Strain Fitness in Shewanella amazonensis SB2B around Sama_2475

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,977,300	+				+0.5
2,977,365	+				+0.1
2,977,366	-				-0.0
2,977,387	+		Sama_2474	0.11	+0.6
2,977,436	+		Sama_2474	0.20	+0.1
2,977,437	-		Sama_2474	0.20	+0.9
2,977,437	-		Sama_2474	0.20	+0.9
2,977,437	-		Sama_2474	0.20	-0.1
2,977,437	-		Sama_2474	0.20	+0.2
2,977,437	-		Sama_2474	0.20	-0.2
2,977,443	-		Sama_2474	0.21	+1.1
2,977,443	-		Sama_2474	0.21	+1.0
2,977,481	+		Sama_2474	0.28	-0.2
2,977,482	-		Sama_2474	0.29	+0.2
2,977,482	-		Sama_2474	0.29	+0.5
2,977,536	+		Sama_2474	0.38	+0.6
2,977,537	-		Sama_2474	0.39	-0.1
2,977,550	+		Sama_2474	0.41	-0.1
2,977,550	+		Sama_2474	0.41	+0.6
2,977,550	+		Sama_2474	0.41	+1.8
2,977,550	+		Sama_2474	0.41	-1.1
2,977,551	-		Sama_2474	0.41	-2.0
2,977,551	-		Sama_2474	0.41	-1.9
2,977,551	-		Sama_2474	0.41	+0.8
2,977,551	-		Sama_2474	0.41	+0.5
2,977,551	-		Sama_2474	0.41	+0.1
2,977,551	-		Sama_2474	0.41	+0.3
2,977,551	-		Sama_2474	0.41	+0.2
2,977,551	-		Sama_2474	0.41	-0.1
2,977,551	-		Sama_2474	0.41	+0.2
2,977,559	+		Sama_2474	0.43	-0.2
2,977,559	+		Sama_2474	0.43	-0.5
2,977,559	+		Sama_2474	0.43	-1.4
2,977,560	-		Sama_2474	0.43	+0.8
2,977,560	-		Sama_2474	0.43	-0.7
2,977,560	-		Sama_2474	0.43	+0.6
2,977,560	-		Sama_2474	0.43	+0.6
2,977,560	-		Sama_2474	0.43	-0.4
2,977,564	+		Sama_2474	0.44	+1.1
2,977,565	-		Sama_2474	0.44	+0.3
2,977,565	-		Sama_2474	0.44	-0.7
2,977,565	-		Sama_2474	0.44	-0.2
2,977,649	+		Sama_2474	0.59	-1.1
2,977,650	-		Sama_2474	0.59	-1.2
2,977,716	+		Sama_2474	0.72	-0.0
2,977,717	-		Sama_2474	0.72	+0.5
2,977,780	-		Sama_2474	0.83	+2.2
2,977,799	+		Sama_2474	0.87	-0.8
2,977,909	+				+0.6
2,977,914	+				-1.5
2,977,915	-				+2.0
2,977,934	+				+1.6
2,977,934	+				+0.2
2,977,934	+				+0.6
2,977,935	-				-0.9
2,977,935	-				+1.1
2,977,935	-				-0.6
2,977,935	-				+1.5
2,977,935	-				+0.2
2,977,991	+				+0.3
2,977,991	+				+0.8
2,977,992	-				+0.1
2,977,992	-				-1.0
2,977,992	-				-0.1
2,977,992	-				-0.2
2,978,041	+				+0.6
2,978,041	+				-1.9
2,978,041	+				+1.1
2,978,042	-				-0.3
2,978,042	-				+1.3
2,978,042	-				-1.2
2,978,042	-				+0.0
2,978,042	-				+0.1
2,978,114	+				-1.1
2,978,115	-				-0.9
2,978,115	-				+0.6
2,978,441	+		Sama_2475	0.33	-0.6
2,978,441	+		Sama_2475	0.33	+0.9
2,978,441	+		Sama_2475	0.33	+0.4
2,978,441	+		Sama_2475	0.33	+0.5
2,978,442	-		Sama_2475	0.33	+0.6
2,978,465	+		Sama_2475	0.35	-0.9
2,978,465	+		Sama_2475	0.35	-0.1
2,978,465	+		Sama_2475	0.35	-0.2
2,978,466	-		Sama_2475	0.36	+0.4
2,978,466	-		Sama_2475	0.36	-0.1
2,978,510	+		Sama_2475	0.40	+0.6
2,978,510	+		Sama_2475	0.40	+0.3
2,978,511	-		Sama_2475	0.40	-0.8
2,978,511	-		Sama_2475	0.40	+0.5
2,978,511	-		Sama_2475	0.40	+1.8
2,978,720	+		Sama_2475	0.58	+0.6
2,978,721	-		Sama_2475	0.58	-0.4
2,978,778	-		Sama_2475	0.64	-0.1
2,978,783	+		Sama_2475	0.64	+0.2
2,978,784	-		Sama_2475	0.64	+0.1
2,978,789	+		Sama_2475	0.65	-0.4
2,978,801	+		Sama_2475	0.66	+1.1
2,978,802	-		Sama_2475	0.66	+0.4
