Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1966 and Sama_1967 are separated by 122 nucleotides Sama_1967 and Sama_1968 are separated by 22 nucleotides Sama_1968 and Sama_1969 overlap by 4 nucleotides
Sama_1966: Sama_1966 - hypothetical protein (RefSeq), at 2,394,886 to 2,395,716
_1966
Sama_1967: Sama_1967 - hypothetical protein (RefSeq), at 2,395,839 to 2,396,471
_1967
Sama_1968: Sama_1968 - hypothetical protein (RefSeq), at 2,396,494 to 2,397,333
_1968
Sama_1969: Sama_1969 - ABC transporter, ATP-binding protein (RefSeq), at 2,397,330 to 2,398,235
_1969
Position (kb)
2395
2396
2397 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2394.841 kb on + strand at 2394.843 kb on + strand at 2394.843 kb on + strand at 2394.844 kb on - strand at 2394.844 kb on - strand at 2394.844 kb on - strand at 2394.988 kb on - strand, within Sama_1966 at 2394.988 kb on - strand, within Sama_1966 at 2395.040 kb on - strand, within Sama_1966 at 2395.056 kb on + strand, within Sama_1966 at 2395.056 kb on + strand, within Sama_1966 at 2395.056 kb on + strand, within Sama_1966 at 2395.118 kb on + strand, within Sama_1966 at 2395.121 kb on + strand, within Sama_1966 at 2395.220 kb on - strand, within Sama_1966 at 2395.229 kb on + strand, within Sama_1966 at 2395.229 kb on + strand, within Sama_1966 at 2395.240 kb on - strand, within Sama_1966 at 2395.240 kb on - strand, within Sama_1966 at 2395.240 kb on - strand, within Sama_1966 at 2395.285 kb on - strand, within Sama_1966 at 2395.312 kb on + strand, within Sama_1966 at 2395.312 kb on + strand, within Sama_1966 at 2395.312 kb on + strand, within Sama_1966 at 2395.312 kb on + strand, within Sama_1966 at 2395.313 kb on - strand, within Sama_1966 at 2395.313 kb on - strand, within Sama_1966 at 2395.313 kb on - strand, within Sama_1966 at 2395.368 kb on + strand, within Sama_1966 at 2395.368 kb on + strand, within Sama_1966 at 2395.368 kb on + strand, within Sama_1966 at 2395.369 kb on - strand, within Sama_1966 at 2395.377 kb on + strand, within Sama_1966 at 2395.386 kb on + strand, within Sama_1966 at 2395.443 kb on + strand, within Sama_1966 at 2395.443 kb on + strand, within Sama_1966 at 2395.443 kb on + strand, within Sama_1966 at 2395.456 kb on + strand, within Sama_1966 at 2395.456 kb on + strand, within Sama_1966 at 2395.456 kb on + strand, within Sama_1966 at 2395.456 kb on + strand, within Sama_1966 at 2395.653 kb on + strand at 2395.653 kb on + strand at 2395.705 kb on + strand at 2395.722 kb on + strand at 2395.723 kb on - strand at 2395.806 kb on + strand at 2395.807 kb on - strand at 2395.809 kb on - strand at 2395.879 kb on + strand at 2396.073 kb on + strand, within Sama_1967 at 2396.073 kb on + strand, within Sama_1967 at 2396.075 kb on + strand, within Sama_1967 at 2396.075 kb on + strand, within Sama_1967 at 2396.090 kb on + strand, within Sama_1967 at 2396.090 kb on + strand, within Sama_1967 at 2396.091 kb on - strand, within Sama_1967 at 2396.091 kb on - strand, within Sama_1967 at 2396.093 kb on + strand, within Sama_1967 at 2396.094 kb on - strand, within Sama_1967 at 2396.137 kb on + strand, within Sama_1967 at 2396.156 kb on - strand, within Sama_1967 at 2396.156 kb on - strand, within Sama_1967 at 2396.401 kb on + strand, within Sama_1967 at 2396.402 kb on - strand, within Sama_1967 at 2396.402 kb on - strand, within Sama_1967 at 2396.458 kb on + strand at 2396.458 kb on + strand at 2396.458 kb on + strand at 2396.458 kb on + strand at 2396.459 kb on - strand at 2396.469 kb on + strand at 2396.470 kb on - strand at 2396.490 kb on + strand at 2396.491 kb on - strand at 2396.491 kb on - strand at 2396.491 kb on - strand at 2396.527 kb on - strand at 2396.527 kb on - strand at 2396.562 kb on + strand at 2396.563 kb on - strand at 2396.608 kb on + strand, within Sama_1968 at 2396.609 kb on - strand, within Sama_1968 at 2396.609 kb on - strand, within Sama_1968 at 2396.628 kb on + strand, within Sama_1968 at 2396.629 kb on - strand, within Sama_1968 at 2396.629 kb on - strand, within Sama_1968 at 2396.629 kb on - strand, within Sama_1968 at 2396.629 kb on - strand, within Sama_1968 at 2396.629 kb on - strand, within Sama_1968 at 2396.629 kb on - strand, within Sama_1968 at 2396.636 kb on - strand, within Sama_1968 at 2396.636 kb on - strand, within Sama_1968 at 2396.638 kb on + strand, within Sama_1968 at 2396.639 kb on - strand, within Sama_1968 at 2396.649 kb on + strand, within Sama_1968 at 2396.662 kb on + strand, within Sama_1968 at 2396.662 kb on + strand, within Sama_1968 at 2396.662 kb on + strand, within Sama_1968 at 2396.663 kb on - strand, within Sama_1968 at 2396.663 kb on - strand, within Sama_1968 at 2396.663 kb on - strand, within Sama_1968 at 2396.665 kb on - strand, within Sama_1968 at 2396.779 kb on + strand, within Sama_1968 at 2396.799 kb on + strand, within Sama_1968 at 2396.799 kb on + strand, within Sama_1968 at 2396.841 kb on + strand, within Sama_1968 at 2396.841 kb on + strand, within Sama_1968 at 2396.912 kb on + strand, within Sama_1968 at 2396.912 kb on + strand, within Sama_1968 at 2396.913 kb on - strand, within Sama_1968 at 2396.916 kb on - strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.929 kb on + strand, within Sama_1968 at 2396.930 kb on - strand, within Sama_1968 at 2396.930 kb on - strand, within Sama_1968 at 2396.930 kb on - strand, within Sama_1968 at 2396.932 kb on - strand, within Sama_1968 at 2396.932 kb on - strand, within Sama_1968 at 2397.044 kb on + strand, within Sama_1968 at 2397.052 kb on + strand, within Sama_1968 at 2397.052 kb on + strand, within Sama_1968 at 2397.052 kb on + strand, within Sama_1968 at 2397.056 kb on + strand, within Sama_1968 at 2397.056 kb on + strand, within Sama_1968 at 2397.057 kb on - strand, within Sama_1968 at 2397.110 kb on + strand, within Sama_1968 at 2397.110 kb on + strand, within Sama_1968 at 2397.110 kb on + strand, within Sama_1968 at 2397.164 kb on - strand, within