Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0025 and SOA0026 are separated by 76 nucleotides SOA0026 and SO_A0028 are separated by 70 nucleotides
SOA0024: SOA0024 - ISSod1, transposase OrfB (NCBI ptt file), at 19,523 to 20,332
SOA0024
SO_A0025: SO_A0025 - ISSod1, transposase OrfA (NCBI), at 19,523 to 20,682
_A0025
SOA0026: SOA0026 - site-specific recombinase, resolvase family (NCBI ptt file), at 20,759 to 21,067
SOA0026
SO_A0028: SO_A0028 - ISSod1, transposase OrfA (NCBI), at 21,138 to 22,297
_A0028
SOA0029: SOA0029 - ISSod1, transposase OrfB (NCBI ptt file), at 21,488 to 22,297
SOA0029
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.745 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.778 kb on - strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.785 kb on + strand at 20.792 kb on - strand, within SOA0026 at 20.793 kb on + strand, within SOA0026 at 20.801 kb on - strand, within SOA0026 at 20.808 kb on + strand, within SOA0026 at 20.816 kb on - strand, within SOA0026 at 20.819 kb on + strand, within SOA0026 at 20.822 kb on + strand, within SOA0026 at 20.827 kb on + strand, within SOA0026 at 20.827 kb on + strand, within SOA0026 at 20.835 kb on - strand, within SOA0026 at 20.837 kb on + strand, within SOA0026 at 20.837 kb on + strand, within SOA0026 at 20.845 kb on - strand, within SOA0026 at 20.845 kb on - strand, within SOA0026 at 20.845 kb on - strand, within SOA0026 at 20.872 kb on + strand, within SOA0026 at 20.916 kb on - strand, within SOA0026 at 20.970 kb on + strand, within SOA0026 at 20.978 kb on - strand, within SOA0026 at 20.978 kb on - strand, within SOA0026 at 21.009 kb on + strand, within SOA0026 at 21.017 kb on - strand, within SOA0026 at 21.064 kb on + strand at 21.080 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 20,735 + +0.7 20,735 + -1.6 20,735 + +0.9 20,735 + -1.3 20,735 + +0.4 20,735 + -0.8 20,735 + +0.9 20,735 + +1.3 20,735 + +0.5 20,735 + +0.6 20,745 + -0.3 20,750 + -0.3 20,750 + +0.6 20,750 + +0.6 20,750 + +0.5 20,750 + -0.1 20,750 + +0.4 20,750 + -0.2 20,750 + +0.3 20,750 + +1.5 20,750 + +1.3 20,750 + -0.4 20,750 + +0.3 20,750 + +0.3 20,750 + +0.3 20,750 + +0.2 20,758 - -0.1 20,758 - +1.2 20,758 - +0.8 20,758 - +1.0 20,758 - +1.9 20,758 - +0.3 20,758 - -0.0 20,758 - +0.4 20,758 - +0.9 20,758 - -0.9 20,758 - -0.1 20,778 - +0.5 20,784 + -0.8 20,784 + +0.4 20,784 + -0.4 20,784 + +0.5 20,784 + +0.5 20,785 + +0.0 20,792 - SOA0026 0.11 +0.7 20,793 + SOA0026 0.11 +0.3 20,801 - SOA0026 0.14 +1.2 20,808 + SOA0026 0.16 +0.2 20,816 - SOA0026 0.18 -0.7 20,819 + SOA0026 0.19 +1.3 20,822 + SOA0026 0.20 +0.4 20,827 + SOA0026 0.22 +0.6 20,827 + SOA0026 0.22 +0.2 20,835 - SOA0026 0.25 +1.3 20,837 + SOA0026 0.25 +0.1 20,837 + SOA0026 0.25 +0.5 20,845 - SOA0026 0.28 +0.7 20,845 - SOA0026 0.28 +0.1 20,845 - SOA0026 0.28 +0.6 20,872 + SOA0026 0.37 -2.3 20,916 - SOA0026 0.51 +0.9 20,970 + SOA0026 0.68 +0.0 20,978 - SOA0026 0.71 +0.1 20,978 - SOA0026 0.71 +0.7 21,009 + SOA0026 0.81 -1.4 21,017 - SOA0026 0.83 +0.2 21,064 + -0.0 21,080 - +1.3 21,085 - -0.7 21,085 - -0.1 21,085 - -0.2 21,085 - +0.2 21,085 - -0.4 21,085 - -0.3 21,086 - -0.3
Or see this region's nucleotide sequence