2,978,802	-		Sama_2475	0.66	-0.2
2,978,807	+		Sama_2475	0.66	+0.4
2,978,807	+		Sama_2475	0.66	+0.5
2,978,807	+		Sama_2475	0.66	-0.5
2,978,807	+		Sama_2475	0.66	+0.4
2,978,808	-		Sama_2475	0.66	+0.2
2,978,808	-		Sama_2475	0.66	-0.6
2,978,819	+		Sama_2475	0.67	+1.1
2,978,820	-		Sama_2475	0.67	-2.2
2,978,838	-		Sama_2475	0.69	+0.8
2,978,898	+		Sama_2475	0.74	+0.1
2,978,898	+		Sama_2475	0.74	+1.0
2,978,898	+		Sama_2475	0.74	+0.4
2,978,899	-		Sama_2475	0.74	+0.9
2,978,899	-		Sama_2475	0.74	-0.5
2,978,975	+		Sama_2475	0.81	-1.2
2,979,174	+				-0.4
2,979,174	+				-0.2
2,979,174	+				-1.2
2,979,174	+				+1.3
2,979,174	+				+3.0
2,979,175	-				-0.7
2,979,175	-				-0.4
2,979,175	-				+0.6
2,979,175	-				+0.6
2,979,175	-				-1.2
2,979,175	-				-0.1
2,979,175	-				-0.1
2,979,175	-				-0.0
2,979,325	+		Sama_2476	0.13	-0.8
2,979,325	+		Sama_2476	0.13	-1.9
2,979,325	+		Sama_2476	0.13	-0.0
2,979,326	-		Sama_2476	0.13	+0.5
2,979,326	-		Sama_2476	0.13	-0.4
2,979,326	-		Sama_2476	0.13	-0.0
2,979,354	-		Sama_2476	0.16	-0.0
2,979,374	+		Sama_2476	0.18	-1.4
2,979,441	+		Sama_2476	0.24	+0.6
2,979,442	-		Sama_2476	0.24	-0.5
2,979,470	+		Sama_2476	0.27	-0.9
2,979,470	+		Sama_2476	0.27	+0.7
2,979,471	-		Sama_2476	0.27	-0.0
2,979,471	-		Sama_2476	0.27	+1.0
2,979,600	-		Sama_2476	0.39	+0.2
2,979,633	-		Sama_2476	0.42	-0.6
2,979,675	-		Sama_2476	0.47	-0.5
2,979,686	+		Sama_2476	0.48	+0.2
2,979,687	-		Sama_2476	0.48	+1.1
2,979,687	-		Sama_2476	0.48	+0.0
2,979,710	+		Sama_2476	0.50	-0.5
2,979,713	+		Sama_2476	0.50	+0.2
2,979,713	+		Sama_2476	0.50	+0.4
2,979,713	+		Sama_2476	0.50	-1.0
2,979,714	-		Sama_2476	0.50	+0.1
2,979,714	-		Sama_2476	0.50	+0.4
2,979,725	+		Sama_2476	0.51	-1.7
2,979,726	-		Sama_2476	0.51	+1.1
2,979,746	+		Sama_2476	0.53	+1.5
2,979,747	-		Sama_2476	0.53	-0.1
2,979,747	-		Sama_2476	0.53	-0.4
2,979,768	-		Sama_2476	0.55	+1.2
2,979,768	-		Sama_2476	0.55	-0.8
2,979,793	+		Sama_2476	0.58	-1.4
2,979,793	+		Sama_2476	0.58	+0.4
2,979,793	+		Sama_2476	0.58	-1.6
2,979,794	-		Sama_2476	0.58	-0.3
2,979,794	-		Sama_2476	0.58	-1.4
2,979,818	+		Sama_2476	0.60	-0.1
2,979,819	-		Sama_2476	0.60	+1.1
2,979,819	-		Sama_2476	0.60	+0.5
2,979,819	-		Sama_2476	0.60	-0.2
2,979,819	-		Sama_2476	0.60	+1.0
2,979,824	+		Sama_2476	0.61	-0.0
2,979,824	+		Sama_2476	0.61	-0.4
2,979,825	-		Sama_2476	0.61	+1.2
2,979,938	+		Sama_2476	0.72	+0.3
2,979,981	+		Sama_2476	0.76	-0.2
2,979,981	+		Sama_2476	0.76	+0.6
2,979,982	-		Sama_2476	0.76	-0.2
2,980,042	+		Sama_2476	0.82	-1.0
2,980,042	+		Sama_2476	0.82	-0.7
2,980,043	-		Sama_2476	0.82	-0.4
2,980,067	+		Sama_2476	0.84	+1.2
2,980,068	-		Sama_2476	0.84	-0.7
2,980,068	-		Sama_2476	0.84	-0.5
2,980,068	-		Sama_2476	0.84	+1.3
2,980,075	+		Sama_2476	0.85	+0.2
2,980,075	+		Sama_2476	0.85	+2.0
2,980,089	+		Sama_2476	0.86	-0.4
2,980,089	+		Sama_2476	0.86	-0.7
2,980,089	+		Sama_2476	0.86	+0.6
2,980,090	-		Sama_2476	0.87	+0.3
2,980,176	+				-0.1
2,980,176	+				-0.9
2,980,176	+				-1.5
2,980,177	-				-0.9
2,980,177	-				+1.2