Experiment: Anaero. fumarate (e.a.)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0527 and Sama_0528 are separated by 11 nucleotides Sama_0528 and Sama_0529 are separated by 174 nucleotides
Sama_0527: Sama_0527 - cytochrome c family protein (RefSeq), at 650,682 to 651,740
_0527
Sama_0528: Sama_0528 - cytochrome c family protein (RefSeq), at 651,752 to 652,366
_0528
Sama_0529: Sama_0529 - hypothetical protein (RefSeq), at 652,541 to 653,227
_0529
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 650.752 kb on + strand at 650.752 kb on + strand at 650.753 kb on - strand at 650.753 kb on - strand at 650.753 kb on - strand at 650.753 kb on - strand at 650.770 kb on + strand at 650.837 kb on + strand, within Sama_0527 at 650.837 kb on + strand, within Sama_0527 at 650.837 kb on + strand, within Sama_0527 at 650.989 kb on + strand, within Sama_0527 at 650.990 kb on - strand, within Sama_0527 at 650.990 kb on - strand, within Sama_0527 at 650.990 kb on - strand, within Sama_0527 at 651.052 kb on + strand, within Sama_0527 at 651.052 kb on + strand, within Sama_0527 at 651.052 kb on + strand, within Sama_0527 at 651.079 kb on + strand, within Sama_0527 at 651.079 kb on + strand, within Sama_0527 at 651.151 kb on - strand, within Sama_0527 at 651.202 kb on - strand, within Sama_0527 at 651.202 kb on - strand, within Sama_0527 at 651.202 kb on - strand, within Sama_0527 at 651.247 kb on + strand, within Sama_0527 at 651.247 kb on + strand, within Sama_0527 at 651.247 kb on + strand, within Sama_0527 at 651.248 kb on - strand, within Sama_0527 at 651.280 kb on + strand, within Sama_0527 at 651.281 kb on - strand, within Sama_0527 at 651.281 kb on - strand, within Sama_0527 at 651.281 kb on - strand, within Sama_0527 at 651.286 kb on + strand, within Sama_0527 at 651.286 kb on + strand, within Sama_0527 at 651.287 kb on - strand, within Sama_0527 at 651.287 kb on - strand, within Sama_0527 at 651.287 kb on - strand, within Sama_0527 at 651.287 kb on - strand, within Sama_0527 at 651.346 kb on + strand, within Sama_0527 at 651.347 kb on - strand, within Sama_0527 at 651.347 kb on - strand, within Sama_0527 at 651.347 kb on - strand, within Sama_0527 at 651.347 kb on - strand, within Sama_0527 at 651.347 kb on - strand, within Sama_0527 at 651.350 kb on + strand, within Sama_0527 at 651.350 kb on + strand, within Sama_0527 at 651.350 kb on + strand, within Sama_0527 at 651.351 kb on - strand, within Sama_0527 at 651.351 kb on - strand, within Sama_0527 at 651.351 kb on - strand, within Sama_0527 at 651.363 kb on + strand, within Sama_0527 at 651.363 kb on + strand, within Sama_0527 at 651.364 kb on - strand, within Sama_0527 at 651.364 kb on - strand, within Sama_0527 at 651.415 kb on + strand, within Sama_0527 at 651.415 kb on + strand, within Sama_0527 at 651.470 kb on + strand, within Sama_0527 at 651.470 kb on + strand, within Sama_0527 at 651.471 kb on - strand, within Sama_0527 at 651.480 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.505 kb on + strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.506 kb on - strand, within Sama_0527 at 651.509 kb on + strand, within Sama_0527 at 651.509 kb on + strand, within Sama_0527 