Strain Fitness in Shewanella amazonensis SB2B around Sama_1493

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
1,805,916	+				-0.5
1,805,922	+				+0.2
1,805,923	-				-1.4
1,805,923	-				+1.9
1,806,011	-				-0.4
1,806,027	+		Sama_1492	0.12	-0.2
1,806,028	-		Sama_1492	0.12	+0.2
1,806,109	-		Sama_1492	0.49	+1.3
1,806,110	-		Sama_1492	0.50	-0.3
1,806,110	-		Sama_1492	0.50	+0.5
1,806,172	+		Sama_1492	0.78	+0.4
1,806,173	-		Sama_1492	0.79	-0.1
1,806,173	-		Sama_1492	0.79	+0.5
1,806,173	-		Sama_1492	0.79	-0.9
1,806,175	-		Sama_1492	0.79	+0.2
1,806,175	-		Sama_1492	0.79	+0.1
1,806,219	+				-0.7
1,806,219	+				+0.3
1,806,245	+				-1.1
1,806,250	-				+0.5
1,806,414	+				+0.1
1,806,415	-				-1.7
1,806,498	-				+1.1
1,806,542	+				-0.2
1,806,562	+				-0.1
1,806,599	+				+0.5
1,806,599	+				-0.5
1,806,600	-				-1.1
1,806,693	+				+1.3
1,806,693	+				-0.0
1,806,693	+				-0.7
1,806,696	+				-1.8
1,806,696	+				+0.2
1,806,696	+				+1.0
1,806,696	+				-0.7
1,806,697	-				-0.5
1,806,697	-				-0.2
1,806,806	+				+0.8
1,806,931	-		Sama_1493	0.17	-0.6
1,806,975	+		Sama_1493	0.27	-1.5
1,806,976	-		Sama_1493	0.27	-0.1
1,807,076	+		Sama_1493	0.50	-0.3
1,807,077	-		Sama_1493	0.50	-0.5
1,807,100	+		Sama_1493	0.55	-0.6
1,807,100	+		Sama_1493	0.55	-0.8
1,807,174	+		Sama_1493	0.72	+0.3
1,807,174	+		Sama_1493	0.72	-0.3
1,807,174	+		Sama_1493	0.72	-1.5
1,807,175	-		Sama_1493	0.72	+0.5
1,807,175	-		Sama_1493	0.72	-0.7
1,807,326	-				+0.8
1,807,352	-				-1.1
1,807,398	+				-0.7
1,807,398	+				-2.2
1,807,425	-				-1.9
1,807,466	+				-0.8
1,807,467	-				+0.5
1,807,547	+				-0.6
1,807,599	+				-0.5
1,807,600	-				+0.3
1,807,617	+				-0.7
1,807,617	+				-0.1
1,807,687	+				+0.3
1,807,687	+				+0.2
1,807,688	-				+0.5
1,807,688	-				-0.6
1,807,690	+				+2.1
1,807,690	+				-0.1
1,807,691	-				-0.5
1,807,710	-				+0.7
1,807,729	+				-1.5
1,807,796	+				-0.2
1,807,805	+				-0.6
1,807,805	+				-0.3
1,807,805	+				+0.5
1,807,806	-				+0.9
1,807,838	+				-0.6
1,807,839	-				+0.9
1,807,840	+				-1.8
1,807,840	+				-0.3
1,807,840	+				+0.6
1,807,841	-				-0.7
1,807,841	-				+0.9
1,807,841	-				-0.5
1,807,841	-				-0.4
1,807,841	-				-1.3
1,807,841	-				-0.9
1,807,951	+		Sama_1494	0.12	-0.5
1,807,952	-		Sama_1494	0.12	+0.0
1,807,952	-		Sama_1494	0.12	+0.0
1,808,007	-		Sama_1494	0.15	+0.1
1,808,059	+		Sama_1494	0.17	-0.3
1,808,059	+		Sama_1494	0.17	-2.1
1,808,060	-		Sama_1494	0.17	-0.1
1,808,064	+		Sama_1494	0.18	-0.5
1,808,064	+		Sama_1494	0.18	+0.5
1,808,064	+		Sama_1494	0.18	-0.3
1,808,065	-		Sama_1494	0.18	+0.1
1,808,065	-		Sama_1494	0.18	+0.2
1,808,176	+		Sama_1494	0.23	-0.6
1,808,177	-		Sama_1494	0.23	+1.5
1,808,246	+		Sama_1494	0.26	+0.2
1,808,247	-		Sama_1494	0.26	-0.7
1,808,274	-		Sama_1494	0.27	-0.2