Strain Fitness in Shewanella amazonensis SB2B around Sama_0130

Experiment: Anaero. fumarate (e.a.)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate (e.a.)
144,093	+				+0.5
144,093	+				-0.5
144,093	+				+0.5
144,093	+				+1.2
144,094	-				-1.8
144,094	-				+1.8
144,094	-				+0.5
144,094	-				+0.9
144,094	-				-1.4
144,094	-				-0.7
144,094	-				+0.2
144,095	+				+0.8
144,095	+				-1.0
144,095	+				+0.7
144,095	+				-2.3
144,095	+				-0.1
144,095	+				+1.6
144,095	+				+0.3
144,096	-				+0.1
144,096	-				+1.0
144,096	-				+2.1
144,122	+				-0.3
144,149	+				+1.5
144,149	+				+0.6
144,149	+				-0.4
144,150	-				-0.7
144,151	+				+1.4
144,151	+				+0.8
144,151	+				+0.3
144,152	-				-2.7
144,152	-				-0.9
144,152	-				+1.4
144,152	-				+1.6
144,152	-				-0.9
144,152	-				-0.5
144,161	-				-1.4
144,216	-				-0.6
144,216	-				-1.8
144,221	+				-1.6
144,221	+				+0.2
144,221	+				+0.8
144,221	+				-0.1
144,221	+				-1.2
144,221	+				+0.4
144,221	+				-1.9
144,221	+				-1.7
144,221	+				+0.3
144,221	+				-1.7
144,221	+				-0.3
144,221	+				+1.4
144,221	+				-0.3
144,221	+				+1.8
144,221	+				+0.7
144,221	+				+0.1
144,221	+				-0.8
144,221	+				-0.3
144,221	+				+0.1
144,221	+				-1.3
144,221	+				-1.4
144,221	+				+0.0
144,222	-				-1.2
144,222	-				-0.5
144,222	-				-0.2
144,222	-				+1.8
144,222	-				-0.3
144,222	-				-0.5
144,222	-				+1.9
144,222	-				-0.8
144,222	-				-0.5
144,222	-				-0.5
144,222	-				-0.6
144,222	-				-0.0
144,222	-				+1.3
144,222	-				-0.5
144,222	-				-0.1
144,222	-				+2.9
144,222	-				+0.2
144,222	-				+0.2
144,222	-				-0.4
144,222	-				+0.3
144,222	-				-1.9
144,254	-				-2.5
144,326	+				-1.1
144,327	-				+0.1
144,415	+		Sama_0129	0.18	+0.3
144,415	+		Sama_0129	0.18	-1.9
144,415	+		Sama_0129	0.18	-1.2
144,415	+		Sama_0129	0.18	-0.3
144,415	+		Sama_0129	0.18	-0.3
144,415	+		Sama_0129	0.18	+2.4
144,415	+		Sama_0129	0.18	-0.6
144,415	+		Sama_0129	0.18	+1.6
144,416	-		Sama_0129	0.18	-1.0
144,416	-		Sama_0129	0.18	-0.1
144,416	-		Sama_0129	0.18	+2.2
144,416	-		Sama_0129	0.18	-0.6
144,416	-		Sama_0129	0.18	+1.1
144,416	-		Sama_0129	0.18	-0.5
144,416	-		Sama_0129	0.18	-0.8
144,418	+		Sama_0129	0.18	-1.6
144,418	+		Sama_0129	0.18	-0.4
144,418	+		Sama_0129	0.18	-1.6
144,418	+		Sama_0129	0.18	-0.6
144,418	+		Sama_0129	0.18	-1.4
144,418	+		Sama_0129	0.18	+0.1
144,418	+		Sama_0129	0.18	+0.6
144,418	+		Sama_0129	0.18	-0.7
144,418	+		Sama_0129	0.18	+0.8
144,418	+		Sama_0129	0.18	-0.6
144,418	+		Sama_0129	0.18	+0.2
144,419	-		Sama_0129	0.18	-1.0
144,419	-		Sama_0129	0.18	-1.3
144,419	-		Sama_0129	0.18	+0.6
