Strain Fitness in Shewanella amazonensis SB2B around Sama_1827

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,222,615	+		Sama_1825	0.87	+0.1
2,222,663	-				-0.8
2,222,740	+				+0.4
2,222,741	-				-0.7
2,222,742	+				-0.4
2,222,742	+				-0.1
2,222,743	-				-1.6
2,222,794	+				-1.2
2,222,794	+				+0.7
2,222,795	-				-1.0
2,222,795	-				-1.2
2,222,822	-				-1.2
2,222,826	+				+0.6
2,222,826	+				+0.3
2,222,826	+				-1.3
2,222,826	+				-0.5
2,222,826	+				+1.0
2,222,826	+				-0.2
2,222,826	+				+0.6
2,222,827	-				+0.8
2,222,827	-				-1.6
2,222,827	-				+1.4
2,222,827	-				-0.4
2,222,827	-				-0.6
2,222,827	-				-0.7
2,222,827	-				+0.4
2,222,827	-				+0.2
2,222,827	-				+0.4
2,222,828	+				+0.3
2,222,828	+				-0.8
2,222,829	-				+1.1
2,223,041	+		Sama_1826	0.26	+2.0
2,223,159	+		Sama_1826	0.43	-1.6
2,223,187	+		Sama_1826	0.47	-1.6
2,223,188	-		Sama_1826	0.47	-2.2
2,223,188	-		Sama_1826	0.47	-1.6
2,223,188	-		Sama_1826	0.47	-1.9
2,223,228	-		Sama_1826	0.53	-0.0
2,223,401	+		Sama_1826	0.78	-0.3
2,223,424	+		Sama_1826	0.81	+0.6
2,223,496	+				+0.1
2,223,496	+				-0.4
2,223,518	+				-0.2
2,223,518	+				-0.8
2,223,530	+				+0.4
2,223,589	+				+0.4
2,224,154	+				-0.1
2,224,187	-				+0.1
2,224,187	-				+1.6
2,224,190	+				+0.1
2,224,190	+				-0.9
2,224,190	+				+1.0
2,224,190	+				-0.9
2,224,191	-				+0.7
2,224,378	+				-1.8
2,224,378	+				+0.2
2,224,379	-				+0.0
2,224,379	-				+0.4
2,224,423	-				-0.5
2,224,427	-				+0.4
2,224,427	-				-0.3
2,224,427	-				-0.2
2,224,427	-				+1.1
2,224,486	+		Sama_1828	0.11	+0.7
2,224,486	+		Sama_1828	0.11	-0.7
2,224,487	-		Sama_1828	0.11	-0.2
2,224,487	-		Sama_1828	0.11	-1.2
2,224,611	+		Sama_1828	0.17	+1.4
2,224,612	-		Sama_1828	0.17	+0.4
2,224,615	-		Sama_1828	0.17	+1.0
2,224,781	-		Sama_1828	0.25	-0.4
2,224,787	-		Sama_1828	0.26	+0.4
2,224,787	-		Sama_1828	0.26	-0.2
2,224,787	-		Sama_1828	0.26	-0.3
2,224,870	-		Sama_1828	0.30	-0.3
2,224,978	+		Sama_1828	0.35	-0.2
2,224,979	-		Sama_1828	0.35	-0.3
2,224,979	-		Sama_1828	0.35	-1.6
2,225,009	-		Sama_1828	0.37	+0.4
2,225,048	-		Sama_1828	0.39	-0.5
2,225,087	+		Sama_1828	0.41	+0.1
2,225,088	-		Sama_1828	0.41	+0.5
2,225,088	-		Sama_1828	0.41	+1.4