Strain Fitness in Shewanella amazonensis SB2B around Sama_2057

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,492,175	+		Sama_2056	0.61	+1.5
2,492,175	+		Sama_2056	0.61	-2.0
2,492,176	+		Sama_2056	0.61	-0.7
2,492,176	-		Sama_2056	0.61	+0.6
2,492,176	-		Sama_2056	0.61	+0.7
2,492,176	-		Sama_2056	0.61	+0.3
2,492,176	-		Sama_2056	0.61	-0.9
2,492,177	+		Sama_2056	0.61	-1.3
2,492,177	+		Sama_2056	0.61	+2.5
2,492,177	+		Sama_2056	0.61	+0.4
2,492,178	-		Sama_2056	0.61	-1.0
2,492,178	-		Sama_2056	0.61	+0.2
2,492,183	+		Sama_2056	0.61	-1.3
2,492,183	+		Sama_2056	0.61	+0.5
2,492,183	+		Sama_2056	0.61	-0.1
2,492,184	-		Sama_2056	0.62	-0.1
2,492,188	-		Sama_2056	0.62	-0.5
2,492,188	-		Sama_2056	0.62	-0.3
2,492,217	-		Sama_2056	0.63	+0.8
2,492,247	-		Sama_2056	0.64	+1.3
2,492,273	-		Sama_2056	0.65	-1.1
2,492,273	-		Sama_2056	0.65	-1.8
2,492,311	+		Sama_2056	0.67	+0.5
2,492,311	+		Sama_2056	0.67	-2.5
2,492,313	+		Sama_2056	0.67	-0.9
2,492,313	+		Sama_2056	0.67	-0.8
2,492,314	-		Sama_2056	0.67	-0.0
2,492,314	-		Sama_2056	0.67	-0.6
2,492,314	-		Sama_2056	0.67	-0.5
2,492,381	+		Sama_2056	0.70	-0.4
2,492,514	+		Sama_2056	0.76	+0.8
2,492,644	+		Sama_2056	0.82	+0.5
2,492,644	+		Sama_2056	0.82	+1.4
2,492,645	-		Sama_2056	0.82	-0.5
2,492,645	-		Sama_2056	0.82	+1.6
2,492,645	-		Sama_2056	0.82	-0.5
2,492,670	-		Sama_2056	0.83	-1.8
2,492,670	-		Sama_2056	0.83	-0.7
2,492,690	-		Sama_2056	0.84	+1.1
2,492,690	-		Sama_2056	0.84	-1.3
2,492,690	-		Sama_2056	0.84	-0.7
2,492,690	-		Sama_2056	0.84	-0.5
2,492,690	-		Sama_2056	0.84	-1.4
2,492,829	-				+0.1
2,492,897	+				+0.4
2,492,897	+				-2.5
2,492,897	+				+0.2
2,492,897	+				+0.2
2,492,898	-				+0.1
2,492,898	-				+0.3
2,492,901	+				+0.3
2,492,901	+				+1.3
2,492,901	+				-0.4
2,492,902	-				-0.5
2,492,902	-				-0.1
2,492,902	-				-1.2
2,492,902	-				+0.2
2,492,902	-				-0.5
2,492,902	-				+0.9
2,492,984	-				-0.6
2,492,984	-				-1.1
2,493,054	-				+1.2
2,493,054	-				-0.5
2,493,054	-				-0.2
2,493,077	-				-0.3
2,493,077	-				-1.3
2,493,127	-				-0.9
2,493,208	-	clpS	Sama_2057	0.34	-0.9
2,493,216	-	clpS	Sama_2057	0.37	-1.0
2,493,286	-	clpS	Sama_2057	0.60	-0.8
2,493,291	+	clpS	Sama_2057	0.61	-0.7
2,493,291	+	clpS	Sama_2057	0.61	-0.0
2,493,313	+	clpS	Sama_2057	0.68	-0.2
