Strain Fitness in Shewanella amazonensis SB2B around Sama_1709

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,087,791	+		Sama_1708	0.24	-1.6
2,087,826	-		Sama_1708	0.28	-0.8
2,087,955	+		Sama_1708	0.40	-2.6
2,087,956	-		Sama_1708	0.40	-1.6
2,087,956	-		Sama_1708	0.40	+0.4
2,088,044	+		Sama_1708	0.49	-1.2
2,088,063	-		Sama_1708	0.50	-0.7
2,088,215	-		Sama_1708	0.65	-1.6
2,088,448	+		Sama_1708	0.87	+0.4
2,088,563	-				+0.8
2,088,580	-				-0.0
2,088,597	-				-2.2
2,088,597	-				-1.2
2,088,597	-				-0.2
2,088,632	+				+0.3
2,088,638	-				+3.0
2,088,685	+				-0.4
2,088,689	+				+0.2
2,088,689	+				+0.0
2,088,689	+				-0.6
2,088,690	-				-1.2
2,088,690	-				-1.7
2,088,719	+				-3.0
2,088,733	+				-0.2
2,088,734	-				+0.2
2,088,734	-				-0.2
2,088,843	-				-2.4
2,088,894	-		Sama_1709	0.14	-1.2
2,088,910	+		Sama_1709	0.15	-0.4
2,088,968	+		Sama_1709	0.20	-0.6
2,088,969	-		Sama_1709	0.20	-0.6
2,088,969	-		Sama_1709	0.20	+0.4
2,089,049	+		Sama_1709	0.27	+0.4
2,089,099	+		Sama_1709	0.31	-0.2
2,089,182	-		Sama_1709	0.38	-0.6
2,089,265	-		Sama_1709	0.45	+0.4
2,089,273	+		Sama_1709	0.46	+0.0
2,089,280	+		Sama_1709	0.46	-0.8
2,089,280	+		Sama_1709	0.46	+1.0
2,089,281	-		Sama_1709	0.46	-1.6
2,089,448	+		Sama_1709	0.61	-1.0
2,089,459	+		Sama_1709	0.61	+0.4
2,089,459	+		Sama_1709	0.61	-0.6
2,089,459	+		Sama_1709	0.61	+0.4
2,089,459	+		Sama_1709	0.61	-0.9
2,089,459	+		Sama_1709	0.61	-1.2
2,089,459	+		Sama_1709	0.61	-0.3
2,089,459	+		Sama_1709	0.61	-0.6
2,089,460	-		Sama_1709	0.62	-1.2
2,089,460	-		Sama_1709	0.62	+0.4
2,089,460	-		Sama_1709	0.62	+1.0
2,089,460	-		Sama_1709	0.62	-1.2
2,089,460	-		Sama_1709	0.62	-1.6
2,089,460	-		Sama_1709	0.62	+0.4
2,089,460	-		Sama_1709	0.62	+0.0
2,089,462	+		Sama_1709	0.62	+0.4
2,089,483	+		Sama_1709	0.64	-0.3
2,089,484	-		Sama_1709	0.64	-1.9
2,089,484	-		Sama_1709	0.64	-0.3
2,089,568	+		Sama_1709	0.71	+0.4
2,089,568	+		Sama_1709	0.71	-1.6
2,089,569	-		Sama_1709	0.71	-0.2
2,089,569	-		Sama_1709	0.71	+0.0
2,089,569	-		Sama_1709	0.71	-1.6
2,089,721	+		Sama_1709	0.84	-1.2
2,089,811	+				+2.0
2,089,930	+				+0.0
2,089,931	-				-0.5
2,089,990	-				-1.9
2,090,053	+		Sama_1710	0.14	-0.6
2,090,171	+		Sama_1710	0.26	-0.3
2,090,172	-		Sama_1710	0.26	-2.2
2,090,233	+		Sama_1710	0.32	-0.6
2,090,261	+		Sama_1710	0.35	-1.2
2,090,300	+		Sama_1710	0.39	-0.6
2,090,324	+		Sama_1710	0.42	+1.3
2,090,325	-		Sama_1710	0.42	-0.3
2,090,358	+		Sama_1710	0.45	-0.2
2,090,447	+		Sama_1710	0.54	+1.7
2,090,483	+		Sama_1710	0.58	-2.2
2,090,838	-				-0.2
2,090,838	-				-2.9
2,090,891	+				-2.2
2,090,891	+				-0.6
2,090,903	-				+0.0
2,090,908	+				-1.0