Strain Fitness in Shewanella amazonensis SB2B around Sama_3224

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
3,816,662	-		Sama_3223	0.39	+0.5
3,816,670	+		Sama_3223	0.39	+1.6
3,816,670	+		Sama_3223	0.39	-0.7
3,816,671	-		Sama_3223	0.39	-0.5
3,816,703	+		Sama_3223	0.41	+0.0
3,816,704	-		Sama_3223	0.42	-0.7
3,816,704	-		Sama_3223	0.42	-0.4
3,816,704	-		Sama_3223	0.42	-0.3
3,816,704	-		Sama_3223	0.42	+1.5
3,816,752	+		Sama_3223	0.45	-0.4
3,816,752	+		Sama_3223	0.45	-0.6
3,816,753	-		Sama_3223	0.45	+0.2
3,816,753	-		Sama_3223	0.45	-0.9
3,816,753	-		Sama_3223	0.45	+0.8
3,816,753	-		Sama_3223	0.45	-0.0
3,816,757	+		Sama_3223	0.45	-0.8
3,816,757	+		Sama_3223	0.45	+0.8
3,816,757	+		Sama_3223	0.45	+0.5
3,816,757	+		Sama_3223	0.45	+0.6
3,816,758	-		Sama_3223	0.45	-1.9
3,816,758	-		Sama_3223	0.45	+0.5
3,816,758	-		Sama_3223	0.45	-0.5
3,816,820	-		Sama_3223	0.50	-0.2
3,816,864	+		Sama_3223	0.53	+1.1
3,816,864	+		Sama_3223	0.53	-0.0
3,816,864	+		Sama_3223	0.53	+0.0
3,816,865	-		Sama_3223	0.53	+0.4
3,816,865	-		Sama_3223	0.53	-0.2
3,816,870	+		Sama_3223	0.53	-0.4
3,816,870	+		Sama_3223	0.53	-0.1
3,816,871	-		Sama_3223	0.53	-0.4
3,816,871	-		Sama_3223	0.53	+1.1
3,816,871	-		Sama_3223	0.53	+0.3
3,816,871	-		Sama_3223	0.53	+0.8
3,816,871	-		Sama_3223	0.53	-0.2
3,816,936	-		Sama_3223	0.58	-1.2
3,816,945	-		Sama_3223	0.59	-0.1
3,816,945	-		Sama_3223	0.59	-0.4
3,816,967	-		Sama_3223	0.60	-0.4
3,817,012	+		Sama_3223	0.63	+0.1
3,817,012	+		Sama_3223	0.63	+0.0
3,817,013	-		Sama_3223	0.63	-0.2
3,817,036	+		Sama_3223	0.65	+0.0
3,817,036	+		Sama_3223	0.65	+0.6
3,817,052	+		Sama_3223	0.66	+0.3
3,817,052	+		Sama_3223	0.66	+0.3
3,817,053	-		Sama_3223	0.66	-1.8
3,817,094	+		Sama_3223	0.69	-0.5
3,817,094	+		Sama_3223	0.69	+0.6
3,817,174	+		Sama_3223	0.75	+0.0
3,817,175	-		Sama_3223	0.75	-0.5
3,817,175	-		Sama_3223	0.75	-1.2
3,817,175	-		Sama_3223	0.75	-1.4
3,817,175	-		Sama_3223	0.75	-0.7
3,817,263	+		Sama_3223	0.81	+0.6
3,817,263	+		Sama_3223	0.81	+0.5
3,817,264	-		Sama_3223	0.81	-2.3
3,817,267	+		Sama_3223	0.81	+0.5
3,817,267	+		Sama_3223	0.81	-0.4
3,817,267	+		Sama_3223	0.81	-0.4
3,817,267	+		Sama_3223	0.81	+1.1
3,817,267	+		Sama_3223	0.81	-0.8
3,817,267	+		Sama_3223	0.81	-1.5
3,817,267	+		Sama_3223	0.81	-0.2
3,817,267	+		Sama_3223	0.81	+0.4
3,817,267	+		Sama_3223	0.81	+1.2
3,817,267	+		Sama_3223	0.81	-0.4
3,817,268	-		Sama_3223	0.82	-0.9
3,817,268	-		Sama_3223	0.82	-1.3
