Strain Fitness in Shewanella amazonensis SB2B around Sama_3553

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
4,183,976	+		Sama_3552	0.13	-0.3
4,183,976	+		Sama_3552	0.13	+0.6
4,183,977	-		Sama_3552	0.13	-0.4
4,183,977	-		Sama_3552	0.13	+0.6
4,183,977	-		Sama_3552	0.13	-0.0
4,183,992	+		Sama_3552	0.15	+0.2
4,183,992	+		Sama_3552	0.15	+0.2
4,183,992	+		Sama_3552	0.15	-0.6
4,183,992	+		Sama_3552	0.15	+0.9
4,183,992	+		Sama_3552	0.15	+0.9
4,183,992	+		Sama_3552	0.15	+0.5
4,183,993	-		Sama_3552	0.16	-0.9
4,183,993	-		Sama_3552	0.16	+0.6
4,183,993	-		Sama_3552	0.16	+0.3
4,183,993	-		Sama_3552	0.16	-0.3
4,183,993	-		Sama_3552	0.16	+0.4
4,183,993	-		Sama_3552	0.16	+0.8
4,183,993	-		Sama_3552	0.16	-0.6
4,183,994	+		Sama_3552	0.16	+0.3
4,183,994	+		Sama_3552	0.16	-1.2
4,183,994	+		Sama_3552	0.16	-0.4
4,183,994	+		Sama_3552	0.16	-0.8
4,183,994	+		Sama_3552	0.16	-0.4
4,183,995	-		Sama_3552	0.16	+0.3
4,183,995	-		Sama_3552	0.16	+1.1
4,183,995	-		Sama_3552	0.16	-0.0
4,183,995	-		Sama_3552	0.16	+0.3
4,184,014	+		Sama_3552	0.18	-0.3
4,184,014	+		Sama_3552	0.18	-0.2
4,184,015	-		Sama_3552	0.19	-0.4
4,184,015	-		Sama_3552	0.19	-1.0
4,184,070	-		Sama_3552	0.26	-0.3
4,184,111	+		Sama_3552	0.32	+0.6
4,184,111	+		Sama_3552	0.32	+0.1
4,184,111	+		Sama_3552	0.32	+0.1
4,184,111	+		Sama_3552	0.32	+1.0
4,184,111	+		Sama_3552	0.32	-0.3
4,184,111	+		Sama_3552	0.32	-0.9
4,184,112	-		Sama_3552	0.32	+1.2
4,184,112	-		Sama_3552	0.32	-0.2
4,184,112	-		Sama_3552	0.32	-0.5
4,184,112	-		Sama_3552	0.32	-0.5
4,184,112	-		Sama_3552	0.32	-1.7
4,184,112	-		Sama_3552	0.32	-0.7
4,184,129	+		Sama_3552	0.34	+0.8
4,184,129	+		Sama_3552	0.34	-1.0
4,184,130	-		Sama_3552	0.34	-0.3
4,184,130	-		Sama_3552	0.34	+0.3
4,184,130	-		Sama_3552	0.34	+0.1
4,184,130	-		Sama_3552	0.34	-0.8
4,184,130	-		Sama_3552	0.34	-1.1
4,184,130	-		Sama_3552	0.34	-0.2
4,184,130	-		Sama_3552	0.34	-1.1
4,184,130	-		Sama_3552	0.34	+0.2
4,184,130	-		Sama_3552	0.34	+1.7
4,184,130	-		Sama_3552	0.34	-0.5
4,184,130	-		Sama_3552	0.34	+0.2
4,184,153	-		Sama_3552	0.37	+0.9
4,184,153	-		Sama_3552	0.37	-0.9
4,184,153	-		Sama_3552	0.37	+0.1
4,184,153	-		Sama_3552	0.37	+0.3
4,184,196	+		Sama_3552	0.43	-0.7
4,184,196	+		Sama_3552	0.43	+0.4
