Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt valS and Sama_0791 are separated by 15 nucleotides Sama_0791 and Sama_0792 are separated by 130 nucleotides Sama_0792 and Sama_0793 are separated by 119 nucleotides
Sama_0790: valS - valyl-tRNA synthetase (RefSeq), at 973,085 to 975,946
valS
Sama_0791: Sama_0791 - DNA polymerase III, chi subunit (RefSeq), at 975,962 to 976,417
_0791
Sama_0792: Sama_0792 - TetR family transcriptional regulator (RefSeq), at 976,548 to 977,186
_0792
Sama_0793: Sama_0793 - outer membrane protein RomA (RefSeq), at 977,306 to 978,382
_0793
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 975.969 kb on - strand at 976.119 kb on - strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.307 kb on - strand, within Sama_0791 at 976.307 kb on - strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.394 kb on + strand at 976.394 kb on + strand at 976.394 kb on + strand at 976.395 kb on - strand at 976.395 kb on - strand at 976.395 kb on - strand at 976.398 kb on + strand at 976.398 kb on + strand at 976.398 kb on + strand at 976.399 kb on - strand at 976.399 kb on - strand at 976.433 kb on - strand at 976.433 kb on - strand at 976.448 kb on - strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.455 kb on - strand at 976.455 kb on - strand at 976.455 kb on - strand at 976.467 kb on + strand at 976.468 kb on - strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.489 kb on + strand at 976.489 kb on + strand at 976.489 kb on + strand at 976.549 kb on + strand at 976.549 kb on + strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.563 kb on + strand at 976.567 kb on + strand at 976.568 kb on - strand at 976.568 kb on - strand at 976.673 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.737 kb on - strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.823 kb on + strand, within Sama_0792 at 976.823 kb on + strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.897 kb on - strand, within Sama_0792 at 976.897 kb on - strand, within Sama_0792 at 976.941 kb on + strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 977.021 kb on + strand, within Sama_0792 at 977.023 kb on + strand, within Sama_0792 at 977.023 kb on + strand, within Sama_0792 at 977.023 kb on + strand, within Sama_0792 at 977.023 kb on + strand, within Sama_0792 at 977.024 kb on - strand, within Sama_0792 at 977.024 kb on - strand, within Sama_0792 at 977.024 kb on - strand, within Sama_0792 at 977.024 kb on - strand, within Sama_0792 at 977.024 kb on - strand, within Sama_0792 at 977.024 kb on - strand, within Sama_0792 at 977.082 kb on + strand, within Sama_0792 at 977.121 kb on + strand, within Sama_0792 at 977.121 kb on + strand, within Sama_0792 at 977.121 kb on + strand, within Sama_0792 at 977.122 kb on - strand, within Sama_0792 at 977.190 kb on - strand at 977.237 kb on + strand at 977.277 kb on + strand at 977.302 kb on + strand at 977.302 kb on + strand at 977.302 kb on + strand at 977.302 kb on + strand at 977.303 kb on - strand at 977.303 kb on - strand at 977.303 kb on - strand at 977.303 kb on - strand at 977.353 kb on + strand at 977.356 kb on + strand at 977.357 kb on - strand at 977.369 kb on + strand at 977.369 kb on + strand at 977.370 kb on - strand at 977.370 kb on - strand at 977.370 kb on - strand at 977.370 kb on - strand at 977.411 kb on + strand at 977.411 kb on + strand at 977.411 kb on + strand at 977.412 kb on - strand at 977.505 kb on + strand, within Sama_0793 at 977.506 kb on - strand, within Sama_0793 at 977.507 kb on + strand, within Sama_0793 at 977.508 kb on - strand, within Sama_0793 at 977.537 kb on + strand, within Sama_0793 at 977.537 kb on + strand, within Sama_0793 at 977.538 kb on - strand, within Sama_0793 at 977.538 kb on - strand, within Sama_0793 at 977.538 kb on - strand, within