Experiment: Anaero. fumarate (e.a.)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0703 and Sama_0704 overlap by 4 nucleotides Sama_0704 and Sama_0705 overlap by 4 nucleotides Sama_0705 and Sama_0706 are separated by 22 nucleotides Sama_0706 and Sama_0707 are separated by 44 nucleotides
Sama_0703: Sama_0703 - hypothetical protein (RefSeq), at 866,231 to 867,118
_0703
Sama_0704: Sama_0704 - hypothetical protein (RefSeq), at 867,115 to 867,789
_0704
Sama_0705: Sama_0705 - hypothetical protein (RefSeq), at 867,786 to 867,980
_0705
Sama_0706: Sama_0706 - Flp pilus assembly protein CpaB-like protein (RefSeq), at 868,003 to 868,899
_0706
Sama_0707: Sama_0707 - putative type II and III secretion system outermembrane protein, secretin (RefSeq), at 868,944 to 870,215
_0707
Position (kb) 868
869 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 867.071 kb on - strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.131 kb on + strand at 867.137 kb on + strand at 867.137 kb on + strand at 867.138 kb on - strand at 867.215 kb on + strand, within Sama_0704 at 867.225 kb on + strand, within Sama_0704 at 867.226 kb on - strand, within Sama_0704 at 867.399 kb on + strand, within Sama_0704 at 867.422 kb on - strand, within Sama_0704 at 867.422 kb on - strand, within Sama_0704 at 867.439 kb on + strand, within Sama_0704 at 867.439 kb on + strand, within Sama_0704 at 867.439 kb on + strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.447 kb on + strand, within Sama_0704 at 867.447 kb on + strand, within Sama_0704 at 867.534 kb on + strand, within Sama_0704 at 867.556 kb on - strand, within Sama_0704 at 867.556 kb on - strand, within Sama_0704 at 867.597 kb on - strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.608 kb on - strand, within Sama_0704 at 867.608 kb on - strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.614 kb on - strand, within Sama_0704 at 867.614 kb on - strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.625 kb on + strand, within Sama_0704 at 867.625 kb on + strand, within Sama_0704 at 867.628 kb on + strand, within Sama_0704 at 867.628 kb on + strand, within Sama_0704 at 867.628 kb on + strand, within Sama_0704 at 867.629 kb on - strand, within Sama_0704 at 867.629 kb on - strand, within Sama_0704 at 867.662 kb on + strand, within Sama_0704 at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.730 kb on - strand at 867.730 kb on - strand at 867.758 kb on + strand at 867.758 kb on + strand at 867.758 kb on + strand at 867.759 kb on - strand at 867.825 kb on + strand, within Sama_0705 at 867.882 kb on - strand, within Sama_0705 at 867.899 kb on - strand, within Sama_0705 at 867.933 kb on + strand, within Sama_0705 at 867.978 kb on + strand at 867.987 kb on + strand at 867.987 kb on + strand at 867.988 kb on - strand at 867.988 kb on - strand at 868.019 kb on + strand at 868.020 kb on - strand at 868.026 kb on + strand at 868.027 kb on - strand at 