Sama_1968 at 2397.166 kb on + strand, within Sama_1968 at 2397.166 kb on + strand, within Sama_1968 at 2397.166 kb on + strand, within Sama_1968 at 2397.166 kb on + strand, within Sama_1968 at 2397.166 kb on + strand, within Sama_1968 at 2397.170 kb on + strand, within Sama_1968 at 2397.171 kb on - strand, within Sama_1968 at 2397.231 kb on + strand, within Sama_1968 at 2397.273 kb on - strand at 2397.310 kb on + strand at 2397.310 kb on + strand at 2397.310 kb on + strand at 2397.310 kb on + strand at 2397.310 kb on + strand at 2397.310 kb on + strand at 2397.311 kb on - strand at 2397.311 kb on - strand at 2397.311 kb on - strand at 2397.311 kb on - strand at 2397.311 kb on - strand at 2397.312 kb on + strand at 2397.312 kb on + strand at 2397.312 kb on + strand at 2397.313 kb on - strand at 2397.340 kb on + strand at 2397.340 kb on + strand at 2397.340 kb on + strand at 2397.341 kb on - strand at 2397.341 kb on - strand at 2397.341 kb on - strand at 2397.394 kb on + strand at 2397.394 kb on + strand at 2397.394 kb on + strand at 2397.395 kb on - strand at 2397.441 kb on - strand, within Sama_1969 at 2397.452 kb on + strand, within Sama_1969
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 2,394,841 + -0.7 2,394,843 + -0.0 2,394,843 + +0.0 2,394,844 - +0.4 2,394,844 - +1.0 2,394,844 - +0.3 2,394,988 - Sama_1966 0.12 -1.0 2,394,988 - Sama_1966 0.12 +0.4 2,395,040 - Sama_1966 0.19 +1.0 2,395,056 + Sama_1966 0.20 -0.4 2,395,056 + Sama_1966 0.20 -0.1 2,395,056 + Sama_1966 0.20 +0.2 2,395,118 + Sama_1966 0.28 -0.7 2,395,121 + Sama_1966 0.28 -0.7 2,395,220 - Sama_1966 0.40 -0.6 2,395,229 + Sama_1966 0.41 +0.5 2,395,229 + Sama_1966 0.41 -1.6 2,395,240 - Sama_1966 0.43 +0.1 2,395,240 - Sama_1966 0.43 -0.0 2,395,240 - Sama_1966 0.43 +0.9 2,395,285 - Sama_1966 0.48 -0.1 2,395,312 + Sama_1966 0.51 +1.2 2,395,312 + Sama_1966 0.51 -1.3 2,395,312 + Sama_1966 0.51 -0.0 2,395,312 + Sama_1966 0.51 -0.5 2,395,313 - Sama_1966 0.51 -0.5 2,395,313 - Sama_1966 0.51 -0.6 2,395,313 - Sama_1966 0.51 +1.1 2,395,368 + Sama_1966 0.58 -0.1 2,395,368 + Sama_1966 0.58 -0.3 2,395,368 + Sama_1966 0.58 -1.0 2,395,369 - Sama_1966 0.58 +0.6 2,395,377 + Sama_1966 0.59 -1.5 2,395,386 + Sama_1966 0.60 +0.4 2,395,443 + Sama_1966 0.67 +0.1 2,395,443 + Sama_1966 0.67 +1.9 2,395,443 + Sama_1966 0.67 +0.6 2,395,456 + Sama_1966 0.69 +1.0 2,395,456 + Sama_1966 0.69 +1.7 2,395,456 + Sama_1966 0.69 +0.0 2,395,456 + Sama_1966 0.69 -0.0 2,395,653 + -0.9 2,395,653 + +1.1 2,395,705 + +1.2 2,395,722 + +0.4 2,395,723 - -1.6 2,395,806 + +2.2 2,395,807 - +0.3 2,395,809 - +1.4 2,395,879 + +0.1 2,396,073 + Sama_1967 0.37 -0.1 2,396,073 + Sama_1967 0.37 +0.2 2,396,075 + Sama_1967 0.37 -0.3 2,396,075 + Sama_1967 0.37 -0.8 2,396,090 + Sama_1967 0.40 -1.0 2,396,090 + Sama_1967 0.40 +1.2 2,396,091 - Sama_1967 0.40 -0.8 2,396,091 - Sama_1967 0.40 -0.3 2,396,093 + Sama_1967 0.40 -0.0 2,396,094 - Sama_1967 0.40 -1.6 2,396,137 + Sama_1967 0.47 -0.6 2,396,156 - Sama_1967 0.50 +0.0 2,396,156 - Sama_1967 0.50 -1.4 2,396,401 + Sama_1967 0.89 -1.3 2,396,402 - Sama_1967 0.89 -0.8 2,396,402 - Sama_1967 0.89 -1.1 2,396,458 + +0.2 2,396,458 + -0.3 2,396,458 + +0.2 2,396,458 + -0.8 2,396,459 - -0.6 2,396,469 + -0.0 2,396,470 - +0.8 2,396,490 + +0.2 2,396,491 - -0.3 2,396,491 - -0.1 2,396,491 - +0.1 2,396,527 - +0.9 2,396,527 - -0.1 2,396,562 + -1.0 2,396,563 - +0.4 2,396,608 + Sama_1968 0.14 -1.9 2,396,609 - Sama_1968 0.14 -2.1 2,396,609 - Sama_1968 0.14 -0.7 2,396,628 + Sama_1968 0.16 -0.2 2,396,629 - Sama_1968 0.16 -0.6 2,396,629 - Sama_1968 0.16 -0.1 2,396,629 - Sama_1968 0.16 +1.7 2,396,629 - Sama_1968 0.16 -1.4 2,396,629 - Sama_1968 0.16 +0.4 2,396,629 - Sama_1968 0.16 +0.4 2,396,636 - Sama_1968 0.17 -1.6 2,396,636 - Sama_1968 0.17 +1.4 2,396,638 + Sama_1968 0.17 -0.3 2,396,639 - Sama_1968 0.17 -0.1 2,396,649 + Sama_1968 0.18 -0.6 2,396,662 + Sama_1968 0.20 +0.9 2,396,662 + Sama_1968 0.20 -1.1 2,396,662 + Sama_1968 0.20 +0.7 2,396,663 - Sama_1968 0.20 +1.7 2,396,663 - Sama_1968 0.20 -0.3 2,396,663 - Sama_1968 0.20 +0.4 2,396,665 - Sama_1968 0.20 +2.0 2,396,779 + Sama_1968 0.34 +0.4 2,396,799 + Sama_1968 0.36 -0.1 2,396,799 + Sama_1968 0.36 +0.4 2,396,841 + Sama_1968 0.41 +0.4 2,396,841 + Sama_1968 0.41 -1.1 2,396,912 + Sama_1968 0.50 +0.2 2,396,912 + Sama_1968 0.50 +0.4 2,396,913 - Sama_1968 0.50 +0.0 2,396,916 - Sama_1968 0.50 +0.9 2,396,929 + Sama_1968 0.52 -0.3 2,396,929 + Sama_1968 0.52 -1.1 2,396,929 + Sama_1968 0.52 -0.3 2,396,929 + Sama_1968 0.52 +0.8 2,396,929 + Sama_1968 0.52 -1.1 2,396,929 + Sama_1968 0.52 +0.7 2,396,929 + Sama_1968 0.52 -2.1 2,396,929 + Sama_1968 0.52 +0.4 2,396,930 - Sama_1968 0.52 -0.4 2,396,930 - Sama_1968 0.52 +0.4 2,396,930 - Sama_1968 0.52 -0.1 2,396,932 - Sama_1968 0.52 +1.2 2,396,932 - Sama_1968 0.52 -0.4 2,397,044 + Sama_1968 0.65 +0.4 2,397,052 + Sama_1968 0.66 +0.4 2,397,052 + Sama_1968 0.66 +1.0 2,397,052 + Sama_1968 0.66 -1.1 2,397,056 + Sama_1968 0.67 +0.8 2,397,056 + Sama_1968 0.67 -1.4 2,397,057 - Sama_1968 0.67 -1.8 2,397,110 + Sama_1968 0.73 -0.6 2,397,110 + Sama_1968 0.73 -2.0 2,397,110 + Sama_1968 0.73 -0.2 2,397,164 - Sama_1968 0.80 +0.0 2,397,166 + Sama_1968 0.80 +0.5 2,397,166 + Sama_1968 0.80 -0.6 2,397,166 + Sama_1968 0.80 -0.8 2,397,166 + Sama_1968 0.80 -0.3 2,397,166 + Sama_1968 0.80 +0.1 2,397,170 + Sama_1968 0.80 +0.5 2,397,171 - Sama_1968 0.81 +0.1 2,397,231 + Sama_1968 0.88 +0.6 2,397,273 - -2.4 2,397,310 + -0.0 2,397,310 + -0.3 2,397,310 + +0.4 2,397,310 + +0.1 2,397,310 + -0.4 2,397,310 + +1.0 2,397,311 - +0.4 2,397,311 - +0.6 2,397,311 - -0.3 2,397,311 - +0.2 2,397,311 - +0.9 2,397,312 + -0.1 2,397,312 + -0.0 2,397,312 + -0.6 2,397,313 - -2.4 2,397,340 + +0.9 2,397,340 + -0.1 2,397,340 + -0.6 2,397,341 - -0.5 2,397,341 - -2.4 2,397,341 - +1.2 2,397,394 + -0.1 2,397,394 + +0.2 2,397,394 + +1.4 2,397,395 - +0.8 2,397,441 - Sama_1969 0.12 -0.0 2,397,452 + Sama_1969 0.13 -0.6
Or see this region's nucleotide sequence