Strain Fitness in Shewanella oneidensis MR-1 around SO4066

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
4,218,703	+		SO4064	0.40	+0.4
4,218,703	+		SO4064	0.40	-0.7
4,218,703	+		SO4064	0.40	-0.7
4,218,703	+		SO4064	0.40	+0.3
4,218,703	+		SO4064	0.40	-0.4
4,218,711	-		SO4064	0.41	-0.0
4,218,711	-		SO4064	0.41	+0.6
4,218,711	-		SO4064	0.41	+0.0
4,218,722	-		SO4064	0.42	-0.2
4,218,727	+		SO4064	0.43	-0.4
4,218,746	+		SO4064	0.45	+0.0
4,218,754	-		SO4064	0.46	+1.5
4,218,756	+		SO4064	0.46	-0.8
4,218,764	-		SO4064	0.47	+2.9
4,218,799	-		SO4064	0.52	+0.5
4,218,824	-		SO4064	0.55	+0.0
4,218,995	-		SO4064	0.76	+1.5
4,219,019	+		SO4064	0.79	-0.3
4,219,039	-		SO4064	0.82	-0.2
4,219,041	+		SO4064	0.82	+0.5
4,219,066	+		SO4064	0.85	+1.5
4,219,149	-				+0.2
4,219,155	+				+0.2
4,219,158	-				-0.4
4,219,200	+				-0.9
4,219,208	-				-0.2
4,219,213	+				+0.1
4,219,225	+				+0.3
4,219,225	+				+0.6
4,219,225	+				+0.5
4,219,297	-				-0.2
4,219,389	-				-5.3
4,219,398	-				-2.5
4,219,398	-				-3.5
4,219,398	-				-4.4
4,219,425	+				-2.8
4,219,439	+				-3.8
4,219,444	+				-2.9
4,219,449	+				-4.1
4,219,457	-				-3.9
4,219,457	-				-4.9
4,219,514	-				-1.8
4,219,514	-				-2.9
4,219,514	-				-3.5
4,219,627	+				-4.4
4,219,660	+				-3.7
4,219,668	-				-4.8
4,219,676	-				-3.1
4,219,697	+				-4.5
4,219,823	-		SO4066	0.12	-4.2
4,219,835	-		SO4066	0.13	-5.0
4,219,867	-		SO4066	0.16	-3.4
4,219,868	-		SO4066	0.16	-2.9
4,219,888	+		SO4066	0.18	-3.0
4,219,943	-		SO4066	0.23	-3.0
4,220,121	+		SO4066	0.39	-3.0
4,220,121	+		SO4066	0.39	-4.3
4,220,121	+		SO4066	0.39	-4.1
4,220,121	+		SO4066	0.39	-3.5
4,220,121	+		SO4066	0.39	-5.2
4,220,121	+		SO4066	0.39	-4.2
4,220,129	-		SO4066	0.39	-3.2
4,220,129	-		SO4066	0.39	-3.0
4,220,129	-		SO4066	0.39	-4.7
4,220,253	+		SO4066	0.51	-2.9
4,220,331	-		SO4066	0.58	-4.1
4,220,365	-		SO4066	0.61	-3.8
4,220,365	-		SO4066	0.61	-2.2
4,220,368	+		SO4066	0.61	-1.8
4,220,376	+		SO4066	0.62	-0.8
4,220,384	-		SO4066	0.63	-5.3
4,220,458	-		SO4066	0.69	-3.9
4,220,483	+		SO4066	0.72	-4.2
4,220,483	+		SO4066	0.72	-4.1
4,220,632	+		SO4066	0.85	-1.5
4,220,640	-		SO4066	0.86	-4.4
4,220,643	+		SO4066	0.86	-2.9
4,220,685	+		SO4066	0.90	-2.5
4,220,685	+		SO4066	0.90	-3.8
4,220,687	-				-5.6
4,220,744	-				-5.3
4,220,777	+				-0.4
4,220,785	-				-3.2
4,220,860	+				+0.2
4,220,907	+				+0.2
4,220,925	-				+0.1
4,220,962	-				-0.5
4,221,181	+				-0.1
4,221,186	+				-0.3
4,221,186	+				+0.2
4,221,190	+				+0.0
4,221,193	+				-0.0
4,221,193	+				+1.0
4,221,193	+				-0.0
4,221,198	+				+0.1
4,221,198	+				+0.2
4,221,206	-				+1.2
4,221,206	-				+0.6
4,221,211	+				+1.1
4,221,214	-				-0.3
4,221,242	+				+0.3
4,221,242	+				+1.3
4,221,242	+				-0.0
4,221,250	-				-0.2
4,221,250	-				+0.1
4,221,262	-				+0.3
4,221,334	-				+1.0
