-2.0
1,274,618	-		Sama_1052	0.81	-0.8
1,274,631	+		Sama_1052	0.81	-0.6
1,274,631	+		Sama_1052	0.81	-1.3
1,274,632	-		Sama_1052	0.82	-2.1
1,274,638	+		Sama_1052	0.82	-0.4
1,274,687	-		Sama_1052	0.85	-1.8
1,274,737	+		Sama_1052	0.87	-1.8
1,274,783	+		Sama_1052	0.90	-2.5
1,274,784	-				-1.6
1,274,894	+				-0.5
1,274,905	+				-1.9
1,274,906	-				-0.5
1,274,962	-				-1.8
1,274,962	-				-1.0
1,275,034	+				-2.0
1,275,034	+				-0.7
1,275,034	+				-0.8
1,275,034	+				-1.8
1,275,035	-				+1.5
1,275,064	+				-2.1
1,275,064	+				-1.3
1,275,064	+				-3.7
1,275,064	+				-1.5
1,275,064	+				-1.5
1,275,064	+				-1.1
1,275,065	-				-1.1
1,275,066	+				-1.7
1,275,067	-				-3.2
1,275,067	-				+1.5
1,275,067	-				-0.8
1,275,067	-				-0.8
1,275,112	+		Sama_1053	0.12	-3.2
1,275,172	+		Sama_1053	0.18	+0.5
1,275,172	+		Sama_1053	0.18	-0.7
1,275,172	+		Sama_1053	0.18	-0.8
1,275,173	-		Sama_1053	0.18	+0.1
1,275,173	-		Sama_1053	0.18	-1.6
1,275,173	-		Sama_1053	0.18	-1.3
1,275,173	-		Sama_1053	0.18	-1.5
1,275,173	-		Sama_1053	0.18	-1.6
1,275,177	+		Sama_1053	0.18	-0.7
1,275,177	+		Sama_1053	0.18	-1.8
1,275,177	+		Sama_1053	0.18	-3.4
1,275,177	+		Sama_1053	0.18	+0.9
1,275,177	+		Sama_1053	0.18	-0.5
1,275,178	-		Sama_1053	0.18	-2.7
1,275,178	-		Sama_1053	0.18	-0.5
1,275,178	-		Sama_1053	0.18	-2.0
1,275,178	-		Sama_1053	0.18	-2.1
1,275,178	-		Sama_1053	0.18	+0.3
1,275,180	+		Sama_1053	0.18	-1.9
1,275,180	+		Sama_1053	0.18	-1.1
1,275,180	+		Sama_1053	0.18	-1.3
1,275,180	+		Sama_1053	0.18	-0.5
1,275,180	+		Sama_1053	0.18	+0.5
1,275,181	-		Sama_1053	0.18	-0.7
1,275,181	-		Sama_1053	0.18	-0.2
1,275,186	+		Sama_1053	0.19	-0.3
1,275,187	-		Sama_1053	0.19	+1.3
1,275,239	-		Sama_1053	0.24	-2.6
1,275,401	+		Sama_1053	0.38	-2.0
1,275,428	+		Sama_1053	0.40	-2.5
1,275,428	+		Sama_1053	0.40	-2.3
1,275,441	-		Sama_1053	0.41	-0.6
1,275,487	-		Sama_1053	0.45	-0.5
1,275,487	-		Sama_1053	0.45	+1.5
1,275,487	-		Sama_1053	0.45	-0.1
1,275,492	+		Sama_1053	0.46	-2.3
1,275,493	-		Sama_1053	0.46	-0.2
1,275,493	-		Sama_1053	0.46	-0.7
1,275,493	-		Sama_1053	0.46	-0.5
1,275,506	-		Sama_1053	0.47	-0.5
1,275,616	+		Sama_1053	0.57	-1.4
1,275,622	+		Sama_1053	0.57	-2.3
1,275,623	-		Sama_1053	0.57	-1.3
1,275,623	-		Sama_1053	0.57	+0.2
1,275,671	+		Sama_1053	0.62	-1.3
1,275,671	+		Sama_1053	0.62	-0.1
1,275,671	+		Sama_1053	0.62	-0.1
1,275,671	+		Sama_1053	0.62	-3.0
1,275,672	-		Sama_1053	0.62	-1.5
1,275,672	-		Sama_1053	0.62	-1.7
1,275,672	-		Sama_1053	0.62	-1.0
1,275,672	-		Sama_1053	0.62	-2.2
1,275,672	-		Sama_1053	0.62	-1.8
1,275,672	-		Sama_1053	0.62	-1.3
1,275,672	-		Sama_1053	0.62	-2.1
1,275,726	-		Sama_1053	0.67	-2.3
1,275,746	+		Sama_1053	0.68	-0.8
1,275,746	+		Sama_1053	0.68	-1.5
1,275,747	-		Sama_1053	0.68	-1.6
1,275,752	+		Sama_1053	0.69	-0.5
1,275,752	+		Sama_1053	0.69	-1.7
1,275,752	+		Sama_1053	0.69	+0.5
1,275,752	+		Sama_1053	0.69	+0.0
1,275,753	-		Sama_1053	0.69	-0.1
1,275,754	+		Sama_1053	0.69	-3.0
1,275,754	+		Sama_1053	0.69	-2.4
1,275,754	+		Sama_1053	0.69	-2.6
1,275,754	+		Sama_1053	0.69	-1.1
1,275,754	+		Sama_1053	0.69	-1.1
1,275,754	+		Sama_1053	0.69	+0.5
1,275,754	+		Sama_1053	0.69	-0.7
1,275,755	-		Sama_1053	0.69	-4.1
1,275,755	-		Sama_1053	0.69	+0.1
1,275,755	-		Sama_1053	0.69	-2.5
1,275,755	-		Sama_1053	0.69	-1.9