Strain Fitness in Shewanella amazonensis SB2B around Sama_1044

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
1,260,719	+		Sama_1043	0.16	-0.5
1,260,719	+		Sama_1043	0.16	+0.0
1,260,721	+		Sama_1043	0.16	+0.5
1,260,722	-		Sama_1043	0.16	+0.2
1,260,841	-		Sama_1043	0.30	-1.8
1,260,886	+		Sama_1043	0.35	+0.9
1,260,887	-		Sama_1043	0.35	-2.4
1,260,887	-		Sama_1043	0.35	-2.9
1,260,887	-		Sama_1043	0.35	-2.7
1,260,887	-		Sama_1043	0.35	+1.5
1,260,985	-		Sama_1043	0.46	-1.4
1,261,098	+		Sama_1043	0.58	+0.1
1,261,098	+		Sama_1043	0.58	-1.8
1,261,099	-		Sama_1043	0.58	-1.3
1,261,131	+		Sama_1043	0.62	-2.5
1,261,132	-		Sama_1043	0.62	+3.2
1,261,132	-		Sama_1043	0.62	+0.4
1,261,132	-		Sama_1043	0.62	-2.1
1,261,132	-		Sama_1043	0.62	-1.5
1,261,166	-		Sama_1043	0.66	-0.7
1,261,166	-		Sama_1043	0.66	-1.7
1,261,232	+		Sama_1043	0.73	-0.1
1,261,304	+		Sama_1043	0.81	-0.1
1,261,304	+		Sama_1043	0.81	+0.4
1,261,305	-		Sama_1043	0.82	-1.7
1,261,305	-		Sama_1043	0.82	-0.3
1,261,381	+				+0.8
1,261,431	+				-1.7
1,261,432	-				+0.0
1,261,438	+				+0.8
1,261,447	+				+0.3
1,261,447	+				-0.1
1,261,448	-				+1.9
1,261,451	+				-0.5
1,261,513	+				+0.9
1,261,548	+				-0.6
1,261,549	-				+2.1
1,261,551	+				-1.9
1,261,570	-				+0.1
1,261,724	-		Sama_1044	0.17	+0.2
1,261,724	-		Sama_1044	0.17	-1.3
1,261,774	+		Sama_1044	0.23	+0.5
1,261,816	-		Sama_1044	0.27	-0.7
1,261,826	+		Sama_1044	0.28	+0.4
1,261,826	+		Sama_1044	0.28	+0.1
1,261,826	+		Sama_1044	0.28	-0.1
1,261,826	+		Sama_1044	0.28	-0.7
1,261,826	+		Sama_1044	0.28	-1.5
1,261,899	+		Sama_1044	0.35	+0.3
1,261,975	+		Sama_1044	0.43	+0.3
1,261,975	+		Sama_1044	0.43	+0.5
1,261,975	+		Sama_1044	0.43	-0.6
1,261,975	+		Sama_1044	0.43	-0.8
1,261,976	-		Sama_1044	0.43	+0.5
1,262,074	+		Sama_1044	0.53	-0.7
1,262,075	-		Sama_1044	0.53	+1.6
1,262,104	-		Sama_1044	0.56	-1.5
1,262,175	+		Sama_1044	0.63	-1.4
1,262,175	+		Sama_1044	0.63	+0.8
1,262,176	-		Sama_1044	0.63	-0.1
1,262,236	-		Sama_1044	0.70	+1.1
1,262,252	+		Sama_1044	0.71	-1.1
1,262,252	+		Sama_1044	0.71	-0.3
1,262,252	+		Sama_1044	0.71	-1.0
1,262,252	+		Sama_1044	0.71	-0.1
1,262,253	-		Sama_1044	0.71	-0.1
1,262,253	-		Sama_1044	0.71	-2.1
1,262,253	-		Sama_1044	0.71	+1.3
1,262,255	+		Sama_1044	0.71	-1.5
1,262,256	-		Sama_1044	0.72	-0.5
1,262,284	+		Sama_1044	0.74	-0.5
1,262,284	+		Sama_1044	0.74	+0.3
1,262,284	+		Sama_1044	0.74	+1.3
1,262,284	+		Sama_1044	0.74	-0.2
1,262,284	+		Sama_1044	0.74	+0.9
1,262,284	+		Sama_1044	0.74	-0.6
1,262,285	-		Sama_1044	0.74	+0.2
1,262,285	-		Sama_1044	0.74	+0.6
1,262,285	-		Sama_1044	0.74	+1.0
1,262,285	-		Sama_1044	0.74	-1.3
1,262,285	-		Sama_1044	0.74	-1.5
1,262,286	+		Sama_1044	0.75	-0.1
1,262,286	+		Sama_1044	0.75	+0.7
1,262,286	+		Sama_1044	0.75	+2.3