4,221,368	+				+0.9
4,221,368	+				-0.3
4,221,372	+				-1.3
4,221,372	+				+0.5
4,221,372	+				+0.3
4,221,372	+				-0.3
4,221,372	+				-0.2
4,221,372	+				+0.1
4,221,372	+				-0.1
4,221,372	+				+0.4
4,221,372	+				+0.1
4,221,376	-				+0.1
4,221,376	-				+0.4
4,221,377	+				-0.3
4,221,380	-				-0.2
4,221,380	-				-0.3
4,221,454	-				-0.2
4,221,481	-				+0.1
4,221,481	-				+0.0
4,221,486	+				+0.8
4,221,486	+				+0.2
4,221,492	+				+0.4
4,221,492	+				-1.0
4,221,494	-				-0.5
4,221,494	-				-0.0
4,221,494	-				-2.4
4,221,494	-				+0.6
4,221,496	-				+0.5
4,221,500	-				+0.6
4,221,514	-				-0.1
4,221,514	-				+0.0
4,221,514	-				-0.4
4,221,514	-				-0.0
4,221,514	-				+0.8
4,221,514	-				+0.5
4,221,537	+				-0.0
4,221,537	+				+0.5
4,221,557	+				-0.1
4,221,594	-				-0.2
4,221,598	-				-0.2
4,221,603	+				-0.3
4,221,605	+				-0.0
4,221,605	+				+0.2
4,221,605	+				-0.1
4,221,605	+				+0.5
4,221,605	+				+0.1
4,221,605	+				+0.6
4,221,613	-				+0.2
4,221,613	-				-0.0
4,221,613	-				-0.5
4,221,613	-				+0.4
4,221,613	-				+1.2
4,221,613	-				+0.4
4,221,613	-				+0.3
4,221,622	+				-0.0
4,221,626	+				-0.1
4,221,629	-				+0.6
4,221,639	+				+0.7
4,221,640	+				+0.2
4,221,640	+				-0.7
4,221,640	+				+0.5
4,221,644	+				+0.6
4,221,647	-				-0.6
4,221,647	-				+1.6
4,221,647	-				+0.2
4,221,657	-		SO4068	0.10	+1.8
4,221,664	+		SO4068	0.10	+0.1
4,221,672	-		SO4068	0.11	-0.6
4,221,707	+		SO4068	0.12	-0.0
4,221,707	+		SO4068	0.12	-0.4
4,221,707	+		SO4068	0.12	-0.3
4,221,707	+		SO4068	0.12	-0.1
4,221,707	+		SO4068	0.12	-0.4
4,221,707	+		SO4068	0.12	+0.4
4,221,707	+		SO4068	0.12	-0.3
4,221,707	+		SO4068	0.12	-0.3
4,221,707	+		SO4068	0.12	+0.7
4,221,707	+		SO4068	0.12	-0.8
4,221,707	+		SO4068	0.12	+0.5
4,221,707	+		SO4068	0.12	-0.4
4,221,707	+		SO4068	0.12	-0.2
4,221,707	+		SO4068	0.12	-0.4
4,221,707	+		SO4068	0.12	+0.2
4,221,707	+		SO4068	0.12	-0.2
4,221,707	+		SO4068	0.12	-0.3
4,221,707	+		SO4068	0.12	-0.1
4,221,707	+		SO4068	0.12	-0.2
4,221,707	+		SO4068	0.12	-0.0
4,221,707	+		SO4068	0.12	-0.7
4,221,707	+		SO4068	0.12	+0.5
4,221,709	+		SO4068	0.13	-0.0
4,221,715	-		SO4068	0.13	-0.0
4,221,715	-		SO4068	0.13	+0.1
4,221,715	-		SO4068	0.13	-1.2
4,221,715	-		SO4068	0.13	-0.5
4,221,715	-		SO4068	0.13	-0.2
4,221,715	-		SO4068	0.13	-1.0
4,221,715	-		SO4068	0.13	-0.3
4,221,715	-		SO4068	0.13	+1.0
4,221,715	-		SO4068	0.13	+0.0
4,221,715	-		SO4068	0.13	+0.8
4,221,715	-		SO4068	0.13	+0.1
4,221,715	-		SO4068	0.13	-0.2
4,221,715	-		SO4068	0.13	-0.3
4,221,715	-		SO4068	0.13	-1.4
4,221,715	-		SO4068	0.13	+0.8
4,221,715	-		SO4068	0.13	-0.4
4,221,715	-		SO4068	0.13	-0.5
4,221,715	-		SO4068	0.13	-0.3
4,221,715	-		SO4068	0.13	-0.0
4,221,715	-		SO4068	0.13	+0.4
4,221,789	+		SO4068	0.16	+0.7
4,221,790	-		SO4068	0.16	+1.2
4,221,790	-		SO4068	0.16	+0.5