3,817,268	-		Sama_3223	0.82	+1.3
3,817,268	-		Sama_3223	0.82	+0.4
3,817,268	-		Sama_3223	0.82	-0.8
3,817,268	-		Sama_3223	0.82	+0.7
3,817,268	-		Sama_3223	0.82	-0.3
3,817,268	-		Sama_3223	0.82	-1.0
3,817,268	-		Sama_3223	0.82	-2.3
3,817,268	-		Sama_3223	0.82	+0.4
3,817,289	+		Sama_3223	0.83	+0.5
3,817,324	+		Sama_3223	0.86	+0.4
3,817,324	+		Sama_3223	0.86	-0.3
3,817,324	+		Sama_3223	0.86	-0.1
3,817,325	-		Sama_3223	0.86	-0.2
3,817,325	-		Sama_3223	0.86	-0.4
3,817,336	-		Sama_3223	0.86	-2.0
3,817,366	+		Sama_3223	0.89	+0.2
3,817,366	+		Sama_3223	0.89	-1.0
3,817,366	+		Sama_3223	0.89	+1.0
3,817,366	+		Sama_3223	0.89	-1.9
3,817,366	+		Sama_3223	0.89	-0.5
3,817,366	+		Sama_3223	0.89	+0.6
3,817,366	+		Sama_3223	0.89	-0.3
3,817,366	+		Sama_3223	0.89	-0.2
3,817,367	-		Sama_3223	0.89	+0.7
3,817,367	-		Sama_3223	0.89	-0.4
3,817,367	-		Sama_3223	0.89	+0.2
3,817,367	-		Sama_3223	0.89	-0.9
3,817,367	-		Sama_3223	0.89	+0.0
3,817,367	-		Sama_3223	0.89	+0.6
3,817,367	-		Sama_3223	0.89	+0.5
3,817,367	-		Sama_3223	0.89	+0.6
3,817,447	+				-0.2
3,817,448	-				-0.6
3,817,448	-				-0.9
3,817,448	-				-1.1
3,817,544	+				+0.8
3,817,544	+				-2.0
3,817,544	+				+0.2
3,817,544	+				-0.1
3,817,545	-				+0.8
3,817,545	-				-1.1
3,817,545	-				-0.2
3,817,545	-				-1.2
3,817,545	-				-0.2
3,817,545	-				+1.1
3,817,555	+				-0.5
3,817,555	+				-0.9
3,817,556	-				-0.3
3,817,563	+				-1.1
3,817,563	+				-0.5
3,817,563	+				+0.6
3,817,563	+				+0.0
3,817,563	+				-0.2
3,817,563	+				-1.5
3,817,563	+				+0.2
3,817,563	+				+0.4
3,817,564	-				-0.5
3,817,564	-				+0.3
3,817,564	-				-0.1
3,817,564	-				-0.7
3,817,564	-				-0.1
3,817,564	-				+0.1
3,817,564	-				-0.5
3,817,564	-				-0.2
3,817,564	-				+0.1
3,817,564	-				+0.2
3,817,573	+				-0.9
3,817,610	+				-0.3
3,817,616	-				+0.2
3,817,627	+				-0.8
3,817,642	+				+0.4
3,817,643	-				+0.2
3,817,643	-				+0.2
3,817,752	+	prmA	Sama_3224	0.12	-0.2
3,817,752	+	prmA	Sama_3224	0.12	-0.7
3,817,752	+	prmA	Sama_3224	0.12	-0.1
3,817,752	+	prmA	Sama_3224	0.12	+1.4
3,817,753	-	prmA	Sama_3224	0.12	+0.2
3,817,856	+	prmA	Sama_3224	0.23	+0.6
3,817,900	+	prmA	Sama_3224	0.28	-0.1
3,817,900	+	prmA	Sama_3224	0.28	+0.2
3,817,901	-	prmA	Sama_3224	0.28	+0.1
3,817,901	-	prmA	Sama_3224	0.28	+0.5
3,817,901	-	prmA	Sama_3224	0.28	-1.0
3,817,954	+	prmA	Sama_3224	0.34	-0.2
3,817,954	+	prmA	Sama_3224	0.34	-0.3
3,817,954	+	prmA	Sama_3224	0.34	+0.7
3,817,954	+	prmA	Sama_3224	0.34	-0.3