1,262,286	+		Sama_1044	0.75	+0.9
1,262,286	+		Sama_1044	0.75	-2.5
1,262,286	+		Sama_1044	0.75	-1.4
1,262,286	+		Sama_1044	0.75	+0.7
1,262,286	+		Sama_1044	0.75	-0.5
1,262,286	+		Sama_1044	0.75	-0.2
1,262,286	+		Sama_1044	0.75	+0.7
1,262,287	-		Sama_1044	0.75	+0.2
1,262,287	-		Sama_1044	0.75	-0.5
1,262,287	-		Sama_1044	0.75	+0.8
1,262,287	-		Sama_1044	0.75	+0.5
1,262,287	-		Sama_1044	0.75	-2.7
1,262,287	-		Sama_1044	0.75	-1.7
1,262,291	+		Sama_1044	0.75	+0.0
1,262,291	+		Sama_1044	0.75	+1.0
1,262,291	+		Sama_1044	0.75	-0.1
1,262,291	+		Sama_1044	0.75	-1.1
1,262,292	-		Sama_1044	0.75	+0.3
1,262,292	-		Sama_1044	0.75	-1.5
1,262,292	-		Sama_1044	0.75	+1.5
1,262,292	-		Sama_1044	0.75	+0.1
1,262,306	+		Sama_1044	0.77	-1.8
1,262,306	+		Sama_1044	0.77	-1.5
1,262,306	+		Sama_1044	0.77	+0.2
1,262,307	-		Sama_1044	0.77	+1.4
1,262,307	-		Sama_1044	0.77	-0.8
1,262,307	-		Sama_1044	0.77	-2.0
1,262,307	-		Sama_1044	0.77	+0.9
1,262,307	-		Sama_1044	0.77	-0.2
1,262,307	-		Sama_1044	0.77	-2.1
1,262,310	+		Sama_1044	0.77	-1.1
1,262,310	+		Sama_1044	0.77	-2.0
1,262,310	+		Sama_1044	0.77	-1.1
1,262,311	-		Sama_1044	0.77	+1.6
1,262,343	+		Sama_1044	0.80	+0.2
1,262,343	+		Sama_1044	0.80	-2.7
1,262,389	+		Sama_1044	0.85	-1.1
1,262,390	-		Sama_1044	0.85	-1.0
1,262,447	+				-0.1
1,262,456	+				-1.3
1,262,456	+				-0.8
1,262,456	+				-1.3
1,262,462	+				+1.9
1,262,462	+				-0.1
1,262,462	+				-0.6
1,262,463	-				+0.5
1,262,533	+				-1.1
1,262,533	+				-1.7
1,262,533	+				-1.4
1,262,542	-				-0.8
1,262,584	+				+0.6
1,262,584	+				+0.8
1,262,585	-				+0.6
1,262,585	-				+0.2
1,262,617	+				+0.8
1,262,617	+				+2.2
1,262,618	-				-1.5
1,262,652	+				-0.1
1,262,653	-				-1.4
1,262,653	-				-0.1
1,262,657	+				+0.5
1,262,657	+				+2.5
1,262,658	-				-0.5
1,262,702	+				-2.1
1,262,703	-				-0.8
1,262,703	-				-1.1
1,262,703	-				-1.3
1,262,703	-				+1.7
1,262,717	+				-0.8
1,262,717	+				+2.9
1,262,717	+				+0.3
1,262,717	+				-0.2
1,262,718	-				-1.7
1,262,718	-				-0.1
1,262,718	-				-0.3
1,262,733	-				+1.2
1,262,761	+				+0.1
1,262,762	-				+0.4
1,262,762	-				-1.4
1,262,791	+				+3.5
1,262,892	+				-1.8
1,262,892	+				-0.7
1,262,893	-				-1.1
1,262,893	-				+0.5
1,262,918	+		Sama_1045	0.10	+0.2
1,262,919	-		Sama_1045	0.10	-1.8
1,262,930	-		Sama_1045	0.11	-0.6
1,262,930	-		Sama_1045	0.11	+0.8
1,262,930	-		Sama_1045	0.11	+0.1
1,262,930	-		Sama_1045	0.11	-0.8
1,262,938	+		Sama_1045	0.11	-1.2
1,262,939	-		Sama_1045	0.11	-2.2
1,263,018	+		Sama_1045	0.14	-1.3
1,263,032	+		Sama_1045	0.15	-2.0
1,263,032	+		Sama_1045	0.15	-0.3
1,263,032	+		Sama_1045	0.15	-1.3
1,263,033	-		Sama_1045	0.15	+1.3
1,263,033	-		Sama_1045	0.15	+1.4
1,263,063	+		Sama_1045	0.16	+1.5
1,263,063	+		Sama_1045	0.16	-2.3