4,184,197	-		Sama_3552	0.43	+0.6
4,184,197	-		Sama_3552	0.43	-0.4
4,184,197	-		Sama_3552	0.43	-0.8
4,184,243	+		Sama_3552	0.50	-0.1
4,184,243	+		Sama_3552	0.50	+0.7
4,184,243	+		Sama_3552	0.50	-0.7
4,184,243	+		Sama_3552	0.50	-1.2
4,184,244	-		Sama_3552	0.50	+1.0
4,184,244	-		Sama_3552	0.50	+0.2
4,184,244	-		Sama_3552	0.50	-0.2
4,184,244	-		Sama_3552	0.50	-0.1
4,184,244	-		Sama_3552	0.50	-0.7
4,184,252	+		Sama_3552	0.51	+0.2
4,184,253	-		Sama_3552	0.51	-0.1
4,184,253	-		Sama_3552	0.51	+0.0
4,184,273	+		Sama_3552	0.54	-1.3
4,184,273	+		Sama_3552	0.54	-0.3
4,184,273	+		Sama_3552	0.54	-1.1
4,184,294	+		Sama_3552	0.56	+0.7
4,184,294	+		Sama_3552	0.56	-0.3
4,184,294	+		Sama_3552	0.56	+1.3
4,184,294	+		Sama_3552	0.56	-0.5
4,184,294	+		Sama_3552	0.56	-1.1
4,184,295	-		Sama_3552	0.57	-1.0
4,184,295	-		Sama_3552	0.57	-1.2
4,184,295	-		Sama_3552	0.57	-0.5
4,184,295	-		Sama_3552	0.57	-1.0
4,184,334	+		Sama_3552	0.62	-0.1
4,184,335	-		Sama_3552	0.62	+0.2
4,184,347	+		Sama_3552	0.64	+0.9
4,184,347	+		Sama_3552	0.64	+0.2
4,184,347	+		Sama_3552	0.64	+0.3
4,184,347	+		Sama_3552	0.64	+0.5
4,184,348	-		Sama_3552	0.64	+0.8
4,184,379	+		Sama_3552	0.68	-1.3
4,184,379	+		Sama_3552	0.68	+0.7
4,184,380	-		Sama_3552	0.68	+0.2
4,184,380	-		Sama_3552	0.68	+1.1
4,184,380	-		Sama_3552	0.68	-1.4
4,184,402	+		Sama_3552	0.71	+1.1
4,184,402	+		Sama_3552	0.71	+1.5
4,184,402	+		Sama_3552	0.71	+0.9
4,184,403	-		Sama_3552	0.71	-0.2
4,184,403	-		Sama_3552	0.71	-0.4
4,184,403	-		Sama_3552	0.71	+0.7
4,184,489	+		Sama_3552	0.83	+0.2
4,184,489	+		Sama_3552	0.83	+0.1
4,184,489	+		Sama_3552	0.83	+0.2
4,184,489	+		Sama_3552	0.83	+0.1
4,184,490	-		Sama_3552	0.83	-0.6
4,184,490	-		Sama_3552	0.83	+1.5
4,184,533	+		Sama_3552	0.89	+0.4
4,184,624	+				+0.3
4,184,624	+				+0.5
4,184,624	+				+1.9
4,184,624	+				+1.1
4,184,624	+				-0.4
4,184,624	+				+0.4
4,184,624	+				+1.3
4,184,625	-				-0.3
4,184,625	-				-0.5
4,184,625	-				-1.1
4,184,625	-				+0.1
4,184,625	-				+0.2
4,184,625	-				-0.2
4,184,653	+				+0.8
4,184,654	+				+0.3
4,184,655	-				+0.3
4,184,655	-				-0.3
4,184,655	-				-0.7
4,184,708	+				-1.2
4,184,708	+				-0.2
4,184,718	+				-1.1
4,184,718	+				-0.4
4,184,718	+				+0.9
4,184,719	-				-0.5