2,493,338	-	clpS	Sama_2057	0.76	-1.3
2,493,338	+	clpS	Sama_2057	0.76	+1.0
2,493,338	+	clpS	Sama_2057	0.76	-1.3
2,493,339	-	clpS	Sama_2057	0.77	-0.6
2,493,340	+	clpS	Sama_2057	0.77	-0.3
2,493,341	-	clpS	Sama_2057	0.77	+0.2
2,493,341	-	clpS	Sama_2057	0.77	-1.3
2,493,341	-	clpS	Sama_2057	0.77	-0.2
2,493,341	-	clpS	Sama_2057	0.77	-1.4
2,493,382	-				-0.9
2,493,382	-				+0.8
2,493,390	+				-1.7
2,493,393	-				-0.5
2,493,412	+				-1.5
2,493,412	+				+1.7
2,493,412	+				-0.9
2,493,412	+				-0.2
2,493,412	+				+0.8
2,493,412	+				+0.2
2,493,413	-				-0.1
2,493,413	-				+0.1
2,493,413	-				+0.0
2,493,413	-				-0.2
2,493,413	-				+0.2
2,493,413	-				-1.8
2,493,413	-				+0.6
2,493,418	+				-2.6
2,493,418	+				+0.7
2,493,419	-				+0.5
2,493,419	-				-0.7
2,493,419	-				-1.5
2,493,419	-				-1.7
2,493,422	-				-0.5
2,493,434	-				+0.4
2,493,434	-				-2.3
2,493,520	+				-0.4
2,493,521	-				-0.0
2,493,552	+				+0.3
2,493,552	+				+0.7
2,493,552	+				+0.2
2,493,552	+				-0.1
2,493,552	+				-0.6
2,493,552	+				-0.5
2,493,553	-				-1.8
2,493,564	+				-1.5
2,493,564	+				-1.1
2,493,565	-				+0.7
2,493,574	+				+0.5
2,493,574	+				+0.8
2,493,574	+				+0.5
2,493,577	+				+0.8
2,493,577	+				-1.0
2,493,578	-				+0.6
2,493,578	-				-1.3
2,493,582	+				-0.3
2,493,583	-				-0.3
2,493,583	-				-1.3
2,493,583	-				-0.1
2,493,592	+				-1.0
2,493,592	+				-0.5
2,493,615	+				-1.1
2,493,615	+				-0.5
2,493,633	+				-0.9
2,493,633	+				-0.3
2,493,633	+				+0.9
2,493,633	+				+0.9
2,493,633	+				+1.1
2,493,633	+				+0.6
2,493,633	+				+0.8
2,493,634	-				+0.5
2,493,634	-				+0.2
2,493,667	-		Sama_2058	0.25	+0.8
2,493,695	+		Sama_2058	0.38	+0.1
2,493,695	+		Sama_2058	0.38	-1.9
2,493,696	-		Sama_2058	0.39	-1.3
2,493,696	-		Sama_2058	0.39	+0.3
2,493,696	-		Sama_2058	0.39	-0.0
2,493,836	-				-0.1
2,493,877	+				-0.1
2,493,877	+				-2.1
2,493,877	+				+1.1
2,494,001	+				-0.5
2,494,033	-				-0.7
2,494,036	-				+0.5
2,494,112	-				+0.8
2,494,112	-				-0.3
2,494,183	-		Sama_2059	0.10	+0.7
2,494,183	-		Sama_2059	0.10	+0.6
2,494,194	+		Sama_2059	0.11	+0.2
2,494,194	+		Sama_2059	0.11	+0.8
2,494,227	-		Sama_2059	0.12	+0.2
2,494,227	-		Sama_2059	0.12	+0.7
2,494,265	-		Sama_2059	0.14	+0.5
2,494,277	-		Sama_2059	0.14	-0.2
2,494,387	-		Sama_2059	0.19	+0.9