Strain Fitness in Shewanella amazonensis SB2B around Sama_R0051

Experiment: Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_R0050 and Sama_R0051 are separated by 70 nucleotidesSama_R0051 and Sama_R0052 are separated by 120 nucleotidesSama_R0052 and Sama_R0053 are separated by 276 nucleotides Sama_R0050: Sama_R0050 - 16S ribosomal RNA (RefSeq), at 1,867,547 to 1,869,083 _R0050 Sama_R0051: Sama_R0051 - tRNA-Ile (RefSeq), at 1,869,154 to 1,869,230 _R0051 Sama_R0052: Sama_R0052 - tRNA-Ala (RefSeq), at 1,869,351 to 1,869,426 _R0052 Sama_R0053: Sama_R0053 - 23S ribosomal RNA (RefSeq), at 1,869,703 to 1,872,616 _R0053 Position (kb) 1869 1870Strain fitness (log2 ratio) -1 0 1at 1869.311 kb on + strandat 1869.311 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
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1,869,311 + +0.2
1,869,311 + +0.5

Or see this region's nucleotide sequence