Strain Fitness in Shewanella amazonensis SB2B around Sama_1876

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,290,456	-		Sama_1875	0.74	+0.1
2,290,521	-		Sama_1875	0.77	+0.4
2,290,563	+		Sama_1875	0.79	+0.2
2,290,563	+		Sama_1875	0.79	-1.6
2,290,563	+		Sama_1875	0.79	-1.1
2,290,563	+		Sama_1875	0.79	+0.4
2,290,564	-		Sama_1875	0.79	-0.6
2,290,564	-		Sama_1875	0.79	-1.2
2,290,564	-		Sama_1875	0.79	-1.3
2,290,610	-		Sama_1875	0.81	-0.5
2,290,647	+		Sama_1875	0.82	+0.4
2,290,699	+		Sama_1875	0.84	+0.4
2,290,761	+		Sama_1875	0.87	-0.7
2,290,761	+		Sama_1875	0.87	+0.8
2,290,761	+		Sama_1875	0.87	+1.4
2,290,762	-		Sama_1875	0.87	+0.8
2,290,762	-		Sama_1875	0.87	-0.6
2,290,762	-		Sama_1875	0.87	+0.3
2,290,801	+		Sama_1875	0.88	+0.4
2,290,805	+		Sama_1875	0.89	-0.1
2,290,805	+		Sama_1875	0.89	-1.8
2,290,805	+		Sama_1875	0.89	-1.0
2,290,806	-		Sama_1875	0.89	-1.2
2,290,979	+				+0.4
2,291,081	+				-0.9
2,291,084	+				+0.4
2,291,084	+				-0.1
2,291,104	+				-0.7
2,291,135	-				-1.3
2,291,223	+				-0.0
2,291,250	+				+1.8
2,291,250	+				-0.9
2,291,251	-				-0.4
2,291,251	-				+0.8
2,291,251	-				+0.3
2,291,254	+				-0.9
2,291,255	-				+0.7
2,291,255	-				-1.2
2,291,300	+				+0.0
2,291,301	-				-0.1
2,291,301	-				-0.4
2,291,303	+				+0.7
2,291,304	-				-0.1
2,291,353	+				+1.4
2,291,366	+				+0.4
2,291,379	+				-0.2
2,291,379	+				-0.1
2,291,380	-				-0.3
2,291,493	-		Sama_1876	0.12	+1.7
2,291,596	+		Sama_1876	0.17	-0.0
2,291,597	-		Sama_1876	0.17	-1.2
2,291,605	+		Sama_1876	0.18	+0.7
2,291,605	+		Sama_1876	0.18	-0.0
2,291,606	-		Sama_1876	0.18	+0.3
2,291,703	-		Sama_1876	0.23	+2.3
2,291,792	+		Sama_1876	0.28	-0.1
2,291,792	+		Sama_1876	0.28	-1.2
2,291,792	+		Sama_1876	0.28	-0.9
2,291,792	+		Sama_1876	0.28	-0.2
2,291,792	+		Sama_1876	0.28	+0.7
2,291,793	-		Sama_1876	0.28	+0.9
2,291,793	-		Sama_1876	0.28	+0.2
2,291,793	-		Sama_1876	0.28	-0.5
2,291,793	-		Sama_1876	0.28	+0.4
2,291,861	+		Sama_1876	0.32	-0.0
2,291,862	-		Sama_1876	0.32	-0.5
2,291,865	+		Sama_1876	0.32	+0.0
2,291,885	-		Sama_1876	0.33	-0.6
2,291,977	-		Sama_1876	0.38	+2.4
2,291,977	-		Sama_1876	0.38	+0.1
2,292,064	+		Sama_1876	0.43	-0.4
2,292,065	-		Sama_1876	0.43	-1.2
2,292,156	+		Sama_1876	0.48	+0.4
2,292,156	+		Sama_1876	0.48	-0.1
2,292,156	+		Sama_1876	0.48	-0.1
2,292,156	+		Sama_1876	0.48	+1.0
2,292,157	-		Sama_1876	0.48	+0.4
2,292,160	+		Sama_1876	0.48	+0.4
2,292,168	+		Sama_1876	0.49	-0.7
2,292,169	-		Sama_1876	0.49	+1.1
2,292,169	-		Sama_1876	0.49	-0.5
2,292,183	+		Sama_1876	0.50	+1.6
2,292,237	+		Sama_1876	0.53	+0.1
2,292,251	-		Sama_1876	0.53	+0.9
2,292,251	-		Sama_1876	0.53	+1.7
2,292,251	-		Sama_1876	0.53	-2.8
2,292,299	+		Sama_1876	0.56	+0.8
2,292,299	+		Sama_1876	0.56	-1.7
2,292,358	+		Sama_1876	0.59	+0.1
2,292,358	+		Sama_1876	0.59	-0.6
2,292,358	+		Sama_1876	0.59	+3.2
2,292,359	-		Sama_1876	0.59	-1.2
2,292,359	-		Sama_1876	0.59	-0.1
2,292,359	-		Sama_1876	0.59	-0.3
2,292,359	-		Sama_1876	0.59	-1.2
2,292,359	-		Sama_1876	0.59	-1.0
2,292,380	+		Sama_1876	0.60	+1.6
2,292,381	-		Sama_1876	0.60	+0.1
2,292,428	+		Sama_1876	0.63	-0.3
2,292,471	+		Sama_1876	0.65	+0.1
2,292,492	+		Sama_1876	0.67	-0.7
2,292,492	+		Sama_1876	0.67	+0.7
2,292,493	-		Sama_1876	0.67	-0.1
2,292,512	-		Sama_1876	0.68	+0.8
2,292,583	-		Sama_1876	0.72	-0.6