at 651.527 kb on + strand, within Sama_0527 at 651.527 kb on + strand, within Sama_0527 at 651.538 kb on - strand, within Sama_0527 at 651.538 kb on - strand, within Sama_0527 at 651.555 kb on + strand, within Sama_0527 at 651.555 kb on + strand, within Sama_0527 at 651.556 kb on - strand, within Sama_0527 at 651.556 kb on - strand, within Sama_0527 at 651.572 kb on + strand, within Sama_0527 at 651.573 kb on - strand, within Sama_0527 at 651.610 kb on + strand, within Sama_0527 at 651.610 kb on + strand, within Sama_0527 at 651.610 kb on + strand, within Sama_0527 at 651.610 kb on + strand, within Sama_0527 at 651.610 kb on + strand, within Sama_0527 at 651.611 kb on - strand, within Sama_0527 at 651.642 kb on + strand at 651.643 kb on - strand at 651.643 kb on - strand at 651.643 kb on - strand at 651.753 kb on + strand at 651.753 kb on + strand at 651.754 kb on - strand at 651.771 kb on + strand at 651.771 kb on + strand at 651.771 kb on + strand at 651.771 kb on + strand at 651.772 kb on - strand at 651.772 kb on - strand at 651.772 kb on - strand at 651.779 kb on + strand at 651.779 kb on + strand at 651.779 kb on + strand at 651.808 kb on + strand at 651.872 kb on + strand, within Sama_0528 at 651.872 kb on + strand, within Sama_0528 at 651.872 kb on + strand, within Sama_0528 at 651.873 kb on - strand, within Sama_0528 at 651.888 kb on + strand, within Sama_0528 at 651.889 kb on - strand, within Sama_0528 at 651.889 kb on - strand, within Sama_0528 at 651.889 kb on - strand, within Sama_0528 at 651.889 kb on - strand, within Sama_0528 at 651.969 kb on - strand, within Sama_0528 at 651.993 kb on + strand, within Sama_0528 at 652.013 kb on - strand, within Sama_0528 at 652.080 kb on + strand, within Sama_0528 at 652.189 kb on + strand, within Sama_0528 at 652.190 kb on - strand, within Sama_0528 at 652.190 kb on - strand, within Sama_0528 at 652.191 kb on + strand, within Sama_0528 at 652.192 kb on - strand, within Sama_0528 at 652.192 kb on - strand, within Sama_0528 at 652.198 kb on + strand, within Sama_0528 at 652.198 kb on + strand, within Sama_0528 at 652.199 kb on - strand, within Sama_0528 at 652.233 kb on - strand, within Sama_0528 at 652.233 kb on - strand, within Sama_0528 at 652.352 kb on + strand at 652.353 kb on - strand at 652.353 kb on - strand at 652.386 kb on + strand at 652.386 kb on + strand at 652.386 kb on + strand at 652.387 kb on - strand at 652.392 kb on + strand at 652.393 kb on - strand at 652.393 kb on - strand at 652.393 kb on - strand at 652.393 kb on - strand at 652.401 kb on + strand at 652.401 kb on + strand at 652.401 kb on + strand at 652.506 kb on + strand at 652.546 kb on + strand at 652.546 kb on + strand at 652.546 kb on + strand at 652.546 kb on + strand at 652.546 kb on + strand at 652.547 kb on - strand at 652.547 kb on - strand at 652.547 kb on - strand at 652.547 kb on - strand at 652.564 kb on + strand at 652.564 kb on + strand at 652.564 kb on + strand at 652.565 kb on - strand at 652.590 kb on + strand at 652.590 kb on + strand at 652.590 kb on + strand at 652.591 kb on - strand at 652.591 kb on - strand at 652.591 kb on - strand at 652.600 kb on + strand at 652.601 kb on - strand