4,184,719	-				-0.7
4,184,719	-				-2.0
4,184,724	+				-0.8
4,184,724	+				+1.1
4,184,725	-				-1.2
4,184,725	-				-2.2
4,184,725	-				+0.2
4,184,725	-				+0.4
4,184,748	+				+0.2
4,184,775	+				-0.8
4,184,776	-				-1.7
4,184,787	+				-0.1
4,184,797	+				-0.5
4,184,798	-				-0.1
4,184,820	+				-1.1
4,184,820	+				-0.5
4,184,820	+				-0.5
4,184,821	-				-3.2
4,184,821	-				-0.1
4,184,821	-				-1.7
4,184,821	-				-3.6
4,184,836	+				-1.1
4,184,837	-				-0.8
4,184,837	-				-1.7
4,184,883	+				-2.8
4,184,883	+				-0.4
4,184,884	-				-2.6
4,184,884	-				-0.4
4,184,896	-				-1.7
4,184,960	+				-1.1
4,184,960	+				+0.9
4,184,960	+				-1.6
4,184,961	-				-1.2
4,184,961	-				-2.1
4,185,007	+				-1.1
4,185,007	+				-3.1
4,185,008	-				-0.7
4,185,008	-				-0.8
4,185,206	+		Sama_3553	0.20	-2.0
4,185,206	+		Sama_3553	0.20	-4.7
4,185,206	+		Sama_3553	0.20	-2.1
4,185,206	+		Sama_3553	0.20	-1.9
4,185,206	+		Sama_3553	0.20	-2.4
4,185,207	-		Sama_3553	0.20	-3.2
4,185,249	+		Sama_3553	0.24	-0.9
4,185,270	+		Sama_3553	0.26	-2.7
4,185,270	+		Sama_3553	0.26	-2.1
4,185,270	+		Sama_3553	0.26	-1.7
4,185,270	+		Sama_3553	0.26	-1.8
4,185,271	-		Sama_3553	0.26	-1.9
4,185,271	-		Sama_3553	0.26	-2.2
4,185,271	-		Sama_3553	0.26	-0.8
4,185,271	-		Sama_3553	0.26	-2.2
4,185,272	+		Sama_3553	0.26	-2.6
4,185,272	+		Sama_3553	0.26	-1.5
4,185,272	+		Sama_3553	0.26	-1.2
4,185,273	-		Sama_3553	0.26	-2.9
4,185,273	-		Sama_3553	0.26	-2.7
4,185,273	-		Sama_3553	0.26	-0.1
4,185,418	-		Sama_3553	0.39	-0.1
4,185,418	-		Sama_3553	0.39	-3.2
4,185,418	-		Sama_3553	0.39	-1.1
4,185,418	-		Sama_3553	0.39	-2.4
4,185,419	+		Sama_3553	0.39	-0.4
4,185,419	+		Sama_3553	0.39	-1.2
4,185,419	+		Sama_3553	0.39	-2.4
4,185,473	+		Sama_3553	0.44	-2.4
4,185,473	+		Sama_3553	0.44	-2.8
4,185,473	+		Sama_3553	0.44	-2.1
4,185,486	+		Sama_3553	0.45	-1.7
4,185,486	+		Sama_3553	0.45	-2.5
4,185,486	+		Sama_3553	0.45	-2.1
4,185,486	+		Sama_3553	0.45	-3.0
4,185,486	+		Sama_3553	0.45	-1.6
4,185,486	+		Sama_3553	0.45	-1.9
4,185,487	-		Sama_3553	0.45	-2.0
4,185,487	-		Sama_3553	0.45	-2.2
4,185,574	+		Sama_3553	0.53	-2.2
4,185,574	+		Sama_3553	0.53	-3.4
4,185,575	-		Sama_3553	0.53	-1.9
4,185,584	+		Sama_3553	0.53	-2.7