868.090 kb on + strand at 868.091 kb on - strand at 868.143 kb on - strand, within Sama_0706 at 868.182 kb on + strand, within Sama_0706 at 868.209 kb on + strand, within Sama_0706 at 868.209 kb on + strand, within Sama_0706 at 868.209 kb on + strand, within Sama_0706 at 868.210 kb on - strand, within Sama_0706 at 868.210 kb on - strand, within Sama_0706 at 868.224 kb on + strand, within Sama_0706 at 868.326 kb on + strand, within Sama_0706 at 868.326 kb on + strand, within Sama_0706 at 868.326 kb on + strand, within Sama_0706 at 868.327 kb on - strand, within Sama_0706 at 868.336 kb on + strand, within Sama_0706 at 868.336 kb on + strand, within Sama_0706 at 868.336 kb on + strand, within Sama_0706 at 868.337 kb on - strand, within Sama_0706 at 868.340 kb on + strand, within Sama_0706 at 868.475 kb on - strand, within Sama_0706 at 868.475 kb on - strand, within Sama_0706 at 868.475 kb on - strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.568 kb on + strand, within Sama_0706 at 868.568 kb on + strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.595 kb on - strand, within Sama_0706 at 868.612 kb on + strand, within Sama_0706 at 868.612 kb on + strand, within Sama_0706 at 868.623 kb on + strand, within Sama_0706 at 868.737 kb on + strand, within Sama_0706 at 868.738 kb on - strand, within Sama_0706 at 868.761 kb on + strand, within Sama_0706 at 868.795 kb on + strand, within Sama_0706 at 868.795 kb on + strand, within Sama_0706 at 868.795 kb on + strand, within Sama_0706 at 868.795 kb on + strand, within Sama_0706 at 868.795 kb on + strand, within Sama_0706 at 868.796 kb on - strand, within Sama_0706 at 868.796 kb on - strand, within Sama_0706 at 868.796 kb on - strand, within Sama_0706 at 868.796 kb on - strand, within Sama_0706 at 868.796 kb on - strand, within Sama_0706 at 868.837 kb on + strand at 868.837 kb on + strand at 868.905 kb on - strand at 868.908 kb on - strand at 868.924 kb on + strand at 868.933 kb on + strand at 868.962 kb on + strand at 868.970 kb on + strand at 868.985 kb on + strand at 868.985 kb on + strand at 868.985 kb on + strand at 868.992 kb on + strand at 869.014 kb on - strand at 869.014 kb on - strand at 869.015 kb on + strand at 869.016 kb on - strand at 869.074 kb on + strand, within Sama_0707 at 869.074 kb on + strand, within Sama_0707 at 869.127 kb on - strand, within Sama_0707 at 869.127 kb on - strand, within Sama_0707 at 869.164 kb on + strand, within Sama_0707 at 869.164 kb on + strand, within Sama_0707 at 869.164 kb on + strand, within Sama_0707 at 869.269 kb on + strand, within Sama_0707 at 869.269 kb on + strand, within Sama_0707 at 869.269 kb on + strand, within Sama_0707 at 869.269 kb on + strand, within Sama_0707 at 869.269 kb on + strand, within Sama_0707 at 869.358 kb on + strand, within Sama_0707 at 869.358 kb on + strand, within Sama_0707 at 869.359 kb on - strand, within Sama_0707 at 869.359 kb on - strand, within Sama_0707 at 