1,263,063	+		Sama_1045	0.16	-0.4
1,263,064	-		Sama_1045	0.16	-1.2
1,263,064	-		Sama_1045	0.16	+0.3
1,263,091	+		Sama_1045	0.17	+0.2
1,263,091	+		Sama_1045	0.17	+0.8
1,263,092	-		Sama_1045	0.17	-1.7
1,263,092	-		Sama_1045	0.17	-1.9
1,263,092	-		Sama_1045	0.17	+1.6
1,263,092	-		Sama_1045	0.17	-1.8
1,263,092	-		Sama_1045	0.17	+0.5
1,263,099	+		Sama_1045	0.17	-1.3
1,263,099	+		Sama_1045	0.17	+1.4
1,263,099	+		Sama_1045	0.17	+3.2
1,263,099	+		Sama_1045	0.17	+3.5
1,263,099	+		Sama_1045	0.17	-0.1
1,263,099	+		Sama_1045	0.17	+0.0
1,263,099	+		Sama_1045	0.17	+0.2
1,263,099	+		Sama_1045	0.17	-2.0
1,263,099	+		Sama_1045	0.17	-0.8
1,263,099	+		Sama_1045	0.17	-1.3
1,263,099	+		Sama_1045	0.17	+0.5
1,263,099	+		Sama_1045	0.17	-1.3
1,263,099	+		Sama_1045	0.17	+0.5
1,263,100	-		Sama_1045	0.18	-1.3
1,263,100	-		Sama_1045	0.18	+0.8
1,263,100	-		Sama_1045	0.18	-1.3
1,263,100	-		Sama_1045	0.18	+0.0
1,263,100	-		Sama_1045	0.18	+0.1
1,263,100	-		Sama_1045	0.18	-1.0
1,263,100	-		Sama_1045	0.18	-1.8
1,263,100	-		Sama_1045	0.18	+3.6
1,263,109	+		Sama_1045	0.18	+0.8
1,263,193	+		Sama_1045	0.21	+0.5
1,263,193	+		Sama_1045	0.21	+0.6
1,263,241	+		Sama_1045	0.23	-0.5
1,263,245	+		Sama_1045	0.23	-0.8
1,263,246	-		Sama_1045	0.23	-0.2
1,263,246	-		Sama_1045	0.23	+0.0
1,263,298	+		Sama_1045	0.25	-0.8
1,263,313	+		Sama_1045	0.26	+0.5
1,263,334	+		Sama_1045	0.27	-0.0
1,263,334	+		Sama_1045	0.27	-0.1
1,263,334	+		Sama_1045	0.27	-1.5
1,263,334	+		Sama_1045	0.27	-0.7
1,263,334	+		Sama_1045	0.27	-2.1
1,263,334	+		Sama_1045	0.27	+1.6
1,263,334	+		Sama_1045	0.27	+0.7
1,263,334	+		Sama_1045	0.27	-1.5
1,263,334	+		Sama_1045	0.27	+1.1
1,263,335	-		Sama_1045	0.27	+0.3
1,263,335	-		Sama_1045	0.27	-1.1
1,263,335	-		Sama_1045	0.27	-0.4
1,263,335	-		Sama_1045	0.27	+1.1
1,263,335	-		Sama_1045	0.27	-0.5
1,263,335	-		Sama_1045	0.27	-1.1
1,263,336	+		Sama_1045	0.27	+1.9
1,263,336	+		Sama_1045	0.27	-0.8
1,263,336	+		Sama_1045	0.27	-0.3
1,263,336	+		Sama_1045	0.27	-1.1
1,263,336	+		Sama_1045	0.27	-0.7
1,263,336	+		Sama_1045	0.27	-2.4
1,263,336	+		Sama_1045	0.27	+1.1
1,263,336	+		Sama_1045	0.27	-0.1
1,263,337	-		Sama_1045	0.27	-2.1
1,263,337	-		Sama_1045	0.27	+0.1
1,263,337	-		Sama_1045	0.27	+1.2
1,263,337	-		Sama_1045	0.27	+0.9
1,263,337	-		Sama_1045	0.27	-1.5
1,263,337	-		Sama_1045	0.27	+1.0
1,263,337	-		Sama_1045	0.27	-0.5
1,263,337	-		Sama_1045	0.27	+3.1
1,263,346	+		Sama_1045	0.27	-0.5
1,263,347	-		Sama_1045	0.27	+0.9
1,263,395	+		Sama_1045	0.29	+0.3
1,263,395	+		Sama_1045	0.29	-0.5
1,263,410	-		Sama_1045	0.30	+1.3
1,263,504	+		Sama_1045	0.33	+4.9
1,263,504	+		Sama_1045	0.33	+0.8
1,263,504	+		Sama_1045	0.33	+1.2
1,263,504	+		Sama_1045	0.33	-1.5
1,263,505	-		Sama_1045	0.33	+0.5
1,263,505	-		Sama_1045	0.33	-1.9