Strain Fitness in Shewanella amazonensis SB2B around Sama_1654

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
2,018,065	+		Sama_1653	0.60	-0.0
2,018,077	+		Sama_1653	0.61	+1.0
2,018,077	+		Sama_1653	0.61	-0.6
2,018,077	+		Sama_1653	0.61	-0.3
2,018,077	+		Sama_1653	0.61	-0.8
2,018,080	+		Sama_1653	0.61	+0.9
2,018,081	-		Sama_1653	0.61	+0.4
2,018,081	-		Sama_1653	0.61	-1.6
2,018,134	+		Sama_1653	0.65	+1.2
2,018,135	-		Sama_1653	0.65	+0.7
2,018,146	+		Sama_1653	0.65	+0.4
2,018,146	+		Sama_1653	0.65	+0.4
2,018,146	+		Sama_1653	0.65	-0.4
2,018,285	+		Sama_1653	0.74	-0.6
2,018,419	+		Sama_1653	0.82	-1.1
2,018,419	+		Sama_1653	0.82	+1.4
2,018,419	+		Sama_1653	0.82	+0.0
2,018,419	+		Sama_1653	0.82	-1.6
2,018,420	-		Sama_1653	0.82	-1.4
2,018,420	-		Sama_1653	0.82	-0.1
2,018,420	-		Sama_1653	0.82	+0.1
2,018,425	-		Sama_1653	0.83	-0.1
2,018,455	+		Sama_1653	0.85	-0.1
2,018,455	+		Sama_1653	0.85	+0.3
2,018,528	+		Sama_1653	0.89	-0.8
2,018,595	+				-0.9
2,018,595	+				-0.4
2,018,595	+				+0.1
2,018,595	+				-0.8
2,018,595	+				+0.7
2,018,596	-				+0.9
2,018,596	-				-0.1
2,018,596	-				-1.1
2,018,611	+				-0.5
2,018,612	-				+1.0
2,018,672	+				-0.6
2,018,673	-				-0.6
2,018,740	+				-0.8
2,018,747	+				+0.1
2,018,747	+				-0.1
2,018,747	+				+0.1
2,018,747	+				-0.0
2,018,747	+				+0.2
2,018,751	+				-0.6
2,018,751	+				-0.6
2,018,751	+				-0.6
2,018,751	+				+0.1
2,018,751	+				+0.3
2,018,751	+				-0.8
2,018,751	+				-0.1
2,018,751	+				+2.0
2,018,752	-				-0.4
2,018,752	-				-0.1
2,018,752	-				-1.2
2,018,752	-				+1.8
2,018,752	-				-0.6
2,018,865	+				-0.6
2,018,865	+				-0.3
2,018,865	+				-1.6
2,018,866	-				+0.0
2,018,872	+				+0.2
2,018,872	+				-0.8
2,018,872	+				-1.9
2,018,872	+				-0.6
2,018,872	+				+2.0
2,018,873	-				-0.9
2,018,873	-				-0.4
2,018,873	-				+2.3
2,018,873	-				-0.2
2,018,875	-				-0.9
2,019,023	+				-1.7
2,019,023	+				+1.0
2,019,024	-				-2.4
2,019,024	-				-0.4
2,019,027	+				-0.6
2,019,027	+				-0.6
2,019,028	-				-0.1
2,019,028	-				-0.7
2,019,041	+				+0.1
2,019,041	+				+2.2
2,019,041	+				-0.6
2,019,041	+				+0.9
2,019,041	+				+0.9
2,019,042	-				+0.1
2,019,042	-				+0.2
2,019,126	+		Sama_1654	0.17	-1.0
2,019,144	-		Sama_1654	0.20	+0.4
2,019,244	+		Sama_1654	0.34	+0.8
2,019,244	+		Sama_1654	0.34	-0.7
2,019,246	+		Sama_1654	0.35	+1.0
2,019,246	+		Sama_1654	0.35	+0.1
2,019,246	+		Sama_1654	0.35	-1.5
2,019,247	-		Sama_1654	0.35	-0.3
2,019,247	-		Sama_1654	0.35	-1.7
2,019,328	-		Sama_1654	0.47	-1.9
2,019,483	+		Sama_1654	0.69	+0.3
2,019,484	-		Sama_1654	0.69	-1.6
2,019,647	+				-0.1
2,019,647	+				-0.7
2,019,648	-				-0.6
2,019,691	+				-0.6
2,019,704	+				-0.4
2,019,706	+				-0.5
2,019,706	+				-0.9
2,019,727	+				-1.0
2,019,779	+				-1.1
2,019,779	+				+2.9
2,019,780	-				-1.1
2,019,782	-				-0.7
2,019,796	+				-0.9
2,019,935	-		Sama_1655	0.19	+0.4
2,019,939	-		Sama_1655	0.19	-1.3
2,019,939	-		Sama_1655	0.19	-1.6
2,020,037	-		Sama_1655	0.28	-1.1
2,020,066	+		Sama_1655	0.30	+0.4
2,020,066	+		Sama_1655	0.30	-2.1
2,020,066	+		Sama_1655	0.30	-0.1
2,020,066	+		Sama_1655	0.30	-0.8
2,020,067	-		Sama_1655	0.31	+1.0
2,020,067	-		Sama_1655	0.31	-0.4
2,020,078	+		Sama_1655	0.32	-3.3
2,020,145	+		Sama_1655	0.38	-2.1
2,020,145	+		Sama_1655	0.38	-1.1
2,020,172	-		Sama_1655	0.40	-0.6
2,020,174	+		Sama_1655	0.40	-0.4
2,020,205	+		Sama_1655	0.43	-0.0
2,020,206	-		Sama_1655	0.43	+0.2
2,020,206	-		Sama_1655	0.43	+0.1
2,020,320	+		Sama_1655	0.53	-0.5
2,020,320	+		Sama_1655	0.53	-0.0
2,020,323	+		Sama_1655	0.54	+0.6
2,020,323	+		Sama_1655	0.54	-2.3
2,020,324	-		Sama_1655	0.54	+0.1
2,020,338	+		Sama_1655	0.55	+0.1
2,020,338	+		Sama_1655	0.55	+0.0
2,020,339	-		Sama_1655	0.55	-2.0
2,020,435	+		Sama_1655	0.64	-0.6
2,020,435	+		Sama_1655	0.64	-0.1
2,020,436	-		Sama_1655	0.64	+0.2
2,020,522	+		Sama_1655	0.72	+0.4
2,020,643	+		Sama_1655	0.83	-0.1
2,020,643	+		Sama_1655	0.83	-0.6
2,020,644	-		Sama_1655	0.83	-0.9
2,020,651	+		Sama_1655	0.84	-0.0
2,020,687	+		Sama_1655	0.87	-0.5
2,020,687	+		Sama_1655	0.87	-0.0
2,020,687	+		Sama_1655	0.87	-0.3
2,020,688	-		Sama_1655	0.87	-0.5