at 652.601 kb on - strand at 652.601 kb on - strand at 652.617 kb on + strand, within Sama_0529 at 652.617 kb on + strand, within Sama_0529 at 652.617 kb on + strand, within Sama_0529 at 652.617 kb on + strand, within Sama_0529 at 652.618 kb on - strand, within Sama_0529 at 652.618 kb on - strand, within Sama_0529 at 652.651 kb on + strand, within Sama_0529 at 652.651 kb on + strand, within Sama_0529 at 652.651 kb on + strand, within Sama_0529 at 652.651 kb on + strand, within Sama_0529 at 652.652 kb on - strand, within Sama_0529 at 652.652 kb on - strand, within Sama_0529 at 652.655 kb on + strand, within Sama_0529 at 652.655 kb on + strand, within Sama_0529 at 652.655 kb on + strand, within Sama_0529 at 652.656 kb on - strand, within Sama_0529 at 652.656 kb on - strand, within Sama_0529 at 652.656 kb on - strand, within Sama_0529 at 652.657 kb on + strand, within Sama_0529 at 652.657 kb on + strand, within Sama_0529 at 652.657 kb on + strand, within Sama_0529 at 652.658 kb on - strand, within Sama_0529 at 652.658 kb on - strand, within Sama_0529 at 652.745 kb on - strand, within Sama_0529 at 652.762 kb on + strand, within Sama_0529 at 652.762 kb on + strand, within Sama_0529 at 652.763 kb on - strand, within Sama_0529 at 652.763 kb on - strand, within Sama_0529 at 653.100 kb on + strand, within Sama_0529 at 653.100 kb on + strand, within Sama_0529 at 653.100 kb on + strand, within Sama_0529 at 653.100 kb on + strand, within Sama_0529 at 653.100 kb on + strand, within Sama_0529 at 653.101 kb on - strand, within Sama_0529 at 653.101 kb on - strand, within Sama_0529 at 653.104 kb on + strand, within Sama_0529 at 653.104 kb on + strand, within Sama_0529 at 653.104 kb on + strand, within Sama_0529 at 653.105 kb on - strand, within Sama_0529 at 653.105 kb on - strand, within Sama_0529 at 653.105 kb on - strand, within Sama_0529 at 653.105 kb on - strand, within Sama_0529 at 653.105 kb on - strand, within Sama_0529 at 653.107 kb on + strand, within Sama_0529 at 653.107 kb on + strand, within Sama_0529 at 653.108 kb on - strand, within Sama_0529 at 653.108 kb on - strand, within Sama_0529 at 653.184 kb on + strand at 653.184 kb on + strand at 653.184 kb on + strand at 653.184 kb on + strand at 653.185 kb on - strand at 653.185 kb on - strand at 653.207 kb on + strand at 653.207 kb on + strand at 653.207 kb on + strand at 653.208 kb on - strand at 653.208 kb on - strand at 653.208 kb on - strand at 653.208 kb on - strand at 653.208 kb on - strand at 653.208 kb on - strand at 653.209 kb on + strand at 653.209 kb on + strand at 653.209 kb on + strand at 653.209 kb on + strand at 653.209 kb on + strand at 653.210 kb on - strand at 653.210 kb on - strand at 653.210 kb on - strand at 653.210 kb on - strand at 653.285 kb on + strand at 653.285 kb on + strand at 653.285 kb on + strand at 653.285 kb on + strand at 653.286 kb on - strand at 653.297 kb on + strand at 653.298 kb on - strand at 653.313 kb on + strand at 653.337 kb on + strand at 653.348 kb on - strand at 653.352 kb on + strand at 653.