Strain Fitness in Shewanella amazonensis SB2B around Sama_1874

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,287,027	+		Sama_1873	0.41	-2.3
2,287,037	+		Sama_1873	0.42	+0.0
2,287,054	-		Sama_1873	0.45	-0.4
2,287,073	+		Sama_1873	0.48	-0.6
2,287,074	-		Sama_1873	0.48	-1.2
2,287,081	-		Sama_1873	0.49	-0.7
2,287,115	-		Sama_1873	0.54	+0.1
2,287,142	+		Sama_1873	0.58	+2.0
2,287,163	-		Sama_1873	0.62	-0.0
2,287,182	+		Sama_1873	0.65	-0.6
2,287,183	-		Sama_1873	0.65	+1.6
2,287,183	-		Sama_1873	0.65	+1.1
2,287,190	-		Sama_1873	0.66	-0.1
2,287,225	-		Sama_1873	0.71	-1.8
2,287,257	+		Sama_1873	0.76	+1.4
2,287,294	+		Sama_1873	0.82	-3.0
2,287,339	-		Sama_1873	0.89	-0.6
2,287,339	-		Sama_1873	0.89	+0.4
2,287,351	-				+0.1
2,287,426	+				-0.6
2,287,426	+				+0.3
2,287,446	-				+0.6
2,287,453	+				+0.5
2,287,542	+				-0.8
2,287,549	+				+0.2
2,287,550	-				-1.0
2,287,794	-				-1.5
2,287,825	+				-0.1
2,287,836	-				-0.6
2,287,857	-				-0.9
2,287,857	-				+1.1
2,287,857	-				-1.2
2,287,929	+				+0.0
2,287,929	+				+0.2
2,287,930	-				-1.2
2,287,930	-				-0.0
2,287,931	+				-0.9
2,287,931	+				+0.7
2,287,931	+				-1.6
2,287,932	-				-0.1
2,287,968	+				-0.3
2,287,968	+				+0.9
2,287,968	+				-0.3
2,287,969	-				+1.0
2,287,969	-				-2.2
2,287,969	-				-0.9
2,287,969	-				-1.9
2,288,005	+				+0.1
2,288,006	-				-1.6
2,288,010	+				-0.2
2,288,117	+		Sama_1874	0.16	-0.6
2,288,118	-		Sama_1874	0.16	-0.7
2,288,118	-		Sama_1874	0.16	-1.5
2,288,118	-		Sama_1874	0.16	-0.9
2,288,194	-		Sama_1874	0.29	-0.5
2,288,256	+		Sama_1874	0.39	+0.6
2,288,371	+		Sama_1874	0.57	-0.5
2,288,371	+		Sama_1874	0.57	+0.2
2,288,371	+		Sama_1874	0.57	+0.4
2,288,372	-		Sama_1874	0.57	-0.0
2,288,409	-		Sama_1874	0.63	-0.7
2,288,576	+				-1.4
2,288,577	-				-0.8
2,288,654	-				+0.4
2,288,664	+				-0.9
2,288,742	-				-1.6
2,288,778	-				-0.9
2,288,804	+				-1.0
2,288,804	+				+0.4
2,288,805	-				-0.0
2,288,810	+				-1.4
2,288,854	+				+0.7
2,288,886	+		Sama_1875	0.10	-0.5
2,288,886	+		Sama_1875	0.10	-1.3
2,288,887	-		Sama_1875	0.10	+0.4
2,288,912	-		Sama_1875	0.11	+0.7
2,288,953	-		Sama_1875	0.13	+0.5
2,288,978	+		Sama_1875	0.14	-0.0
2,288,978	+		Sama_1875	0.14	-0.2
2,288,979	-		Sama_1875	0.14	+0.6
2,289,014	+		Sama_1875	0.15	+0.0
2,289,014	+		Sama_1875	0.15	+0.8
2,289,014	+		Sama_1875	0.15	+0.7
2,289,014	+		Sama_1875	0.15	-0.6
2,289,014	+		Sama_1875	0.15	-0.6
2,289,015	-		Sama_1875	0.15	-1.1
2,289,032	-		Sama_1875	0.16	-0.2
2,289,137	-		Sama_1875	0.20	-0.3
2,289,153	-		Sama_1875	0.21	-0.3
2,289,193	+		Sama_1875	0.23	+0.6
2,289,315	+		Sama_1875	0.28	-2.0
2,289,323	+		Sama_1875	0.28	-0.7
2,289,324	-		Sama_1875	0.28	-1.5
2,289,324	-		Sama_1875	0.28	+0.1
2,289,325	+		Sama_1875	0.28	-0.0
2,289,325	+		Sama_1875	0.28	-1.2
2,289,325	+		Sama_1875	0.28	-0.1
2,289,326	-		Sama_1875	0.28	-0.7
2,289,326	-		Sama_1875	0.28	-1.2
2,289,395	-		Sama_1875	0.31	-0.5
2,289,563	-		Sama_1875	0.38	+2.6
2,289,564	-		Sama_1875	0.38	-1.0