Strain Fitness in Shewanella amazonensis SB2B around Sama_3397

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
4,024,121	+		Sama_3396	0.28	+1.3
4,024,121	+		Sama_3396	0.28	-2.6
4,024,121	+		Sama_3396	0.28	-0.6
4,024,121	+		Sama_3396	0.28	-1.4
4,024,122	-		Sama_3396	0.28	+0.4
4,024,122	-		Sama_3396	0.28	-0.5
4,024,122	-		Sama_3396	0.28	-0.9
4,024,169	+		Sama_3396	0.32	-0.1
4,024,170	-		Sama_3396	0.32	+0.2
4,024,170	-		Sama_3396	0.32	+0.6
4,024,170	-		Sama_3396	0.32	+0.5
4,024,220	-		Sama_3396	0.37	-0.1
4,024,226	+		Sama_3396	0.37	+1.9
4,024,226	+		Sama_3396	0.37	-0.2
4,024,226	+		Sama_3396	0.37	-0.4
4,024,226	+		Sama_3396	0.37	+0.2
4,024,227	-		Sama_3396	0.37	-0.7
4,024,282	+		Sama_3396	0.42	+1.0
4,024,282	+		Sama_3396	0.42	-0.3
4,024,282	+		Sama_3396	0.42	-1.1
4,024,282	+		Sama_3396	0.42	-0.3
4,024,282	+		Sama_3396	0.42	-0.8
4,024,283	-		Sama_3396	0.42	+0.4
4,024,283	-		Sama_3396	0.42	+0.1
4,024,283	-		Sama_3396	0.42	+0.8
4,024,283	-		Sama_3396	0.42	+0.3
4,024,324	+		Sama_3396	0.46	-0.7
4,024,324	+		Sama_3396	0.46	+0.4
4,024,324	+		Sama_3396	0.46	-0.7
4,024,324	+		Sama_3396	0.46	+0.3
4,024,325	-		Sama_3396	0.46	-1.9
4,024,347	+		Sama_3396	0.48	+0.0
4,024,348	-		Sama_3396	0.48	+0.4
4,024,348	-		Sama_3396	0.48	-1.5
4,024,348	-		Sama_3396	0.48	-0.9
4,024,365	-		Sama_3396	0.49	-1.1
4,024,391	+		Sama_3396	0.52	-0.1
4,024,391	+		Sama_3396	0.52	-0.7
4,024,391	+		Sama_3396	0.52	-1.5
4,024,391	+		Sama_3396	0.52	-1.4
4,024,392	-		Sama_3396	0.52	+0.3
4,024,435	+		Sama_3396	0.56	+0.9
4,024,435	+		Sama_3396	0.56	+0.9
4,024,436	-		Sama_3396	0.56	-0.7
4,024,436	-		Sama_3396	0.56	-0.7
4,024,468	+		Sama_3396	0.59	+0.2
4,024,468	+		Sama_3396	0.59	+1.2
4,024,468	+		Sama_3396	0.59	+0.2
4,024,468	+		Sama_3396	0.59	+0.7
4,024,469	-		Sama_3396	0.59	-0.7
4,024,469	-		Sama_3396	0.59	-1.6
4,024,485	+		Sama_3396	0.60	+0.3
4,024,485	+		Sama_3396	0.60	+1.0
4,024,485	+		Sama_3396	0.60	-0.8
4,024,485	+		Sama_3396	0.60	+0.7
4,024,485	+		Sama_3396	0.60	-0.7
4,024,485	+		Sama_3396	0.60	-1.9
4,024,486	-		Sama_3396	0.60	+1.0
4,024,486	-		Sama_3396	0.60	+0.4
4,024,486	-		Sama_3396	0.60	-0.8
4,024,486	-		Sama_3396	0.60	+0.0
4,024,486	-		Sama_3396	0.60	-1.1
4,024,487	+		Sama_3396	0.60	-2.3
4,024,487	+		Sama_3396	0.60	-0.3
4,024,487	+		Sama_3396	0.60	+1.5