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate (e.a.) remove 650,752 + -1.9 650,752 + -1.8 650,753 - -0.8 650,753 - +1.0 650,753 - -2.7 650,753 - +0.3 650,770 + +1.9 650,837 + Sama_0527 0.15 -0.4 650,837 + Sama_0527 0.15 +0.9 650,837 + Sama_0527 0.15 -0.9 650,989 + Sama_0527 0.29 -0.6 650,990 - Sama_0527 0.29 +0.4 650,990 - Sama_0527 0.29 -0.5 650,990 - Sama_0527 0.29 -1.8 651,052 + Sama_0527 0.35 +0.3 651,052 + Sama_0527 0.35 -2.2 651,052 + Sama_0527 0.35 -0.0 651,079 + Sama_0527 0.37 -1.3 651,079 + Sama_0527 0.37 -1.5 651,151 - Sama_0527 0.44 +0.5 651,202 - Sama_0527 0.49 +1.3 651,202 - Sama_0527 0.49 +0.1 651,202 - Sama_0527 0.49 -2.0 651,247 + Sama_0527 0.53 -0.3 651,247 + Sama_0527 0.53 -2.2 651,247 + Sama_0527 0.53 -0.3 651,248 - Sama_0527 0.53 +0.9 651,280 + Sama_0527 0.56 +0.2 651,281 - Sama_0527 0.57 -2.7 651,281 - Sama_0527 0.57 -0.2 651,281 - Sama_0527 0.57 -2.0 651,286 + Sama_0527 0.57 +0.1 651,286 + Sama_0527 0.57 +0.8 651,287 - Sama_0527 0.57 +0.4 651,287 - Sama_0527 0.57 -1.0 651,287 - Sama_0527 0.57 +0.3 651,287 - Sama_0527 0.57 +0.7 651,346 + Sama_0527 0.63 -0.9 651,347 - Sama_0527 0.63 -0.9 651,347 - Sama_0527 0.63 -3.6 651,347 - Sama_0527 0.63 +2.3 651,347 - Sama_0527 0.63 -0.9 651,347 - Sama_0527 0.63 +0.1 651,350 + Sama_0527 0.63 +1.7 651,350 + Sama_0527 0.63 -1.2 651,350 + Sama_0527 0.63 +2.5 651,351 - Sama_0527 0.63 -0.2 651,351 - Sama_0527 0.63 -1.7 651,351 - Sama_0527 0.63 -0.9 651,363 + Sama_0527 0.64 +2.2 651,363 + Sama_0527 0.64 +0.3 651,364 - Sama_0527 0.64 -0.2 651,364 - Sama_0527 0.64 -0.9 651,415 + Sama_0527 0.69 +1.7 651,415 + Sama_0527 0.69 -0.6 651,470 + Sama_0527 0.74 +0.3 651,470 + Sama_0527 0.74 -0.7 651,471 - Sama_0527 0.75 -1.2 651,480 + Sama_0527 0.75 +1.1 651,505 + Sama_0527 0.78 -2.0 651,505 + Sama_0527 0.78 +0.3 651,505 + Sama_0527 0.78 +0.5 651,505 + Sama_0527 0.78 +1.3 651,505 + Sama_0527 0.78 -1.2 651,505 + Sama_0527 0.78 +0.5 651,505 + Sama_0527 0.78 +1.0 651,505 + Sama_0527 0.78 +0.5 651,505 + Sama_0527 0.78 -0.3 651,505 + Sama_0527 0.78 -1.3 651,505 + Sama_0527 0.78 +2.8 651,505 + Sama_0527 0.78 -0.6 651,505 + Sama_0527 0.78 +0.1 651,505 + Sama_0527 0.78 -0.7 651,505 + Sama_0527 0.78 -0.3 651,506 - Sama_0527 0.78 -0.3 651,506 - Sama_0527 0.78 +1.3 651,506 - Sama_0527 0.78 -1.5 651,506 - Sama_0527 0.78 -1.0 651,506 - Sama_0527 0.78 +0.7 651,506 - Sama_0527 0.78 +1.7 651,506 - Sama_0527 0.78 +0.4 651,506 - Sama_0527 0.78 +1.9 651,509 + Sama_0527 0.78 -0.8 651,509 + Sama_0527 0.78 -0.5 651,527 + Sama_0527 0.80 +0.1 651,527 + Sama_0527 0.80 +0.3 651,538 - Sama_0527 0.81 +1.7 651,538 - Sama_0527 0.81 -0.9 651,555 + Sama_0527 0.82 -0.5 651,555 + Sama_0527 0.82 -1.3 651,556 - Sama_0527 0.83 +0.5 651,556 - Sama_0527 0.83 -1.3 651,572 + Sama_0527 0.84 +0.3 651,573 - Sama_0527 0.84 -0.8 651,610 + Sama_0527 0.88 +0.7 651,610 + Sama_0527 0.88 +1.1 651,610 + Sama_0527 0.88 -0.5 651,610 + Sama_0527 0.88 -0.8 651,610 + Sama_0527 0.88 -1.5 651,611 - Sama_0527 0.88 +0.5 651,642 + -0.5 651,643 - +0.9 651,643 - -0.3 651,643 - +0.1 651,753 + -0.2 651,753 + +0.9 651,754 - +1.6 651,771 + -1.5 651,771 + -0.3 651,771 + -0.9 651,771 + -1.7 651,772 - +0.8 651,772 - -0.3 651,772 - +1.9 651,779 + -1.8 651,779 + -0.1 651,779 + -0.4 651,808 + -0.9 651,872 + Sama_0528 0.20 +0.0 651,872 + Sama_0528 0.20 -2.0 651,872 + Sama_0528 0.20 +0.3 651,873 - Sama_0528 