869.359 kb on - strand, within Sama_0707 at 869.359 kb on - strand, within Sama_0707 at 869.367 kb on + strand, within Sama_0707 at 869.368 kb on - strand, within Sama_0707 at 869.368 kb on - strand, within Sama_0707 at 869.372 kb on + strand, within Sama_0707 at 869.373 kb on - strand, within Sama_0707 at 869.501 kb on + strand, within Sama_0707 at 869.554 kb on + strand, within Sama_0707 at 869.555 kb on - strand, within Sama_0707 at 869.607 kb on + strand, within Sama_0707 at 869.608 kb on - strand, within Sama_0707 at 869.617 kb on + strand, within Sama_0707 at 869.617 kb on + strand, within Sama_0707 at 869.773 kb on + strand, within Sama_0707 at 869.773 kb on + strand, within Sama_0707 at 869.773 kb on + strand, within Sama_0707 at 869.773 kb on + strand, within Sama_0707 at 869.773 kb on + strand, within Sama_0707 at 869.773 kb on + strand, within Sama_0707 at 869.774 kb on - strand, within Sama_0707 at 869.774 kb on - strand, within Sama_0707 at 869.777 kb on + strand, within Sama_0707 at 869.777 kb on + strand, within Sama_0707 at 869.778 kb on - strand, within Sama_0707 at 869.778 kb on - strand, within Sama_0707 at 869.784 kb on + strand, within Sama_0707 at 869.785 kb on - strand, within Sama_0707 at 869.785 kb on - strand, within Sama_0707 at 869.785 kb on - strand, within Sama_0707 at 869.793 kb on + strand, within Sama_0707 at 869.800 kb on + strand, within Sama_0707 at 869.800 kb on + strand, within Sama_0707 at 869.801 kb on - strand, within Sama_0707 at 869.801 kb on - strand, within Sama_0707 at 869.812 kb on + strand, within Sama_0707 at 869.812 kb on + strand, within Sama_0707 at 869.812 kb on + strand, within Sama_0707 at 869.812 kb on + strand, within Sama_0707 at 869.813 kb on - strand, within Sama_0707 at 869.813 kb on - strand, within Sama_0707 at 869.813 kb on - strand, within Sama_0707 at 869.813 kb on - strand, within Sama_0707 at 869.813 kb on - strand, within Sama_0707 at 869.813 kb on - strand, within Sama_0707 at 869.840 kb on + strand, within Sama_0707 at 869.840 kb on + strand, within Sama_0707 at 869.841 kb on - strand, within Sama_0707
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate (e.a.) remove 867,071 - -0.3 867,079 + -0.0 867,079 + +1.8 867,079 + +1.6 867,079 + +0.6 867,079 + -1.3 867,079 + +0.2 867,079 + -0.1 867,079 + +3.4 867,080 - +0.3 867,080 - -0.7 867,080 - -0.6 867,080 - +1.6 867,080 - +1.4 867,080 - -0.4 867,083 + -2.2 867,083 + +2.5 867,083 + +0.5 867,083 + -1.2 867,083 + +0.0 867,083 + +0.7 867,083 + +0.5 867,131 + -1.2 867,137 + +0.5 867,137 + -0.1 867,138 - +0.3 867,215 + Sama_0704 0.15 +0.6 867,225 + Sama_0704 0.16 -0.4 867,226 - Sama_0704 0.16 +0.4 867,399 + Sama_0704 0.42 +0.9 867,422 - Sama_0704 0.45 +0.5 867,422 - Sama_0704 0.45 +0.4 867,439 + Sama_0704 0.48 +0.9 867,439 + Sama_0704 0.48 +1.1 867,439 + Sama_0704 0.48 +0.6 867,440 - Sama_0704 0.48 -0.2 867,440 - Sama_0704 0.48 +1.5 867,440 - Sama_0704 0.48 +0.1 867,440 - Sama_0704 0.48 -1.4 867,440 - Sama_0704 0.48 -0.7 867,447 + Sama_0704 0.49 -0.2 867,447 + Sama_0704 0.49 +0.6 867,534 + Sama_0704 0.62 -0.4 867,556 - Sama_0704 0.65 -1.6 867,556 - Sama_0704 0.65 -1.2 867,597 - Sama_0704 0.71 +0.0 867,607 + Sama_0704 0.73 +0.4 867,607 + Sama_0704 0.73 -1.2 867,607 + Sama_0704 0.73 +0.0 867,607 + Sama_0704 0.73 +0.5 867,608 - Sama_0704 0.73 -0.2 867,608 - Sama_0704 0.73 -2.6 867,613 + Sama_0704 0.74 -0.9 867,613 + Sama_0704 0.74 +1.5 867,613 + Sama_0704 0.74 -1.3 867,613 + Sama_0704 0.74 -2.0 867,614 - Sama_0704 0.74 -0.1 867,614 - Sama_0704 0.74 +0.4 867,616 + Sama_0704 0.74 -0.2 867,616 + Sama_0704 0.74 +0.6 867,616 + Sama_0704 0.74 -1.1 867,616 + Sama_0704 0.74 +2.0 867,616 + Sama_0704 0.74 -1.2 867,616 + Sama_0704 0.74 -1.1 867,625 + Sama_0704 0.76 -1.5 867,625 + Sama_0704 0.76 -0.7 867,628 + Sama_0704 0.76 -0.6 867,628 + Sama_0704 0.76 -0.2 867,628 + Sama_0704 0.76 -2.7 867,629 - Sama_0704 0.76 -0.0 867,629 - Sama_0704 0.76 +0.9 867,662 + Sama_0704 0.81 -1.5 867,725 + -1.0 867,725 + -2.2 867,725 + -1.1 867,725 + -2.4 867,725 + -0.3 867,725 + -2.3 867,725 + +1.9 867,725 + -1.0 867,725 + +0.5 867,726 - -0.1 867,726 - +0.8 867,726 - +0.4 867,726 - +0.8 867,726 - -2.0 867,726 - -0.7 867,726 - -0.6 867,726 - +1.7 867,726 - +0.5 867,726 - -2.6 867,726 - +0.8 867,729 + +0.1 867,729 + +0.3 867,729 + -1.5 867,729 + -2.3 867,729 + -1.8 867,729 + +2.5 867,730 - -0.0 867,730 - +0.7 867,758 + +1.6 867,758 + -0.8 867,758 + -0.0 867,759 - -0.2 867,825 + Sama_0705 0.20 +1.1 867,882 - Sama_0705 0.49 +0.6 867,899 - Sama_0705 0.58 -0.7 867,933 + Sama_0705 0.75 -0.5 867,978 + -2.4 867,987 + -1.7 867,987 + +0.8 867,988 - +2.1 867,988 - -0.1 868,019 + +0.1 868,020 - +0.3 868,026 + +0.2 868,027 - -1.6 868,090 + -2.3 868,091 - +0.4 868,143 - Sama_0706 0.16 +0.7 868,182 + Sama_0706 0.20 -0.6 868,209 + Sama_0706 0.23 +1.8 868,209 + Sama_0706 0.23 -0.7 868,209 + Sama_0706 0.23 -1.7 868,210 - Sama_0706 0.23 +1.0 868,210 - Sama_0706 0.23 -0.8 868,224 + Sama_0706 0.25 +0.2 868,326 + Sama_0706 0.36 -0.5 868,326 + Sama_0706 0.36 -0.0 868,326 + Sama_0706 0.36 -1.0 868,327 - Sama_0706 0.36 -1.7 868,336 + Sama_0706 0.37 -1.3 868,336 + Sama_0706 0.37 -1.1 868,336 + Sama_0706 0.37 -0.7 868,337 - Sama_0706 0.37 +0.8 868,340 + Sama_0706 0.38 +0.6 868,475 - Sama_0706 0.53 +0.9 868,475 - Sama_0706 0.53 -0.8 868,475 - Sama_0706 0.53 +1.1 868,562 + Sama_0706 0.62 -1.4 868,562 + Sama_0706 0.62 +0.0 868,562 + Sama_0706 0.62 +0.6 868,562 + Sama_0706 0.62 -1.7 868,562 + Sama_0706 0.62 -0.8 868,563 - Sama_0706 0.62 -1.0 868,563 - Sama_0706 0.62 +0.6 868,563 - Sama_0706 0.62 -1.7 868,563 - Sama_0706 0.62 +2.0 868,563 - Sama_0706 0.62 +0.4 868,563 - Sama_0706 0.62 -1.0 868,563 - Sama_0706 0.62 -0.4 868,563 - Sama_0706 0.62 -1.1 868,568 + Sama_0706 0.63 -1.1 868,568 + Sama_0706 0.63 +0.4 868,569 - Sama_0706 0.63 -2.6 868,569 - Sama_0706 0.63 -1.2 868,569 - Sama_0706 0.63 +0.1 868,569 - Sama_0706 