4,185,584	+		Sama_3553	0.53	-2.2
4,185,584	+		Sama_3553	0.53	-3.9
4,185,585	-		Sama_3553	0.54	-3.4
4,185,706	+		Sama_3553	0.64	-0.8
4,185,726	+		Sama_3553	0.66	-2.4
4,185,726	+		Sama_3553	0.66	-2.0
4,185,727	-		Sama_3553	0.66	-2.2
4,185,727	-		Sama_3553	0.66	-1.7
4,185,727	-		Sama_3553	0.66	-0.1
4,185,727	-		Sama_3553	0.66	-0.7
4,185,836	+		Sama_3553	0.76	-1.1
4,185,836	+		Sama_3553	0.76	-2.1
4,185,837	-		Sama_3553	0.76	-2.1
4,185,837	-		Sama_3553	0.76	-2.1
4,185,837	-		Sama_3553	0.76	-2.9
4,185,837	-		Sama_3553	0.76	-1.4
4,185,837	-		Sama_3553	0.76	-2.4
4,185,840	+		Sama_3553	0.76	-2.7
4,185,840	+		Sama_3553	0.76	-1.4
4,185,840	+		Sama_3553	0.76	-1.7
4,185,840	+		Sama_3553	0.76	-2.8
4,185,840	+		Sama_3553	0.76	-2.1
4,185,840	+		Sama_3553	0.76	-3.2
4,185,840	+		Sama_3553	0.76	-2.4
4,185,840	+		Sama_3553	0.76	-2.5
4,185,840	+		Sama_3553	0.76	-2.1
4,185,840	+		Sama_3553	0.76	-2.2
4,185,840	+		Sama_3553	0.76	-2.2
4,185,840	+		Sama_3553	0.76	-0.7
4,185,840	+		Sama_3553	0.76	-1.9
4,185,840	+		Sama_3553	0.76	-1.0
4,185,840	+		Sama_3553	0.76	-2.9
4,185,840	+		Sama_3553	0.76	-1.5
4,185,840	+		Sama_3553	0.76	-2.7
4,185,840	+		Sama_3553	0.76	-2.4
4,185,840	+		Sama_3553	0.76	-3.0
4,185,840	+		Sama_3553	0.76	-1.7
4,185,840	+		Sama_3553	0.76	-0.5
4,185,840	+		Sama_3553	0.76	-2.8
4,185,840	+		Sama_3553	0.76	-1.7
4,185,840	+		Sama_3553	0.76	-1.4
4,185,840	+		Sama_3553	0.76	-3.2
4,185,840	+		Sama_3553	0.76	-2.5
4,185,840	+		Sama_3553	0.76	-2.4
4,185,840	+		Sama_3553	0.76	-0.9
4,185,840	+		Sama_3553	0.76	-1.7
4,185,840	+		Sama_3553	0.76	-3.2
4,185,840	+		Sama_3553	0.76	+0.3
4,185,840	+		Sama_3553	0.76	-3.0
4,185,840	+		Sama_3553	0.76	-0.9
4,185,840	+		Sama_3553	0.76	-2.9
4,185,840	+		Sama_3553	0.76	+0.3
4,185,840	+		Sama_3553	0.76	-1.6
4,185,841	-		Sama_3553	0.76	-1.1
4,185,841	-		Sama_3553	0.76	-1.8
4,185,841	-		Sama_3553	0.76	-1.2
4,185,841	-		Sama_3553	0.76	-1.8
4,185,841	-		Sama_3553	0.76	-2.1
4,185,841	-		Sama_3553	0.76	-2.3
4,185,841	-		Sama_3553	0.76	-2.7
4,185,841	-		Sama_3553	0.76	+0.1
4,185,841	-		Sama_3553	0.76	-2.0
4,185,841	-		Sama_3553	0.76	-2.8
4,185,841	-		Sama_3553	0.76	-1.4
4,185,841	-		Sama_3553	0.76	-3.5
4,185,841	-		Sama_3553	0.76	-1.9
4,185,841	-		Sama_3553	0.76	-0.2