4,024,487	+		Sama_3396	0.60	+0.0
4,024,487	+		Sama_3396	0.60	+0.0
4,024,487	+		Sama_3396	0.60	+0.8
4,024,487	+		Sama_3396	0.60	+0.0
4,024,487	+		Sama_3396	0.60	+0.9
4,024,487	+		Sama_3396	0.60	-0.5
4,024,487	+		Sama_3396	0.60	-0.2
4,024,488	-		Sama_3396	0.60	+0.7
4,024,488	-		Sama_3396	0.60	-0.1
4,024,488	-		Sama_3396	0.60	-0.0
4,024,488	-		Sama_3396	0.60	+0.5
4,024,488	-		Sama_3396	0.60	+1.2
4,024,488	-		Sama_3396	0.60	+0.0
4,024,488	-		Sama_3396	0.60	+0.4
4,024,488	-		Sama_3396	0.60	-0.9
4,024,489	-		Sama_3396	0.60	+0.5
4,024,559	-		Sama_3396	0.67	-0.0
4,024,575	+		Sama_3396	0.68	-0.1
4,024,575	+		Sama_3396	0.68	+0.1
4,024,576	-		Sama_3396	0.68	-0.1
4,024,576	-		Sama_3396	0.68	+1.4
4,024,576	-		Sama_3396	0.68	-0.6
4,024,588	+		Sama_3396	0.69	-1.1
4,024,589	-		Sama_3396	0.69	-0.8
4,024,602	+		Sama_3396	0.70	-0.0
4,024,603	-		Sama_3396	0.70	-0.4
4,024,616	+		Sama_3396	0.72	+0.5
4,024,616	+		Sama_3396	0.72	-1.3
4,024,646	+		Sama_3396	0.74	+0.1
4,024,647	-		Sama_3396	0.74	-0.4
4,024,660	+		Sama_3396	0.76	-0.8
4,024,660	+		Sama_3396	0.76	-1.4
4,024,660	+		Sama_3396	0.76	+1.5
4,024,661	-		Sama_3396	0.76	-2.7
4,024,704	-		Sama_3396	0.79	+0.9
4,024,729	-		Sama_3396	0.82	-0.5
4,024,729	-		Sama_3396	0.82	+0.9
4,024,729	-		Sama_3396	0.82	-0.6
4,024,729	-		Sama_3396	0.82	-0.3
4,024,762	+		Sama_3396	0.85	+0.2
4,024,762	+		Sama_3396	0.85	-0.5
4,024,763	-		Sama_3396	0.85	-0.2
4,024,771	+		Sama_3396	0.85	-0.3
4,024,771	+		Sama_3396	0.85	-0.9
4,024,772	-		Sama_3396	0.85	+0.5
4,024,803	+		Sama_3396	0.88	+0.2
4,024,803	+		Sama_3396	0.88	-1.0
4,024,803	+		Sama_3396	0.88	-0.0
4,024,804	-		Sama_3396	0.88	-0.7
4,024,804	-		Sama_3396	0.88	-1.7
4,024,804	-		Sama_3396	0.88	-0.2
4,024,804	-		Sama_3396	0.88	+0.1
4,024,804	-		Sama_3396	0.88	-0.3
4,024,804	-		Sama_3396	0.88	-1.1
4,024,804	-		Sama_3396	0.88	+0.4
4,024,817	+		Sama_3396	0.89	+0.5
4,024,818	-		Sama_3396	0.89	+0.2
4,024,819	+		Sama_3396	0.90	+0.9
4,024,820	-		Sama_3396	0.90	-0.0
4,024,820	-		Sama_3396	0.90	-0.8
4,024,885	+				-0.5
4,024,886	-				+0.2
4,024,886	-				+0.0
4,024,886	-				-0.5
4,024,915	+				-1.8
4,024,916	-				+1.2
4,024,936	+				-0.4
4,024,936	+				+0.9
4,024,936	+				-3.0
4,024,936	+				-0.1
4,024,936	+				-0.7
4,024,936	+				+0.7
4,024,936	+				+0.3