144,419	-		Sama_0129	0.18	+1.2
144,419	-		Sama_0129	0.18	+1.1
144,419	-		Sama_0129	0.18	-0.4
144,419	-		Sama_0129	0.18	-0.2
144,419	-		Sama_0129	0.18	+1.1
144,419	-		Sama_0129	0.18	-1.0
144,495	+		Sama_0129	0.29	+0.0
144,496	-		Sama_0129	0.29	-1.4
144,496	-		Sama_0129	0.29	+0.4
144,525	+		Sama_0129	0.33	+1.3
144,526	-		Sama_0129	0.33	-1.5
144,526	-		Sama_0129	0.33	+0.8
144,526	-		Sama_0129	0.33	-1.4
144,527	+		Sama_0129	0.33	-1.3
144,527	+		Sama_0129	0.33	-0.6
144,527	+		Sama_0129	0.33	+0.4
144,527	+		Sama_0129	0.33	-1.5
144,527	+		Sama_0129	0.33	-0.7
144,527	+		Sama_0129	0.33	+0.0
144,527	+		Sama_0129	0.33	+0.2
144,527	+		Sama_0129	0.33	+1.6
144,527	+		Sama_0129	0.33	-1.2
144,528	-		Sama_0129	0.33	-0.9
144,528	-		Sama_0129	0.33	+2.1
144,528	-		Sama_0129	0.33	-0.9
144,528	-		Sama_0129	0.33	+0.6
144,528	-		Sama_0129	0.33	+1.5
144,541	+		Sama_0129	0.35	-1.0
144,541	+		Sama_0129	0.35	-0.5
144,541	+		Sama_0129	0.35	+2.5
144,541	+		Sama_0129	0.35	-1.8
144,554	+		Sama_0129	0.37	-0.9
144,555	-		Sama_0129	0.37	+0.2
144,568	+		Sama_0129	0.39	+0.3
144,568	+		Sama_0129	0.39	+0.5
144,568	+		Sama_0129	0.39	-2.3
144,653	+		Sama_0129	0.50	-0.8
144,653	+		Sama_0129	0.50	+0.2
144,654	-		Sama_0129	0.50	-1.7
144,654	-		Sama_0129	0.50	+0.3
144,654	-		Sama_0129	0.50	-0.3
144,654	-		Sama_0129	0.50	+1.0
144,669	-		Sama_0129	0.52	-1.5
144,676	+		Sama_0129	0.53	+1.7
144,676	+		Sama_0129	0.53	+0.7
144,676	+		Sama_0129	0.53	+0.8
144,676	+		Sama_0129	0.53	+1.2
144,676	+		Sama_0129	0.53	-0.1
144,676	+		Sama_0129	0.53	-1.9
144,676	+		Sama_0129	0.53	-0.2
144,676	+		Sama_0129	0.53	+0.6
144,676	+		Sama_0129	0.53	-1.5
144,676	+		Sama_0129	0.53	-0.0
144,677	-		Sama_0129	0.53	+0.1
144,677	-		Sama_0129	0.53	-0.5
144,680	+		Sama_0129	0.54	+0.2
144,680	+		Sama_0129	0.54	-0.4
144,680	+		Sama_0129	0.54	+0.3
144,680	+		Sama_0129	0.54	-0.1
144,680	+		Sama_0129	0.54	+2.0
144,680	+		Sama_0129	0.54	+0.4
144,680	+		Sama_0129	0.54	-2.3
144,680	+		Sama_0129	0.54	-0.4
144,680	+		Sama_0129	0.54	-1.2
144,680	+		Sama_0129	0.54	+1.6
144,681	-		Sama_0129	0.54	-0.6
144,681	-		Sama_0129	0.54	+1.2
144,681	-		Sama_0129	0.54	-1.0
144,681	-		Sama_0129	0.54	-0.1
144,681	-		Sama_0129	0.54	+1.6
144,681	-		Sama_0129	0.54	+0.5
144,681	-		Sama_0129	0.54	-1.5
144,681	-		Sama_0129	0.54	-1.3
144,681	-		Sama_0129	0.54	-0.3
144,685	+		Sama_0129	0.55	-0.2
144,685	+		Sama_0129	0.55	-1.4
144,685	+		Sama_0129	0.55	+0.3
144,685	+		Sama_0129	0.55	+0.0
144,686	-		Sama_0129	0.55	-0.7
144,686	-		Sama_0129	0.55	-0.9
144,686	-		Sama_0129	0.55	-0.8
144,710	-		Sama_0129	0.58	+2.3
144,718	+		Sama_0129	0.59	+0.6