4,185,841	-		Sama_3553	0.76	-0.4
4,185,841	-		Sama_3553	0.76	-1.7
4,185,841	-		Sama_3553	0.76	-3.2
4,185,841	-		Sama_3553	0.76	-2.4
4,185,841	-		Sama_3553	0.76	-1.4
4,185,841	-		Sama_3553	0.76	-2.0
4,185,841	-		Sama_3553	0.76	-2.6
4,185,841	-		Sama_3553	0.76	-2.3
4,185,841	-		Sama_3553	0.76	-3.2
4,185,844	+		Sama_3553	0.76	-1.6
4,185,844	+		Sama_3553	0.76	-2.4
4,185,844	+		Sama_3553	0.76	-2.7
4,185,844	+		Sama_3553	0.76	-3.1
4,185,844	+		Sama_3553	0.76	-1.4
4,185,844	+		Sama_3553	0.76	-1.5
4,185,844	+		Sama_3553	0.76	-2.4
4,185,844	+		Sama_3553	0.76	-1.9
4,185,845	-		Sama_3553	0.76	-1.9
4,185,869	-		Sama_3553	0.79	-2.2
4,185,869	-		Sama_3553	0.79	-2.8
4,185,905	+		Sama_3553	0.82	-2.0
4,185,914	+		Sama_3553	0.82	-2.0
4,186,011	-				-2.7
4,186,037	+				-1.9
4,186,038	-				-2.3
4,186,048	+				-2.4
4,186,048	+				-3.3
4,186,048	+				-2.0
4,186,048	+				-1.6
4,186,048	+				-1.6
4,186,049	-				-2.2
4,186,049	-				-0.4
4,186,111	-				-1.7
4,186,111	-				-1.9
4,186,111	-				-0.1
4,186,111	-				-2.1
4,186,150	+				-1.8
4,186,150	+				-2.1
4,186,151	-				-3.5
4,186,151	-				+0.9
4,186,151	-				+0.6
4,186,151	-				-1.9
4,186,155	+				-1.2
4,186,155	+				-1.8
4,186,155	+				-0.7
4,186,155	+				-0.9
4,186,156	-				-1.0
4,186,170	+				-2.2
4,186,171	-				+0.1
4,186,226	+				-1.4
4,186,226	+				-1.1
4,186,227	-				-3.0
4,186,300	+				-2.0
4,186,349	+				-1.3
4,186,350	-				-1.5
4,186,350	-				-2.5
4,186,384	+				-1.5
4,186,384	+				-1.5
4,186,384	+				-1.9
4,186,384	+				-1.7
4,186,384	+				-2.7
4,186,384	+				-3.0
4,186,385	-				-1.6
4,186,385	-				-3.2
4,186,386	+				-1.4
4,186,386	+				-0.9
4,186,386	+				-1.5
4,186,386	+				-0.9
4,186,386	+				-1.1
4,186,387	-				-1.7
4,186,387	-				+0.2
4,186,387	-				-2.9
4,186,387	-				-0.1
4,186,387	-				-2.5
4,186,438	-				-1.7
4,186,469	+				-1.7
4,186,469	+				-1.9
4,186,469	+				-2.2
4,186,520	+		Sama_3554	0.12	-2.0
4,186,520	+		Sama_3554	0.12	-1.2
4,186,520	+		Sama_3554	0.12	-2.1
4,186,521	-		Sama_3554	0.12	-1.4
4,186,521	-		Sama_3554	0.12	-3.0
4,186,572	-		Sama_3554	0.13	-1.4
4,186,572	-		Sama_3554	0.13	-1.1
4,186,624	+		Sama_3554	0.15	-2.0
4,186,624	+		Sama_3554	0.15	-2.4
4,186,624	+		Sama_3554	0.15	-1.8