4,024,936	+				+1.3
4,024,936	+				+0.1
4,024,936	+				-0.4
4,024,936	+				-0.8
4,024,936	+				-0.1
4,024,936	+				+0.4
4,024,936	+				-0.4
4,024,936	+				+0.7
4,024,936	+				-0.2
4,024,936	+				+0.9
4,024,936	+				-0.9
4,024,937	-				+0.3
4,024,937	-				+1.9
4,024,937	-				-0.2
4,024,937	-				+0.6
4,024,937	-				-0.6
4,024,937	-				+0.5
4,024,937	-				-1.4
4,024,937	-				-1.9
4,024,938	+				-0.3
4,024,938	+				-0.0
4,024,938	+				+0.1
4,024,938	+				+0.4
4,024,938	+				-2.3
4,024,938	+				+0.2
4,024,938	+				+0.9
4,024,939	-				+0.1
4,024,939	-				-0.5
4,024,939	-				+0.4
4,024,939	-				+0.6
4,024,939	-				-0.8
4,024,939	-				+1.5
4,024,939	-				+0.0
4,024,939	-				-0.7
4,024,939	-				-0.7
4,024,939	-				+0.9
4,024,950	+				-2.0
4,024,950	+				-0.2
4,024,951	-				-0.1
4,024,970	+				+0.4
4,024,970	+				+1.1
4,024,970	+				+0.2
4,024,970	+				-1.3
4,024,970	+				-1.3
4,024,970	+				-0.6
4,024,970	+				+0.3
4,024,970	+				+1.9
4,024,970	+				+1.6
4,024,970	+				+0.5
4,024,970	+				+0.1
4,024,970	+				-0.4
4,024,971	-				+0.6
4,024,971	-				+0.9
4,024,971	-				+0.5
4,024,971	-				-0.5
4,024,971	-				+0.2
4,024,971	-				-0.7
4,024,971	-				-0.3
4,024,971	-				+1.5
4,024,971	-				-0.3
4,024,971	-				+0.2
4,024,971	-				+0.4
4,024,974	+				-0.3
4,024,974	+				+0.1
4,024,974	+				-0.2
4,024,974	+				+0.1
4,024,974	+				+0.7
4,024,975	-				-0.5
4,024,975	-				+0.6
4,024,975	-				+0.3
4,024,975	-				+1.9
4,024,975	-				+1.3
4,024,975	-				-1.7
4,024,976	+				-2.1
4,024,976	+				-0.3
4,024,976	+				-0.5
4,024,977	-				+0.1
4,024,977	-				+0.0
4,024,991	-				+0.2
4,025,034	+				-0.1
4,025,110	+				+0.5
4,025,110	+				-0.1
4,025,110	+				+0.3
4,025,110	+				+0.3
4,025,110	+				+0.0
4,025,111	-				-0.3
4,025,111	-				-1.1
4,025,111	-				+1.0
4,025,111	-				+0.3
4,025,251	+		Sama_3397	0.48	-1.1
4,025,251	+		Sama_3397	0.48	+0.5
4,025,251	+		Sama_3397	0.48	-1.8
4,025,252	-		Sama_3397	0.48	-1.1
4,025,307	-		Sama_3397	0.65	-0.4
4,025,307	-		Sama_3397	0.65	-0.7
4,025,307	-		Sama_3397	0.65	-0.1
4,025,321	-		Sama_3397	0.70	+1.9
4,025,400	+				+1.0
4,025,401	-				+0.3
4,025,414	+				-0.3
4,025,493	+				-0.8
4,025,493	+				+0.9
4,025,493	+				-2.4
4,025,494	-				+0.9
4,025,494	-				-0.5
4,025,494	-				+0.9
4,025,498	+				+0.3
