Strain Fitness in Shewanella amazonensis SB2B around Sama_1967

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,394,841	+				-0.7
2,394,843	+				-0.0
2,394,843	+				+0.0
2,394,844	-				+0.4
2,394,844	-				+1.0
2,394,844	-				+0.3
2,394,988	-		Sama_1966	0.12	-1.0
2,394,988	-		Sama_1966	0.12	+0.4
2,395,040	-		Sama_1966	0.19	+1.0
2,395,056	+		Sama_1966	0.20	-0.4
2,395,056	+		Sama_1966	0.20	-0.1
2,395,056	+		Sama_1966	0.20	+0.2
2,395,118	+		Sama_1966	0.28	-0.7
2,395,121	+		Sama_1966	0.28	-0.7
2,395,220	-		Sama_1966	0.40	-0.6
2,395,229	+		Sama_1966	0.41	+0.5
2,395,229	+		Sama_1966	0.41	-1.6
2,395,240	-		Sama_1966	0.43	+0.1
2,395,240	-		Sama_1966	0.43	-0.0
2,395,240	-		Sama_1966	0.43	+0.9
2,395,285	-		Sama_1966	0.48	-0.1
2,395,312	+		Sama_1966	0.51	+1.2
2,395,312	+		Sama_1966	0.51	-1.3
2,395,312	+		Sama_1966	0.51	-0.0
2,395,312	+		Sama_1966	0.51	-0.5
2,395,313	-		Sama_1966	0.51	-0.5
2,395,313	-		Sama_1966	0.51	-0.6
2,395,313	-		Sama_1966	0.51	+1.1
2,395,368	+		Sama_1966	0.58	-0.1
2,395,368	+		Sama_1966	0.58	-0.3
2,395,368	+		Sama_1966	0.58	-1.0
2,395,369	-		Sama_1966	0.58	+0.6
2,395,377	+		Sama_1966	0.59	-1.5
2,395,386	+		Sama_1966	0.60	+0.4
2,395,443	+		Sama_1966	0.67	+0.1
2,395,443	+		Sama_1966	0.67	+1.9
2,395,443	+		Sama_1966	0.67	+0.6
2,395,456	+		Sama_1966	0.69	+1.0
2,395,456	+		Sama_1966	0.69	+1.7
2,395,456	+		Sama_1966	0.69	+0.0
2,395,456	+		Sama_1966	0.69	-0.0
2,395,653	+				-0.9
2,395,653	+				+1.1
2,395,705	+				+1.2
2,395,722	+				+0.4
2,395,723	-				-1.6
2,395,806	+				+2.2
2,395,807	-				+0.3
2,395,809	-				+1.4
2,395,879	+				+0.1
2,396,073	+		Sama_1967	0.37	-0.1
2,396,073	+		Sama_1967	0.37	+0.2
2,396,075	+		Sama_1967	0.37	-0.3
2,396,075	+		Sama_1967	0.37	-0.8
2,396,090	+		Sama_1967	0.40	-1.0
2,396,090	+		Sama_1967	0.40	+1.2
2,396,091	-		Sama_1967	0.40	-0.8
2,396,091	-		Sama_1967	0.40	-0.3
2,396,093	+		Sama_1967	0.40	-0.0
2,396,094	-		Sama_1967	0.40	-1.6
2,396,137	+		Sama_1967	0.47	-0.6
2,396,156	-		Sama_1967	0.50	+0.0
2,396,156	-		Sama_1967	0.50	-1.4
2,396,401	+		Sama_1967	0.89	-1.3
2,396,402	-		Sama_1967	0.89	-0.8
2,396,402	-		Sama_1967	0.89	-1.1
2,396,458	+				+0.2
2,396,458	+				-0.3
2,396,458	+				+0.2
2,396,458	+				-0.8
2,396,459	-				-0.6
2,396,469	+				-0.0
2,396,470	-				+0.8
2,396,490	+				+0.2
2,396,491	-				-0.3
2,396,491	-				-0.1
2,396,491	-				+0.1
2,396,527	-				+0.9
2,396,527	-				-0.1
2,396,562	+				-1.0
2,396,563	-				+0.4
2,396,608	+		Sama_1968	0.14	-1.9
2,396,609	-		Sama_1968	0.14	-2.1
2,396,609	-		Sama_1968	0.14	-0.7
2,396,628	+		Sama_1968	0.16	-0.2