144,718	+		Sama_0129	0.59	-1.0
144,718	+		Sama_0129	0.59	-1.1
144,718	+		Sama_0129	0.59	+0.1
144,718	+		Sama_0129	0.59	-0.5
144,718	+		Sama_0129	0.59	-0.3
144,718	+		Sama_0129	0.59	+1.4
144,718	+		Sama_0129	0.59	-0.8
144,719	-		Sama_0129	0.59	-0.8
144,719	-		Sama_0129	0.59	+1.4
144,719	-		Sama_0129	0.59	-0.4
144,719	-		Sama_0129	0.59	+0.8
144,719	-		Sama_0129	0.59	+1.4
144,719	-		Sama_0129	0.59	-0.1
144,719	-		Sama_0129	0.59	-2.7
144,719	-		Sama_0129	0.59	-1.1
144,721	+		Sama_0129	0.59	+0.8
144,721	+		Sama_0129	0.59	+0.4
144,721	+		Sama_0129	0.59	-2.0
144,721	+		Sama_0129	0.59	+0.7
144,721	+		Sama_0129	0.59	-1.0
144,721	+		Sama_0129	0.59	+3.9
144,721	+		Sama_0129	0.59	-0.8
144,722	-		Sama_0129	0.60	-0.0
144,722	-		Sama_0129	0.60	+0.1
144,722	-		Sama_0129	0.60	-1.3
144,722	-		Sama_0129	0.60	+0.2
144,722	-		Sama_0129	0.60	+1.3
144,747	+		Sama_0129	0.63	-2.0
144,747	+		Sama_0129	0.63	+1.2
144,747	+		Sama_0129	0.63	-0.3
144,747	+		Sama_0129	0.63	+1.2
144,747	+		Sama_0129	0.63	-2.0
144,747	+		Sama_0129	0.63	+0.1
144,748	-		Sama_0129	0.63	+0.8
144,748	-		Sama_0129	0.63	-2.4
144,748	-		Sama_0129	0.63	-2.5
144,748	-		Sama_0129	0.63	+0.2
144,748	-		Sama_0129	0.63	-1.0
144,774	+		Sama_0129	0.67	-0.1
144,774	+		Sama_0129	0.67	-1.8
144,794	-		Sama_0129	0.69	-0.3
144,825	-		Sama_0129	0.74	-1.8
144,942	+		Sama_0129	0.90	+1.5
144,943	-		Sama_0129	0.90	-0.9
144,953	+				-0.5
144,954	-				-0.8
145,073	-				-2.4
145,100	+				-1.0
145,100	+				+0.8
145,100	+				-1.9
145,117	+				-1.2
145,117	+				-1.4
145,118	-				-1.5
145,118	-				-0.9
145,118	-				+0.8
145,118	-				-2.3
145,118	-				-0.2
145,163	+				-0.4
145,272	+		Sama_0130	0.14	-2.1
145,285	+		Sama_0130	0.15	-2.2
145,285	+		Sama_0130	0.15	-3.3
145,285	+		Sama_0130	0.15	-1.7
145,286	-		Sama_0130	0.15	-0.7
145,286	-		Sama_0130	0.15	-0.5
145,286	-		Sama_0130	0.15	-0.5
145,287	+		Sama_0130	0.15	-1.0
145,287	+		Sama_0130	0.15	-2.6
145,288	-		Sama_0130	0.15	-3.0
145,288	-		Sama_0130	0.15	-1.7
145,288	-		Sama_0130	0.15	-2.9
145,288	-		Sama_0130	0.15	-2.5
145,288	-		Sama_0130	0.15	-1.7
145,288	-		Sama_0130	0.15	-2.1
145,370	+		Sama_0130	0.21	-1.9
145,370	+		Sama_0130	0.21	-0.5
145,371	-		Sama_0130	0.21	-3.0
145,371	-		Sama_0130	0.21	-2.0
145,371	-		Sama_0130	0.21	-1.4
145,371	-		Sama_0130	0.21	-1.6
145,371	-		Sama_0130	0.21	+0.2
145,371	-		Sama_0130	0.21	-2.5
145,444	+		Sama_0130	0.27	-0.2
145,476	+		Sama_0130	0.29	-0.5
145,476	+		Sama_0130	0.29	-1.4
145,476	+		Sama_0130	0.29	-2.5
145,476	+		Sama_0130	0.29	-0.5
145,476	+		Sama_0130	0.29	-0.7
145,476	+		Sama_0130	0.29	-0.8
