Strain Fitness in Shewanella amazonensis SB2B around Sama_2225

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,688,249	+		Sama_2224	0.38	-2.1
2,688,528	+		Sama_2224	0.65	-2.1
2,688,561	+		Sama_2224	0.69	-2.6
2,688,639	+		Sama_2224	0.76	-1.9
2,688,727	+		Sama_2224	0.85	-2.4
2,688,921	+				+0.4
2,688,922	-				+0.5
2,688,922	-				-1.2
2,688,922	-				+0.5
2,688,927	-				-1.8
2,689,034	+		Sama_2225	0.26	-1.7
2,689,164	+		Sama_2225	0.52	-0.5
2,689,164	+		Sama_2225	0.52	-0.9
2,689,164	+		Sama_2225	0.52	-0.8
2,689,165	-		Sama_2225	0.52	+1.9
2,689,311	-		Sama_2225	0.81	-0.2
2,689,379	+				+0.1
2,689,380	-				-0.9
2,689,402	+				+0.5
2,689,432	+				-2.7
2,689,501	-				+1.8
2,689,501	-				+0.2
2,689,541	+				+0.5
2,689,549	+				-0.1
2,689,631	+				-0.2
2,689,671	+				+2.7
2,689,681	+				-0.2
2,689,682	-				+1.7
2,689,682	-				+0.2
2,689,682	-				+1.0
2,689,685	-				-1.9
2,689,713	+				+1.0
2,689,713	+				+1.2
2,689,713	+				-0.0
2,689,714	-				-0.3
2,689,761	+				-0.4
2,689,761	+				+0.2
2,689,761	+				+0.2
2,689,761	+				-1.0
2,689,761	+				+0.5
2,689,761	+				-0.1
2,689,761	+				+0.8
2,689,761	+				-1.6
2,689,761	+				-0.0
2,689,761	+				-0.5
2,689,762	-				+0.5
2,689,762	-				+0.8
2,689,762	-				-1.1
2,689,901	+		Sama_2226	0.33	+0.3
2,689,902	-		Sama_2226	0.34	-0.1
2,689,902	-		Sama_2226	0.34	-1.1
2,689,977	+		Sama_2226	0.52	-0.8
2,689,977	+		Sama_2226	0.52	+0.5
2,690,034	+		Sama_2226	0.65	-0.0
2,690,034	+		Sama_2226	0.65	+0.9
2,690,073	+		Sama_2226	0.75	+0.0
2,690,074	-		Sama_2226	0.75	+0.3
2,690,074	-		Sama_2226	0.75	-1.1
2,690,074	-		Sama_2226	0.75	-2.4
2,690,075	+		Sama_2226	0.75	+0.9
2,690,075	+		Sama_2226	0.75	-0.4
2,690,154	-				-1.2
2,690,193	+				+0.0
2,690,222	+				-0.2
2,690,345	+				+0.2
2,690,345	+				+1.2
2,690,345	+				-0.3
2,690,345	+				-1.1
2,690,346	-				+0.0
2,690,349	+				-0.8
2,690,350	-				+0.3
2,690,350	-				+0.5