2,396,629	-		Sama_1968	0.16	-0.6
2,396,629	-		Sama_1968	0.16	-0.1
2,396,629	-		Sama_1968	0.16	+1.7
2,396,629	-		Sama_1968	0.16	-1.4
2,396,629	-		Sama_1968	0.16	+0.4
2,396,629	-		Sama_1968	0.16	+0.4
2,396,636	-		Sama_1968	0.17	-1.6
2,396,636	-		Sama_1968	0.17	+1.4
2,396,638	+		Sama_1968	0.17	-0.3
2,396,639	-		Sama_1968	0.17	-0.1
2,396,649	+		Sama_1968	0.18	-0.6
2,396,662	+		Sama_1968	0.20	+0.9
2,396,662	+		Sama_1968	0.20	-1.1
2,396,662	+		Sama_1968	0.20	+0.7
2,396,663	-		Sama_1968	0.20	+1.7
2,396,663	-		Sama_1968	0.20	-0.3
2,396,663	-		Sama_1968	0.20	+0.4
2,396,665	-		Sama_1968	0.20	+2.0
2,396,779	+		Sama_1968	0.34	+0.4
2,396,799	+		Sama_1968	0.36	-0.1
2,396,799	+		Sama_1968	0.36	+0.4
2,396,841	+		Sama_1968	0.41	+0.4
2,396,841	+		Sama_1968	0.41	-1.1
2,396,912	+		Sama_1968	0.50	+0.2
2,396,912	+		Sama_1968	0.50	+0.4
2,396,913	-		Sama_1968	0.50	+0.0
2,396,916	-		Sama_1968	0.50	+0.9
2,396,929	+		Sama_1968	0.52	-0.3
2,396,929	+		Sama_1968	0.52	-1.1
2,396,929	+		Sama_1968	0.52	-0.3
2,396,929	+		Sama_1968	0.52	+0.8
2,396,929	+		Sama_1968	0.52	-1.1
2,396,929	+		Sama_1968	0.52	+0.7
2,396,929	+		Sama_1968	0.52	-2.1
2,396,929	+		Sama_1968	0.52	+0.4
2,396,930	-		Sama_1968	0.52	-0.4
2,396,930	-		Sama_1968	0.52	+0.4
2,396,930	-		Sama_1968	0.52	-0.1
2,396,932	-		Sama_1968	0.52	+1.2
2,396,932	-		Sama_1968	0.52	-0.4
2,397,044	+		Sama_1968	0.65	+0.4
2,397,052	+		Sama_1968	0.66	+0.4
2,397,052	+		Sama_1968	0.66	+1.0
2,397,052	+		Sama_1968	0.66	-1.1
2,397,056	+		Sama_1968	0.67	+0.8
2,397,056	+		Sama_1968	0.67	-1.4
2,397,057	-		Sama_1968	0.67	-1.8
2,397,110	+		Sama_1968	0.73	-0.6
2,397,110	+		Sama_1968	0.73	-2.0
2,397,110	+		Sama_1968	0.73	-0.2
2,397,164	-		Sama_1968	0.80	+0.0
2,397,166	+		Sama_1968	0.80	+0.5
2,397,166	+		Sama_1968	0.80	-0.6
2,397,166	+		Sama_1968	0.80	-0.8
2,397,166	+		Sama_1968	0.80	-0.3
2,397,166	+		Sama_1968	0.80	+0.1
2,397,170	+		Sama_1968	0.80	+0.5
2,397,171	-		Sama_1968	0.81	+0.1
2,397,231	+		Sama_1968	0.88	+0.6
2,397,273	-				-2.4
2,397,310	+				-0.0
2,397,310	+				-0.3
2,397,310	+				+0.4
2,397,310	+				+0.1
2,397,310	+				-0.4
2,397,310	+				+1.0
2,397,311	-				+0.4
2,397,311	-				+0.6
2,397,311	-				-0.3
2,397,311	-				+0.2
2,397,311	-				+0.9
2,397,312	+				-0.1
2,397,312	+				-0.0
2,397,312	+				-0.6
2,397,313	-				-2.4
2,397,340	+				+0.9
2,397,340	+				-0.1
2,397,340	+				-0.6
2,397,341	-				-0.5
2,397,341	-				-2.4
2,397,341	-				+1.2
2,397,394	+				-0.1
2,397,394	+				+0.2
2,397,394	+				+1.4
2,397,395	-				+0.8
2,397,441	-		Sama_1969	0.12	-0.0
2,397,452	+		Sama_1969	0.13	-0.6