0.20 -1.0 651,888 + Sama_0528 0.22 +0.1 651,889 - Sama_0528 0.22 -0.9 651,889 - Sama_0528 0.22 -0.9 651,889 - Sama_0528 0.22 +0.9 651,889 - Sama_0528 0.22 -0.9 651,969 - Sama_0528 0.35 +0.9 651,993 + Sama_0528 0.39 -0.6 652,013 - Sama_0528 0.42 -1.2 652,080 + Sama_0528 0.53 -1.7 652,189 + Sama_0528 0.71 +2.2 652,190 - Sama_0528 0.71 +1.9 652,190 - Sama_0528 0.71 +0.1 652,191 + Sama_0528 0.71 -1.2 652,192 - Sama_0528 0.72 -1.3 652,192 - Sama_0528 0.72 -0.7 652,198 + Sama_0528 0.73 -0.7 652,198 + Sama_0528 0.73 -0.8 652,199 - Sama_0528 0.73 +0.5 652,233 - Sama_0528 0.78 +1.7 652,233 - Sama_0528 0.78 +0.7 652,352 + -2.0 652,353 - -1.3 652,353 - +0.9 652,386 + +0.8 652,386 + -0.3 652,386 + +0.7 652,387 - +0.2 652,392 + +0.4 652,393 - -1.2 652,393 - +0.4 652,393 - +1.2 652,393 - -0.1 652,401 + +1.9 652,401 + -1.5 652,401 + -0.5 652,506 + -1.8 652,546 + +1.4 652,546 + -1.1 652,546 + -2.9 652,546 + +0.1 652,546 + +0.7 652,547 - +0.3 652,547 - +0.2 652,547 - -0.3 652,547 - +1.9 652,564 + -1.2 652,564 + -0.3 652,564 + -1.0 652,565 - -0.9 652,590 + -1.5 652,590 + -0.7 652,590 + -2.2 652,591 - +0.9 652,591 - +0.4 652,591 - -2.7 652,600 + +1.5 652,601 - -0.3 652,601 - -0.7 652,601 - -1.7 652,617 + Sama_0529 0.11 -0.3 652,617 + Sama_0529 0.11 -0.7 652,617 + Sama_0529 0.11 -0.1 652,617 + Sama_0529 0.11 +0.6 652,618 - Sama_0529 0.11 -1.8 652,618 - Sama_0529 0.11 +0.3 652,651 + Sama_0529 0.16 +0.4 652,651 + Sama_0529 0.16 -1.3 652,651 + Sama_0529 0.16 -1.0 652,651 + Sama_0529 0.16 -2.5 652,652 - Sama_0529 0.16 +1.7 652,652 - Sama_0529 0.16 +1.0 652,655 + Sama_0529 0.17 -0.6 652,655 + Sama_0529 0.17 +0.6 652,655 + Sama_0529 0.17 -1.0 652,656 - Sama_0529 0.17 -1.5 652,656 - Sama_0529 0.17 +0.2 652,656 - Sama_0529 0.17 +2.6 652,657 + Sama_0529 0.17 +1.0 652,657 + Sama_0529 0.17 +1.1 652,657 + Sama_0529 0.17 -1.7 652,658 - Sama_0529 0.17 +2.2 652,658 - Sama_0529 0.17 -3.4 652,745 - Sama_0529 0.30 -0.1 652,762 + Sama_0529 0.32 -0.3 652,762 + Sama_0529 0.32 -1.7 652,763 - Sama_0529 0.32 -2.7 652,763 - Sama_0529 0.32 -1.3 653,100 + Sama_0529 0.81 +1.7 653,100 + Sama_0529 0.81 -1.2 653,100 + Sama_0529 0.81 +0.1 653,100 + Sama_0529 0.81 +0.9 653,100 + Sama_0529 0.81 -2.6 653,101 - Sama_0529 0.82 +1.9 653,101 - Sama_0529 0.82 -0.3 653,104 + Sama_0529 0.82 -1.3 653,104 + Sama_0529 0.82 -0.7 653,104 + Sama_0529 0.82 -1.7 653,105 - Sama_0529 0.82 +1.9 653,105 - Sama_0529 0.82 +1.0 653,105 - Sama_0529 0.82 -1.3 653,105 - Sama_0529 0.82 -0.1 653,105 - Sama_0529 0.82 +0.5 653,107 + Sama_0529 0.82 -0.9 653,107 + Sama_0529 0.82 -2.3 653,108 - Sama_0529 0.83 -0.0 653,108 - Sama_0529 0.83 +1.1 653,184 + +0.7 653,184 + +1.0 653,184 + -0.7 653,184 + -1.2 653,185 - -0.3 653,185 - +0.3 653,207 + -0.2 653,207 + -0.3 653,207 + -1.5 653,208 - -0.9 653,208 - +0.8 653,208 - -0.8 653,208 - -1.3 653,208 - +1.1 653,208 - +0.7 653,209 + -0.1 653,209 + -1.3 653,209 + -0.3 653,209 + +0.9 653,209 + +1.1 653,210 - -1.3 653,210 - -2.0 653,210 - +0.4 653,210 - -0.1 653,285 + -0.6 653,285 + +1.0 653,285 + +0.9 653,285 + -1.5 653,286 - +0.8 653,297 + -0.7 653,298 - -1.5 653,313 + -1.5 653,337 + -0.4 653,348 - -1.1 653,352 + +0.8 653,353 - -0.3
Or see this region's nucleotide sequence