3,817,954	+	prmA	Sama_3224	0.34	-0.8
3,817,954	+	prmA	Sama_3224	0.34	-0.6
3,817,954	+	prmA	Sama_3224	0.34	+0.2
3,817,954	+	prmA	Sama_3224	0.34	+1.0
3,817,954	+	prmA	Sama_3224	0.34	-0.1
3,817,955	-	prmA	Sama_3224	0.35	+0.4
3,817,955	-	prmA	Sama_3224	0.35	+0.3
3,817,955	-	prmA	Sama_3224	0.35	-0.2
3,817,955	-	prmA	Sama_3224	0.35	+0.2
3,817,955	-	prmA	Sama_3224	0.35	+0.1
3,817,955	-	prmA	Sama_3224	0.35	-0.2
3,817,955	-	prmA	Sama_3224	0.35	+0.6
3,817,955	-	prmA	Sama_3224	0.35	+0.6
3,818,067	+	prmA	Sama_3224	0.47	+0.4
3,818,134	-	prmA	Sama_3224	0.55	-1.1
3,818,178	+	prmA	Sama_3224	0.60	+0.6
3,818,178	+	prmA	Sama_3224	0.60	-0.5
3,818,219	-	prmA	Sama_3224	0.64	+0.8
3,818,256	+	prmA	Sama_3224	0.68	-1.5
3,818,256	+	prmA	Sama_3224	0.68	-0.0
3,818,264	+	prmA	Sama_3224	0.69	-0.6
3,818,264	+	prmA	Sama_3224	0.69	+1.0
3,818,264	+	prmA	Sama_3224	0.69	+1.5
3,818,265	-	prmA	Sama_3224	0.69	+0.1
3,818,284	+	prmA	Sama_3224	0.72	-0.4
3,818,284	+	prmA	Sama_3224	0.72	-0.5
3,818,284	+	prmA	Sama_3224	0.72	-0.6
3,818,285	-	prmA	Sama_3224	0.72	-0.1
3,818,285	-	prmA	Sama_3224	0.72	+0.4
3,818,285	-	prmA	Sama_3224	0.72	-0.0
3,818,285	-	prmA	Sama_3224	0.72	+1.1
3,818,285	-	prmA	Sama_3224	0.72	+0.6
3,818,337	+	prmA	Sama_3224	0.78	+0.5
3,818,373	+	prmA	Sama_3224	0.82	-0.8
3,818,374	-	prmA	Sama_3224	0.82	-0.6
3,818,405	+	prmA	Sama_3224	0.85	+0.3
3,818,456	-				+1.0
3,818,519	+				-0.6
3,818,534	-				+1.2
3,818,578	-				-0.3
3,818,612	+				-0.8
3,818,612	+				+0.7
3,818,612	+				-0.2
3,818,613	-				-0.8
3,818,613	-				+0.3
3,818,643	+				+1.0
3,818,643	+				+2.0
3,818,644	-				+1.3
3,818,644	-				+1.2
3,818,646	+				+1.4
3,818,646	+				+1.2
3,818,646	+				+0.0
3,818,646	+				+1.5
3,818,647	-				+1.2
3,818,647	-				+0.4
3,818,698	+				+0.9
3,818,698	+				+0.7
3,818,698	+				+0.6
3,818,699	-				+0.2
3,818,776	+				+1.1
3,818,777	-				+1.8
3,818,777	-				-1.2
3,819,000	+		Sama_3225	0.33	+1.9
3,819,068	+		Sama_3225	0.40	+0.0
3,819,211	+		Sama_3225	0.54	+1.8
3,819,211	+		Sama_3225	0.54	+2.1
3,819,211	+		Sama_3225	0.54	+2.1
3,819,229	+		Sama_3225	0.56	+1.3
3,819,325	+		Sama_3225	0.66	+0.6
3,819,325	+		Sama_3225	0.66	+1.2
3,819,325	+		Sama_3225	0.66	+1.8
3,819,350	+		Sama_3225	0.69	+1.0
3,819,350	+		Sama_3225	0.69	+1.8
3,819,350	+		Sama_3225	0.69	+1.7
3,819,481	+		Sama_3225	0.82	+1.6
3,819,481	+		Sama_3225	0.82	+1.7
3,819,490	+		Sama_3225	0.83	+0.6
3,819,490	+		Sama_3225	0.83	+1.1
3,819,528	+		Sama_3225	0.87	+1.0