2,292,583	-		Sama_1876	0.72	-0.5
2,292,609	-		Sama_1876	0.73	-0.9
2,292,618	+		Sama_1876	0.73	+0.4
2,292,628	+		Sama_1876	0.74	+1.4
2,292,738	+		Sama_1876	0.80	+0.7
2,292,739	-		Sama_1876	0.80	-0.4
2,292,781	+		Sama_1876	0.82	+0.4
2,292,781	+		Sama_1876	0.82	-0.2
2,292,781	+		Sama_1876	0.82	-0.0
2,292,781	+		Sama_1876	0.82	+0.4
2,292,782	-		Sama_1876	0.82	-0.8
2,292,823	+		Sama_1876	0.85	-1.2
2,292,824	-		Sama_1876	0.85	-1.0
2,292,860	+		Sama_1876	0.87	-1.2
2,292,860	+		Sama_1876	0.87	+0.9
2,292,860	+		Sama_1876	0.87	-1.2
2,292,861	-		Sama_1876	0.87	-0.6
2,292,861	-		Sama_1876	0.87	+0.8
2,292,886	+		Sama_1876	0.88	+1.5
2,292,886	+		Sama_1876	0.88	-0.8
2,292,886	+		Sama_1876	0.88	+0.3
2,292,886	+		Sama_1876	0.88	+0.2
2,292,886	+		Sama_1876	0.88	-0.4
2,292,886	+		Sama_1876	0.88	+1.4
2,292,918	+		Sama_1876	0.90	-0.4
2,292,919	-				-0.4
2,292,919	-				-0.4
2,292,919	-				-0.3
2,292,919	-				-1.7
2,292,961	-				+0.3
2,292,972	-				+1.0
2,292,972	-				+0.0
2,292,975	+				-1.0
2,292,975	+				-0.2
2,293,033	+				+0.6
2,293,033	+				+0.1
2,293,033	+				-0.8
2,293,034	-				-0.1
2,293,039	+				+1.4
2,293,099	+				-0.3
2,293,099	+				-0.4
2,293,099	+				-1.9
2,293,099	+				-0.7
2,293,100	-				+0.8
2,293,100	-				-0.5
2,293,107	-				+0.2
2,293,107	-				+0.0
2,293,107	-				-0.0
2,293,114	-				-1.1
2,293,116	+				-0.0
2,293,153	-				+0.6
2,293,200	+				+0.6
2,293,201	-				+0.4
2,293,319	+		Sama_1877	0.34	-0.9
2,293,319	+		Sama_1877	0.34	+1.3
2,293,320	-		Sama_1877	0.34	-1.9
2,293,324	-		Sama_1877	0.35	+1.7
2,293,326	+		Sama_1877	0.36	+0.7
2,293,326	+		Sama_1877	0.36	-0.3
2,293,326	+		Sama_1877	0.36	-0.6
2,293,327	-		Sama_1877	0.37	-0.1
2,293,360	+		Sama_1877	0.48	-1.2
2,293,435	-		Sama_1877	0.75	-0.8
2,293,435	-		Sama_1877	0.75	-0.2
2,293,501	+				-0.0
2,293,502	-				-0.2
2,293,506	+				-1.2
2,293,506	+				-0.6
2,293,507	-				+0.2
2,293,507	-				-0.1
2,293,587	+				+0.8
2,293,588	-				-0.9
2,293,640	+		Sama_1878	0.12	-0.1
2,293,683	+		Sama_1878	0.17	+0.3
2,293,683	+		Sama_1878	0.17	+1.0
2,293,683	+		Sama_1878	0.17	-1.5
2,293,684	-		Sama_1878	0.17	+0.2
2,293,712	-		Sama_1878	0.20	+0.1
2,293,712	-		Sama_1878	0.20	-1.0
2,293,739	+		Sama_1878	0.23	+0.1
2,293,748	-		Sama_1878	0.25	+1.1
2,293,748	-		Sama_1878	0.25	+0.2
2,293,802	+		Sama_1878	0.31	+0.1
2,293,802	+		Sama_1878	0.31	+0.8
2,293,811	+		Sama_1878	0.32	+0.3
2,293,846	+		Sama_1878	0.36	+0.3
2,293,846	+		Sama_1878	0.36	+0.4
2,293,860	-		Sama_1878	0.38	+2.0
2,293,896	-		Sama_1878	0.42	-1.2
2,293,898	+		Sama_1878	0.42	+0.9
2,293,898	+		Sama_1878	0.42	-1.9
2,293,898	+		Sama_1878	0.42	-0.0
2,293,898	+		Sama_1878	0.42	+0.4
2,293,899	-		Sama_1878	0.42	+0.3
2,293,899	-		Sama_1878	0.42	-1.2
2,293,899	-		Sama_1878	0.42	+0.9
2,293,899	-		Sama_1878	0.42	-0.1
2,293,902	+		Sama_1878	0.43	+2.3
2,293,902	+		Sama_1878	0.43	+0.9
2,293,902	+		Sama_1878	0.43	-0.8
2,293,902	+		Sama_1878	0.43	+0.1
2,293,902	+		Sama_1878	0.43	-1.9
2,293,903	-		Sama_1878	0.43	-0.5
2,293,929	+		Sama_1878	0.46	+0.8
2,293,967	+		Sama_1878	0.51	-0.8
2,293,967	+		Sama_1878	0.51	-0.7
2,293,968	-		Sama_1878	0.51	+1.1
2,293,968	-		Sama_1878	0.51	-0.8
2,294,011	+		Sama_1878	0.56	-0.9
2,294,011	+		Sama_1878	0.56	+0.0
2,294,012	-		Sama_1878	0.56	-1.6
2,294,012	-		Sama_1878	0.56	-0.0
2,294,021	-		Sama_1878	0.57	-0.1