145,477	-		Sama_0130	0.29	-0.9
145,477	-		Sama_0130	0.29	+0.3
145,477	-		Sama_0130	0.29	-1.8
145,477	-		Sama_0130	0.29	-1.8
145,477	-		Sama_0130	0.29	-1.3
145,477	-		Sama_0130	0.29	-1.8
145,477	-		Sama_0130	0.29	-2.2
145,505	+		Sama_0130	0.31	-1.5
145,505	+		Sama_0130	0.31	-0.5
145,505	+		Sama_0130	0.31	-1.1
145,506	-		Sama_0130	0.31	-1.3
145,506	-		Sama_0130	0.31	-2.4
145,506	-		Sama_0130	0.31	+0.8
145,506	-		Sama_0130	0.31	-1.4
145,506	-		Sama_0130	0.31	-0.7
145,506	-		Sama_0130	0.31	-2.0
145,544	-		Sama_0130	0.34	-2.1
145,556	+		Sama_0130	0.35	-1.0
145,556	+		Sama_0130	0.35	-1.9
145,557	-		Sama_0130	0.35	-1.8
145,557	-		Sama_0130	0.35	+0.2
145,557	-		Sama_0130	0.35	-3.1
145,557	-		Sama_0130	0.35	-1.9
145,557	-		Sama_0130	0.35	-3.9
145,649	+		Sama_0130	0.42	-3.8
145,649	+		Sama_0130	0.42	-1.4
145,649	+		Sama_0130	0.42	-2.4
145,649	+		Sama_0130	0.42	-2.0
145,650	-		Sama_0130	0.42	-0.5
145,650	-		Sama_0130	0.42	-2.3
145,650	-		Sama_0130	0.42	-1.9
145,650	-		Sama_0130	0.42	-3.1
145,650	-		Sama_0130	0.42	+0.6
145,653	+		Sama_0130	0.42	-0.6
145,653	+		Sama_0130	0.42	-1.7
145,653	+		Sama_0130	0.42	-1.7
145,653	+		Sama_0130	0.42	-0.5
145,654	-		Sama_0130	0.42	-0.8
145,654	-		Sama_0130	0.42	-1.8
145,654	-		Sama_0130	0.42	-1.2
145,654	-		Sama_0130	0.42	-2.4
145,654	-		Sama_0130	0.42	-2.4
145,654	-		Sama_0130	0.42	-2.0
145,654	-		Sama_0130	0.42	-1.9
145,654	-		Sama_0130	0.42	-2.1
145,678	+		Sama_0130	0.44	-2.3
145,679	-		Sama_0130	0.44	-1.5
145,901	+		Sama_0130	0.60	-3.5
145,901	+		Sama_0130	0.60	-0.5
145,907	+		Sama_0130	0.61	-0.4
145,907	+		Sama_0130	0.61	-3.1
145,908	-		Sama_0130	0.61	-2.2
145,908	-		Sama_0130	0.61	-1.9
145,944	-		Sama_0130	0.64	-1.5
146,006	-		Sama_0130	0.68	-2.0
146,012	-		Sama_0130	0.69	-2.7
146,012	-		Sama_0130	0.69	-3.4
146,063	+		Sama_0130	0.72	-0.5
146,063	+		Sama_0130	0.72	-0.3
146,099	+		Sama_0130	0.75	-1.8
146,099	+		Sama_0130	0.75	-2.1
146,099	+		Sama_0130	0.75	-1.6
146,099	+		Sama_0130	0.75	-0.9
146,099	+		Sama_0130	0.75	-1.0
146,100	-		Sama_0130	0.75	-2.6
146,100	-		Sama_0130	0.75	-2.2
146,117	+		Sama_0130	0.76	-2.1
146,117	+		Sama_0130	0.76	-1.7
146,117	+		Sama_0130	0.76	-1.5
146,127	+		Sama_0130	0.77	-0.8
146,127	+		Sama_0130	0.77	-0.8
146,127	+		Sama_0130	0.77	-3.2
146,128	-		Sama_0130	0.77	-1.7
146,128	-		Sama_0130	0.77	-1.6
146,128	-		Sama_0130	0.77	-1.3
146,128	-		Sama_0130	0.77	-1.0
146,128	-		Sama_0130	0.77	-0.0
146,128	-		Sama_0130	0.77	-2.3
146,148	+		Sama_0130	0.79	-1.5
146,148	+		Sama_0130	0.79	-0.2
146,148	+		Sama_0130	0.79	-0.8
146,148	+		Sama_0130	0.79	-2.4
146,148	+		Sama_0130	0.79	+1.9
