Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1709 and Sama_1710 are separated by 3 nucleotides Sama_1710 and Sama_1711 are separated by 9 nucleotides
Sama_1709: Sama_1709 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq), at 2,088,734 to 2,089,912
_1709
Sama_1710: Sama_1710 - alpha keto acid dehydrogenase complex, E1 component, beta subunit (RefSeq), at 2,089,916 to 2,090,893
_1710
Sama_1711: Sama_1711 - dihydrolipoamide acetyltransferase (RefSeq), at 2,090,903 to 2,092,486
_1711
Position (kb)
2089
2090
2091 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2088.968 kb on + strand, within Sama_1709 at 2088.969 kb on - strand, within Sama_1709 at 2088.969 kb on - strand, within Sama_1709 at 2089.049 kb on + strand, within Sama_1709 at 2089.099 kb on + strand, within Sama_1709 at 2089.182 kb on - strand, within Sama_1709 at 2089.265 kb on - strand, within Sama_1709 at 2089.273 kb on + strand, within Sama_1709 at 2089.280 kb on + strand, within Sama_1709 at 2089.280 kb on + strand, within Sama_1709 at 2089.281 kb on - strand, within Sama_1709 at 2089.448 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.459 kb on + strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.460 kb on - strand, within Sama_1709 at 2089.462 kb on + strand, within Sama_1709 at 2089.483 kb on + strand, within Sama_1709 at 2089.484 kb on - strand, within Sama_1709 at 2089.484 kb on - strand, within Sama_1709 at 2089.568 kb on + strand, within Sama_1709 at 2089.568 kb on + strand, within Sama_1709 at 2089.569 kb on - strand, within Sama_1709 at 2089.569 kb on - strand, within Sama_1709 at 2089.569 kb on - strand, within Sama_1709 at 2089.721 kb on + strand, within Sama_1709 at 2089.811 kb on + strand at 2089.930 kb on + strand at 2089.931 kb on - strand at 2089.990 kb on - strand at 2090.053 kb on + strand, within Sama_1710 at 2090.171 kb on + strand, within Sama_1710 at 2090.172 kb on - strand, within Sama_1710 at 2090.233 kb on + strand, within Sama_1710 at 2090.261 kb on + strand, within Sama_1710 at 2090.300 kb on + strand, within Sama_1710 at 2090.324 kb on + strand, within Sama_1710 at 2090.325 kb on - strand, within Sama_1710 at 2090.358 kb on + strand, within Sama_1710 at 2090.447 kb on + strand, within Sama_1710 at 2090.483 kb on + strand, within Sama_1710 at 2090.838 kb on - strand at 2090.838 kb on - strand at 2090.891 kb on + strand at 2090.891 kb on + strand at 2090.903 kb on - strand at 2090.908 kb on + strand at 2090.918 kb on - strand at 2090.989 kb on + strand at 2090.989 kb on + strand at 2090.990 kb on - strand at 2091.040 kb on - strand at 2091.066 kb on + strand, within Sama_1711 at 2091.066 kb on + strand, within Sama_1711 at 2091.066 kb on + strand, within Sama_1711 at 2091.122 kb on + strand, within Sama_1711 at 2091.122 kb on + strand, within Sama_1711 at 2091.405 kb on + strand, within Sama_1711 at 2091.458 kb on + strand, within Sama_1711 at 2091.459 kb on - strand, within Sama_1711 at 2091.668 kb on + strand, within Sama_1711 at 2091.670 kb on + strand, within Sama_1711 at 2091.670 kb on + strand, within Sama_1711 at 2091.670 kb on + strand, within Sama_1711 at 2091.679 kb on + strand, within Sama_1711 at 2091.681 kb on + strand, within Sama_1711 