4,186,624	+		Sama_3554	0.15	-1.9
4,186,625	-		Sama_3554	0.15	-2.2
4,186,625	-		Sama_3554	0.15	-0.2
4,186,625	-		Sama_3554	0.15	-0.7
4,186,625	-		Sama_3554	0.15	+0.6
4,186,652	+		Sama_3554	0.16	-3.8
4,186,681	-		Sama_3554	0.17	-2.7
4,186,699	+		Sama_3554	0.17	-2.7
4,186,699	+		Sama_3554	0.17	-3.2
4,186,699	+		Sama_3554	0.17	-0.9
4,186,699	+		Sama_3554	0.17	-1.8
4,186,699	+		Sama_3554	0.17	+0.2
4,186,699	+		Sama_3554	0.17	-2.5
4,186,699	+		Sama_3554	0.17	-1.8
4,186,699	+		Sama_3554	0.17	-1.1
4,186,699	+		Sama_3554	0.17	-1.5
4,186,700	-		Sama_3554	0.17	-1.9
4,186,700	-		Sama_3554	0.17	-1.5
4,186,700	-		Sama_3554	0.17	-2.8
4,186,700	-		Sama_3554	0.17	-0.7
4,186,712	+		Sama_3554	0.18	-0.7
4,186,713	-		Sama_3554	0.18	-4.9
4,186,718	+		Sama_3554	0.18	-1.2
4,186,718	+		Sama_3554	0.18	-0.5
4,186,719	-		Sama_3554	0.18	-1.9
4,186,741	+		Sama_3554	0.19	-2.0
4,186,741	+		Sama_3554	0.19	-1.5
4,186,741	+		Sama_3554	0.19	-0.7
4,186,742	-		Sama_3554	0.19	-2.5
4,186,742	-		Sama_3554	0.19	-0.1
4,186,742	-		Sama_3554	0.19	-2.2
4,186,743	+		Sama_3554	0.19	-2.4
4,186,743	+		Sama_3554	0.19	-1.7
4,186,743	+		Sama_3554	0.19	-1.4
4,186,743	+		Sama_3554	0.19	-3.2
4,186,743	+		Sama_3554	0.19	-1.8
4,186,743	+		Sama_3554	0.19	-1.2
4,186,743	+		Sama_3554	0.19	-2.3
4,186,743	+		Sama_3554	0.19	-1.4
4,186,743	+		Sama_3554	0.19	-1.9
4,186,743	+		Sama_3554	0.19	-0.7
4,186,743	+		Sama_3554	0.19	-1.1
4,186,743	+		Sama_3554	0.19	-3.5
4,186,743	+		Sama_3554	0.19	-1.9
4,186,743	+		Sama_3554	0.19	-2.3
4,186,743	+		Sama_3554	0.19	-1.3
4,186,744	-		Sama_3554	0.19	-0.8
4,186,744	-		Sama_3554	0.19	-1.1
4,186,744	-		Sama_3554	0.19	-0.4
4,186,744	-		Sama_3554	0.19	-3.5
4,186,856	+		Sama_3554	0.22	-2.1
4,186,978	+		Sama_3554	0.26	-3.9
4,186,978	+		Sama_3554	0.26	-2.2
4,186,978	+		Sama_3554	0.26	-1.9
4,186,978	+		Sama_3554	0.26	-1.6
4,186,978	+		Sama_3554	0.26	-1.5
4,186,978	+		Sama_3554	0.26	-3.8
4,186,978	+		Sama_3554	0.26	-1.9
4,186,978	+		Sama_3554	0.26	-1.4
4,186,978	+		Sama_3554	0.26	-1.7
4,186,979	-		Sama_3554	0.26	-1.1
4,186,979	-		Sama_3554	0.26	-2.5
4,186,996	+		Sama_3554	0.27	+0.3
4,186,996	+		Sama_3554	0.27	-1.4
4,186,996	+		Sama_3554	0.27	-1.4
4,186,997	-		Sama_3554	0.27	-1.6
4,187,059	-		Sama_3554	0.29	-1.2