Strain Fitness in Shewanella amazonensis SB2B around Sama_2052

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,487,510	+		Sama_2050	0.64	+0.6
2,487,511	-		Sama_2050	0.64	+1.2
2,487,511	-		Sama_2050	0.64	-0.6
2,487,511	-		Sama_2050	0.64	-0.8
2,487,560	-		Sama_2050	0.71	+0.6
2,487,560	-		Sama_2050	0.71	+0.5
2,487,560	-		Sama_2050	0.71	+0.5
2,487,560	-		Sama_2050	0.71	-1.5
2,487,560	-		Sama_2050	0.71	+0.1
2,487,560	-		Sama_2050	0.71	-0.3
2,487,560	-		Sama_2050	0.71	+1.0
2,487,623	-		Sama_2050	0.79	-0.6
2,487,623	-		Sama_2050	0.79	-0.5
2,487,623	-		Sama_2050	0.79	+0.5
2,487,667	+		Sama_2050	0.85	-0.8
2,487,668	-		Sama_2050	0.85	-0.5
2,487,668	-		Sama_2050	0.85	+0.1
2,487,668	-		Sama_2050	0.85	-1.5
2,487,695	-		Sama_2050	0.89	+0.5
2,487,695	-		Sama_2050	0.89	-0.7
2,487,723	+				+0.5
2,487,756	-				+1.7
2,487,797	+				+0.0
2,487,798	-				+1.6
2,487,798	-				+0.0
2,487,798	-				-0.6
2,487,798	-				+1.1
2,487,798	-				-2.1
2,487,802	-				+0.7
2,487,817	-				-0.3
2,487,829	+				+0.5
2,487,830	-				+0.5
2,487,913	+				+1.5
2,487,913	+				-0.8
2,487,916	+				+0.8
2,487,916	+				+0.1
2,487,917	-				+0.3
2,487,917	-				+0.3
2,487,941	+				+1.5
2,487,942	-				+0.1
2,487,942	-				+0.3
2,487,956	+				+0.8
2,487,958	+				-0.6
2,487,958	+				+0.5
2,487,958	+				-0.2
2,487,959	-				-0.5
2,487,959	-				-1.1
2,487,964	+				+0.2
2,487,964	+				-0.1
2,487,964	+				-0.1
2,487,965	-				-0.3
2,487,965	-				+1.2
2,487,965	-				+0.3
2,487,965	-				-0.5
2,487,965	-				-0.5
2,487,971	-				+2.5
2,487,971	-				+0.5
2,487,971	-				-0.2
2,487,971	-				+0.1
2,488,038	+		Sama_2051	0.18	+0.7
2,488,038	+		Sama_2051	0.18	+0.6
2,488,081	+		Sama_2051	0.29	+0.7
2,488,081	+		Sama_2051	0.29	+2.4
2,488,082	-		Sama_2051	0.29	+0.2
2,488,244	-		Sama_2051	0.69	+0.2
2,488,363	-				-0.5
2,488,367	+				+0.2
2,488,379	+				-1.8
2,488,380	-				+0.4
2,488,380	-				+0.4
2,488,435	-				+0.1
2,488,435	-				-1.5
2,488,439	-				+1.3
2,488,501	+				-0.5
2,488,502	-				-0.5
2,488,620	-		Sama_2052	0.34	-0.5
2,488,620	-		Sama_2052	0.34	-0.9
2,488,810	-		Sama_2052	0.74	-0.5
2,488,810	-		Sama_2052	0.74	-0.8
2,488,860	-		Sama_2052	0.85	-1.0
2,488,910	+				+0.1
2,488,910	+				+1.2
2,488,910	+				-0.8
2,488,910	+				-0.0
2,488,911	-				-0.1
2,488,911	-				-1.1
2,488,911	-				-0.7
2,488,929	+				+0.8
2,488,930	-				+0.6
2,488,949	+				-0.3
2,488,949	+				-0.5
2,488,949	+				-1.4
2,488,950	-				-0.5
2,488,950	-				-0.8
2,488,952	+				-0.1
2,488,952	+				+0.1
2,488,952	+				+0.7
2,488,953	-				+0.4
2,488,969	+				+0.5
2,488,970	-				-0.5
2,488,970	-				-0.7
2,488,972	+				+0.7
2,488,972	+				+0.2
2,488,973	-				-1.0
2,488,998	+				-0.3
2,488,998	+				-0.1
2,489,015	+				-0.6
2,489,016	-				+1.5
2,489,110	+	aat	Sama_2053	0.18	-0.3
2,489,110	+	aat	Sama_2053	0.18	+0.3
2,489,110	+	aat	Sama_2053	0.18	-0.2
2,489,110	+	aat	Sama_2053	0.18	-0.4
2,489,110	+	aat	Sama_2053	0.18	-0.9
2,489,110	+	aat	Sama_2053	0.18	-0.8
2,489,111	-	aat	Sama_2053	0.18	-1.7
2,489,111	-	aat	Sama_2053	0.18	+2.7
2,489,111	-	aat	Sama_2053	0.18	+0.4
2,489,111	-	aat	Sama_2053	0.18	-0.5
2,489,111	-	aat	Sama_2053	0.18	-1.0
2,489,111	-	aat	Sama_2053	0.18	-0.7
2,489,148	+	aat	Sama_2053	0.23	-0.1
2,489,148	+	aat	Sama_2053	0.23	+0.4
2,489,148	+	aat	Sama_2053	0.23	+0.5
2,489,149	-	aat	Sama_2053	0.24	-0.4
2,489,149	-	aat	Sama_2053	0.24	+1.2
2,489,149	-	aat	Sama_2053	0.24	+1.8
2,489,199	+	aat	Sama_2053	0.31	-0.5
2,489,200	-	aat	Sama_2053	0.31	-1.0
2,489,347	+	aat	Sama_2053	0.51	+1.1
2,489,384	+	aat	Sama_2053	0.57	-1.5
2,489,520	-	aat	Sama_2053	0.76	-0.3
2,489,520	-	aat	Sama_2053	0.76	-0.1
2,489,535	+	aat	Sama_2053	0.78	+0.1
2,489,535	+	aat	Sama_2053	0.78	+0.6
2,489,536	-	aat	Sama_2053	0.78	-0.0
2,489,690	-				-1.5
2,489,690	-				-0.5
2,489,690	-				+2.1
2,489,690	-				+0.1
2,489,693	-				+1.1
2,489,713	-				-0.2
2,489,721	+				-0.8
2,489,721	+				-0.0
2,489,721	+				+0.1
2,489,722	-				-2.6
2,489,735	+				-1.0
2,489,735	+				-0.7
2,489,736	-				+0.6
2,489,760	+		Sama_2054	0.11	-0.7
2,489,760	+		Sama_2054	0.11	-1.5
2,489,761	-		Sama_2054	0.11	+0.8
2,489,768	-		Sama_2054	0.12	-0.5
2,489,768	-		Sama_2054	0.12	-0.9
2,489,808	+		Sama_2054	0.18	-0.1
2,489,846	+		Sama_2054	0.23	-0.8
2,489,846	+		Sama_2054	0.23	-0.3
2,489,879	-		Sama_2054	0.28	+0.1