0.63 +0.3 868,569 - Sama_0706 0.63 +1.4 868,569 - Sama_0706 0.63 +2.0 868,569 - Sama_0706 0.63 +2.3 868,594 + Sama_0706 0.66 -1.8 868,594 + Sama_0706 0.66 -1.5 868,594 + Sama_0706 0.66 -0.4 868,594 + Sama_0706 0.66 -1.4 868,595 - Sama_0706 0.66 +0.6 868,612 + Sama_0706 0.68 -1.0 868,612 + Sama_0706 0.68 +0.5 868,623 + Sama_0706 0.69 -1.0 868,737 + Sama_0706 0.82 -0.6 868,738 - Sama_0706 0.82 +0.6 868,761 + Sama_0706 0.85 +0.3 868,795 + Sama_0706 0.88 +1.4 868,795 + Sama_0706 0.88 -2.0 868,795 + Sama_0706 0.88 -1.2 868,795 + Sama_0706 0.88 -0.9 868,795 + Sama_0706 0.88 -0.4 868,796 - Sama_0706 0.88 -2.2 868,796 - Sama_0706 0.88 +1.2 868,796 - Sama_0706 0.88 -1.3 868,796 - Sama_0706 0.88 -0.3 868,796 - Sama_0706 0.88 -1.6 868,837 + -0.9 868,837 + -1.1 868,905 - +2.5 868,908 - -1.2 868,924 + +0.7 868,933 + +0.3 868,962 + -0.6 868,970 + +0.1 868,985 + +1.2 868,985 + -0.8 868,985 + +0.4 868,992 + -1.2 869,014 - +1.2 869,014 - -0.3 869,015 + -1.6 869,016 - +1.6 869,074 + Sama_0707 0.10 -0.2 869,074 + Sama_0707 0.10 -0.8 869,127 - Sama_0707 0.14 +0.1 869,127 - Sama_0707 0.14 -2.0 869,164 + Sama_0707 0.17 -1.1 869,164 + Sama_0707 0.17 +0.3 869,164 + Sama_0707 0.17 -0.2 869,269 + Sama_0707 0.26 -0.5 869,269 + Sama_0707 0.26 -2.0 869,269 + Sama_0707 0.26 +1.1 869,269 + Sama_0707 0.26 -0.9 869,269 + Sama_0707 0.26 -0.2 869,358 + Sama_0707 0.33 -0.2 869,358 + Sama_0707 0.33 +1.8 869,359 - Sama_0707 0.33 -0.4 869,359 - Sama_0707 0.33 -0.0 869,359 - Sama_0707 0.33 -0.3 869,359 - Sama_0707 0.33 -1.5 869,367 + Sama_0707 0.33 +0.5 869,368 - Sama_0707 0.33 -0.5 869,368 - Sama_0707 0.33 -1.8 869,372 + Sama_0707 0.34 +1.4 869,373 - Sama_0707 0.34 -0.6 869,501 + Sama_0707 0.44 -0.4 869,554 + Sama_0707 0.48 -0.8 869,555 - Sama_0707 0.48 +0.2 869,607 + Sama_0707 0.52 -0.1 869,608 - Sama_0707 0.52 +0.0 869,617 + Sama_0707 0.53 -0.5 869,617 + Sama_0707 0.53 +0.6 869,773 + Sama_0707 0.65 +0.1 869,773 + Sama_0707 0.65 +0.2 869,773 + Sama_0707 0.65 +0.0 869,773 + Sama_0707 0.65 +1.5 869,773 + Sama_0707 0.65 +0.8 869,773 + Sama_0707 0.65 -0.9 869,774 - Sama_0707 0.65 +1.4 869,774 - Sama_0707 0.65 -1.4 869,777 + Sama_0707 0.65 +0.3 869,777 + Sama_0707 0.65 -2.5 869,778 - Sama_0707 0.66 -1.4 869,778 - Sama_0707 0.66 +1.9 869,784 + Sama_0707 0.66 +0.6 869,785 - Sama_0707 0.66 -0.3 869,785 - Sama_0707 0.66 -1.2 869,785 - Sama_0707 0.66 +0.1 869,793 + Sama_0707 0.67 -2.1 869,800 + Sama_0707 0.67 -0.8 869,800 + Sama_0707 0.67 -0.6 869,801 - Sama_0707 0.67 +0.7 869,801 - Sama_0707 0.67 -0.7 869,812 + Sama_0707 0.68 +1.0 869,812 + Sama_0707 0.68 +2.3 869,812 + Sama_0707 0.68 +0.2 869,812 + Sama_0707 0.68 -0.2 869,813 - Sama_0707 0.68 -1.4 869,813 - Sama_0707 0.68 +0.6 869,813 - Sama_0707 0.68 -0.7 869,813 - Sama_0707 0.68 +0.6 869,813 - Sama_0707 0.68 -1.1 869,813 - Sama_0707 0.68 -3.9 869,840 + Sama_0707 0.70 +1.6 869,840 + Sama_0707 0.70 +0.7 869,841 - Sama_0707 0.71 -1.8
Or see this region's nucleotide sequence