at 2091.681 kb on + strand, within Sama_1711 at 2091.681 kb on + strand, within Sama_1711 at 2091.681 kb on + strand, within Sama_1711 at 2091.681 kb on + strand, within Sama_1711 at 2091.681 kb on + strand, within Sama_1711 at 2091.682 kb on - strand, within Sama_1711 at 2091.682 kb on - strand, within Sama_1711 at 2091.682 kb on - strand, within Sama_1711 at 2091.690 kb on - strand, within Sama_1711 at 2091.751 kb on - strand, within Sama_1711 at 2091.869 kb on + strand, within Sama_1711 at 2091.869 kb on + strand, within Sama_1711
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 2,088,968 + Sama_1709 0.20 -0.6 2,088,969 - Sama_1709 0.20 -0.6 2,088,969 - Sama_1709 0.20 +0.4 2,089,049 + Sama_1709 0.27 +0.4 2,089,099 + Sama_1709 0.31 -0.2 2,089,182 - Sama_1709 0.38 -0.6 2,089,265 - Sama_1709 0.45 +0.4 2,089,273 + Sama_1709 0.46 +0.0 2,089,280 + Sama_1709 0.46 -0.8 2,089,280 + Sama_1709 0.46 +1.0 2,089,281 - Sama_1709 0.46 -1.6 2,089,448 + Sama_1709 0.61 -1.0 2,089,459 + Sama_1709 0.61 +0.4 2,089,459 + Sama_1709 0.61 -0.6 2,089,459 + Sama_1709 0.61 +0.4 2,089,459 + Sama_1709 0.61 -0.9 2,089,459 + Sama_1709 0.61 -1.2 2,089,459 + Sama_1709 0.61 -0.3 2,089,459 + Sama_1709 0.61 -0.6 2,089,460 - Sama_1709 0.62 -1.2 2,089,460 - Sama_1709 0.62 +0.4 2,089,460 - Sama_1709 0.62 +1.0 2,089,460 - Sama_1709 0.62 -1.2 2,089,460 - Sama_1709 0.62 -1.6 2,089,460 - Sama_1709 0.62 +0.4 2,089,460 - Sama_1709 0.62 +0.0 2,089,462 + Sama_1709 0.62 +0.4 2,089,483 + Sama_1709 0.64 -0.3 2,089,484 - Sama_1709 0.64 -1.9 2,089,484 - Sama_1709 0.64 -0.3 2,089,568 + Sama_1709 0.71 +0.4 2,089,568 + Sama_1709 0.71 -1.6 2,089,569 - Sama_1709 0.71 -0.2 2,089,569 - Sama_1709 0.71 +0.0 2,089,569 - Sama_1709 0.71 -1.6 2,089,721 + Sama_1709 0.84 -1.2 2,089,811 + +2.0 2,089,930 + +0.0 2,089,931 - -0.5 2,089,990 - -1.9 2,090,053 + Sama_1710 0.14 -0.6 2,090,171 + Sama_1710 0.26 -0.3 2,090,172 - Sama_1710 0.26 -2.2 2,090,233 + Sama_1710 0.32 -0.6 2,090,261 + Sama_1710 0.35 -1.2 2,090,300 + Sama_1710 0.39 -0.6 2,090,324 + Sama_1710 0.42 +1.3 2,090,325 - Sama_1710 0.42 -0.3 2,090,358 + Sama_1710 0.45 -0.2 2,090,447 + Sama_1710 0.54 +1.7 2,090,483 + Sama_1710 0.58 -2.2 2,090,838 - -0.2 2,090,838 - -2.9 2,090,891 + -2.2 2,090,891 + -0.6 2,090,903 - +0.0 2,090,908 + -1.0 2,090,918 - -0.2 2,090,989 + -0.6 2,090,989 + -1.6 2,090,990 - -0.6 2,091,040 - +2.0 2,091,066 + Sama_1711 0.10 -0.9 2,091,066 + Sama_1711 0.10 +0.4 2,091,066 + Sama_1711 0.10 -0.5 2,091,122 + Sama_1711 0.14 +0.1 2,091,122 + Sama_1711 0.14 +1.0 2,091,405 + Sama_1711 0.32 -1.9 2,091,458 + Sama_1711 0.35 +0.4 2,091,459 - Sama_1711 0.35 -0.3 2,091,668 + Sama_1711 0.48 +0.4 2,091,670 + Sama_1711 0.48 -1.9 2,091,670 + Sama_1711 0.48 -1.9 2,091,670 + Sama_1711 0.48 -0.6 2,091,679 + Sama_1711 0.49 -0.2 2,091,681 + Sama_1711 0.49 -1.7 2,091,681 + Sama_1711 0.49 +1.0 2,091,681 + Sama_1711 0.49 -0.6 2,091,681 + Sama_1711 0.49 -1.6 2,091,681 + Sama_1711 0.49 -1.2 2,091,681 + Sama_1711 0.49 -0.3 2,091,682 - Sama_1711 0.49 +0.6 2,091,682 - Sama_1711 0.49 -0.6 2,091,682 - Sama_1711 0.49 -1.6 2,091,690 - Sama_1711 0.50 -1.2 2,091,751 - Sama_1711 0.54 +2.0 2,091,869 + Sama_1711 0.61 +0.7 2,091,869 + Sama_1711 0.61 +1.6
Or see this region's nucleotide sequence