146,148	+		Sama_0130	0.79	-1.4
146,148	+		Sama_0130	0.79	-1.0
146,148	+		Sama_0130	0.79	-1.9
146,148	+		Sama_0130	0.79	-2.0
146,148	+		Sama_0130	0.79	+0.2
146,148	+		Sama_0130	0.79	-2.8
146,149	-		Sama_0130	0.79	+0.2
146,149	-		Sama_0130	0.79	-2.2
146,149	-		Sama_0130	0.79	-1.4
146,149	-		Sama_0130	0.79	-2.8
146,149	-		Sama_0130	0.79	-1.6
146,172	+		Sama_0130	0.80	-1.1
146,173	-		Sama_0130	0.81	-0.9
146,257	+		Sama_0130	0.87	-1.5
146,257	+		Sama_0130	0.87	-2.2
146,257	+		Sama_0130	0.87	-0.8
146,258	-		Sama_0130	0.87	-2.7
146,258	-		Sama_0130	0.87	-0.5
146,274	+		Sama_0130	0.88	-3.7
146,274	+		Sama_0130	0.88	-1.7
146,274	+		Sama_0130	0.88	-1.4
146,274	+		Sama_0130	0.88	-0.5
146,274	+		Sama_0130	0.88	-2.9
146,275	-		Sama_0130	0.88	-2.3
146,275	-		Sama_0130	0.88	-0.8
146,275	-		Sama_0130	0.88	-0.2
146,275	-		Sama_0130	0.88	-1.1
146,275	-		Sama_0130	0.88	-1.9
146,275	-		Sama_0130	0.88	-2.9
146,275	-		Sama_0130	0.88	-1.4
146,286	+		Sama_0130	0.89	-2.5
146,286	+		Sama_0130	0.89	-1.0
146,287	-		Sama_0130	0.89	-3.9
146,287	-		Sama_0130	0.89	-1.7
146,313	-				-2.5
146,374	+				-1.0
146,374	+				-2.0
146,374	+				-2.3
146,375	-				+0.2
146,458	+				-2.9
146,458	+				-2.2
146,458	+				-3.0
146,458	+				+0.5
146,458	+				-3.1
146,458	+				-2.2
146,459	-				+0.6
146,459	-				-0.6
146,459	-				-2.0
146,459	-				-0.5
146,459	-				-0.9
146,474	+				-1.4
146,474	+				-0.2
146,474	+				-1.9
146,475	-				-1.6
146,475	-				+1.5
146,483	+				-1.2
146,483	+				+2.3
146,493	+				-1.6
146,493	+				-0.5
146,493	+				-1.0
146,493	+				-1.1
146,494	-				-0.0
146,494	-				+0.3
146,494	-				+0.6
146,494	-				+0.7
146,494	-				+0.9
146,494	-				-0.2
146,494	-				+0.1
146,494	-				+0.1
146,497	+				-1.0
146,497	+				-2.4
146,497	+				-1.5
146,498	-				+0.8
146,498	-				-2.6
146,498	-				+2.0
146,498	-				+0.1
146,498	-				+1.1
146,555	+				-1.3
146,556	-				+3.0
146,685	+				+2.5
146,694	+				-0.0
146,694	+				-1.9
146,694	+				+0.5
146,695	-				+1.5
146,695	-				+1.1
146,695	-				-0.0
146,695	-				-1.9
146,695	-				-1.3
146,764	+				+2.2
146,819	+				-1.5
146,889	+				-0.3
146,889	+				+0.7
146,889	+				-0.3
146,890	-				-1.6
146,958	+				+0.0
146,959	-				+1.0
146,959	-				+1.3
146,959	-				-1.1
146,974	-				-0.4
147,015	+		Sama_0131	0.11	-1.1
147,016	-		Sama_0131	0.11	+1.2
147,039	+		Sama_0131	0.12	-0.8
147,054	+		Sama_0131	0.13	+0.7
147,082	-		Sama_0131	0.14	+3.3
147,097	-		Sama_0131	0.15	+0.8
147,217	+		Sama_0131	0.20	-0.2
147,218	-		Sama_0131	0.20	-1.0
147,243	-		Sama_0131	0.22	-0.8
147,415	+		Sama_0131	0.30	-2.5
147,416	-		Sama_0131	0.30	-0.0