4,025,498	+				-0.7
4,025,498	+				+1.1
4,025,498	+				+0.0
4,025,498	+				-0.6
4,025,499	-				+0.0
4,025,499	-				-0.8
4,025,499	-				-1.5
4,025,507	+				+0.1
4,025,508	-				+0.6
4,025,624	+				+1.2
4,025,705	+		Sama_3398	0.14	+0.6
4,025,705	+		Sama_3398	0.14	+0.3
4,025,712	+		Sama_3398	0.15	+2.8
4,025,744	-		Sama_3398	0.20	-0.6
4,025,756	+		Sama_3398	0.23	-0.7
4,025,791	+		Sama_3398	0.28	-0.5
4,025,792	-		Sama_3398	0.29	+0.7
4,025,792	-		Sama_3398	0.29	+0.3
4,025,835	+		Sama_3398	0.36	+0.9
4,025,835	+		Sama_3398	0.36	+0.2
4,025,836	-		Sama_3398	0.36	-1.7
4,025,836	-		Sama_3398	0.36	+0.1
4,025,836	-		Sama_3398	0.36	+1.5
4,025,836	-		Sama_3398	0.36	-0.7
4,025,861	+		Sama_3398	0.40	+0.0
4,025,862	-		Sama_3398	0.40	-1.6
4,025,862	-		Sama_3398	0.40	-0.2
4,025,865	+		Sama_3398	0.41	-0.2
4,025,865	+		Sama_3398	0.41	-1.1
4,025,865	+		Sama_3398	0.41	-0.3
4,025,865	+		Sama_3398	0.41	-1.1
4,025,865	+		Sama_3398	0.41	+0.5
4,025,866	-		Sama_3398	0.41	+0.5
4,025,897	-		Sama_3398	0.46	-0.2
4,025,922	+		Sama_3398	0.51	-0.3
4,025,922	+		Sama_3398	0.51	+0.3
4,025,933	+		Sama_3398	0.52	+0.6
4,025,933	+		Sama_3398	0.52	-1.0
4,025,933	+		Sama_3398	0.52	-0.2
4,025,933	+		Sama_3398	0.52	-1.1
4,025,934	-		Sama_3398	0.53	-0.5
4,025,934	-		Sama_3398	0.53	-0.1
4,026,025	+		Sama_3398	0.68	+0.6
4,026,026	-		Sama_3398	0.68	+0.2
4,026,026	-		Sama_3398	0.68	+0.1
4,026,111	+		Sama_3398	0.83	-0.9
4,026,111	+		Sama_3398	0.83	-1.4
4,026,199	+				+1.2
4,026,199	+				-1.0
4,026,202	+				+0.3
4,026,202	+				+0.7
4,026,202	+				-0.5
4,026,203	-				-0.9
4,026,203	-				-0.1
4,026,203	-				-0.8
4,026,203	-				-0.4
4,026,203	-				+0.5
4,026,213	+				-0.4
4,026,213	+				-0.4
4,026,213	+				-0.2
4,026,214	-				-0.1
4,026,214	-				-1.7
4,026,214	-				+1.9
4,026,214	-				-0.7
4,026,214	-				-0.3
4,026,214	-				+0.9
4,026,214	-				+0.2
4,026,214	-				+0.2
4,026,214	-				+0.5
4,026,214	-				-0.7
4,026,214	-				-0.4
4,026,214	-				-0.9
4,026,236	+				+0.0
4,026,251	-				+0.4
4,026,269	+				+1.2
4,026,269	+				-0.3
4,026,272	+				+1.3
4,026,273	-				+0.1
4,026,309	+				+0.4
4,026,310	-				+0.6
4,026,385	-				+0.4
4,026,385	-				-0.9
4,026,385	-				-0.4
4,026,385	-				+0.3
4,026,385	-				-0.4
4,026,394	-				-0.9
4,026,394	-				+0.4
4,026,394	-				+0.2