Sama_0793 at 977.538 kb on - strand, within Sama_0793 at 977.571 kb on + strand, within Sama_0793 at 977.571 kb on + strand, within Sama_0793 at 977.572 kb on - strand, within Sama_0793 at 977.572 kb on - strand, within Sama_0793 at 977.687 kb on + strand, within Sama_0793 at 977.713 kb on + strand, within Sama_0793 at 977.714 kb on - strand, within Sama_0793 at 977.734 kb on - strand, within Sama_0793 at 977.734 kb on - strand, within Sama_0793 at 977.734 kb on - strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.744 kb on + strand, within Sama_0793 at 977.745 kb on - strand, within Sama_0793 at 977.745 kb on - strand, within Sama_0793 at 977.745 kb on - strand, within Sama_0793 at 977.745 kb on - strand, within Sama_0793 at 977.745 kb on - strand, within Sama_0793 at 977.745 kb on - strand, within Sama_0793 at 977.746 kb on + strand, within Sama_0793 at 977.746 kb on + strand, within Sama_0793 at 977.746 kb on + strand, within Sama_0793 at 977.747 kb on - strand, within Sama_0793 at 977.747 kb on - strand, within Sama_0793 at 977.791 kb on + strand, within Sama_0793 at 977.792 kb on - strand, within Sama_0793 at 977.792 kb on - strand, within Sama_0793 at 977.802 kb on + strand, within Sama_0793 at 977.802 kb on + strand, within Sama_0793 at 977.829 kb on + strand, within Sama_0793 at 977.844 kb on + strand, within Sama_0793 at 977.844 kb on + strand, within Sama_0793 at 977.844 kb on + strand, within Sama_0793 at 977.845 kb on - strand, within Sama_0793 at 977.845 kb on - strand, within Sama_0793 at 977.845 kb on - strand, within Sama_0793 at 977.845 kb on - strand, within Sama_0793 at 978.007 kb on - strand, within Sama_0793 at 978.064 kb on + strand, within Sama_0793 at 978.065 kb on - strand, within Sama_0793 at 978.110 kb on - strand, within Sama_0793
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 975,969 - +0.7 976,119 - Sama_0791 0.34 +0.7 976,306 + Sama_0791 0.75 -0.8 976,306 + Sama_0791 0.75 -0.9 976,306 + Sama_0791 0.75 +0.3 976,307 - Sama_0791 0.76 -0.6 976,307 - Sama_0791 0.76 -2.1 976,308 + Sama_0791 0.76 +0.7 976,308 + Sama_0791 0.76 -0.5 976,308 + Sama_0791 0.76 -0.5 976,309 - Sama_0791 0.76 -0.6 976,309 - Sama_0791 0.76 -0.5 976,309 - Sama_0791 0.76 +0.5 976,394 + -0.6 976,394 + +0.0 976,394 + -0.5 976,395 - -1.2 976,395 - -1.2 976,395 - +0.6 976,398 + -1.0 976,398 + +0.9 976,398 + -1.1 976,399 - -0.8 976,399 - -2.1 976,433 - -1.4 976,433 - -1.3 976,448 - +0.2 976,454 + -1.0 976,454 + -1.4 976,454 + -1.1 976,454 + -0.4 976,454 + -0.2 976,454 + +1.0 976,455 - +1.1 976,455 - +0.4 976,455 - -0.1 976,467 + -0.8 976,468 - -0.1 976,472 + -0.3 976,472 + -0.0 976,472 + +0.9 976,472 + -1.4 976,473 - -0.0 976,473 - -0.2 976,473 - +0.2 976,473 - +0.7 976,473 - -0.4 976,473 - -2.3 976,489 + -0.1 976,489 + -0.3 976,489 + +0.3 976,549 + +0.2 976,549 + +0.6 976,550 - +0.4 976,550 - +0.5 976,550 - +1.0 976,550 - -0.1 976,550 - -0.6 976,550 - -0.2 976,563 + +1.4 976,567 + +2.6 976,568 - +3.0 976,568 - +2.5 976,673 + Sama_0792 0.20 +2.6 976,691 + Sama_0792 0.22 +1.2 976,691 + Sama_0792 0.22 +2.7 976,691 + Sama_0792 0.22 +0.7 976,691 + Sama_0792 0.22 +1.5 976,691 + Sama_0792 0.22 +2.6 976,691 + Sama_0792 0.22 +1.9 976,692 - Sama_0792 0.23 +2.2 976,692 - Sama_0792 0.23 +2.0 976,692 - Sama_0792 0.23 +2.5 976,692 - Sama_0792 0.23 +2.5 976,692 - Sama_0792 0.23 +3.0 976,737 - Sama_0792 0.30 +2.6 976,802 + Sama_0792 0.40 +1.2 976,802 + Sama_0792 0.40 +2.9 976,802 + Sama_0792 0.40 +1.5 976,803 - Sama_0792 0.40 +2.4 976,803 - Sama_0792 0.40 +2.9 976,803 - Sama_0792 0.40 +2.9 976,803 - Sama_0792 0.40 +1.7 976,823 + Sama_0792 0.43 +2.1 976,823 + Sama_0792 0.43 +1.9 976,824 - Sama_0792 0.43 +3.1 976,824 - Sama_0792 0.43 +1.2 976,824 - Sama_0792 0.43 +2.4 976,824 - Sama_0792 0.43 +2.4 976,824 - Sama_0792 0.43 +3.4 976,824 - Sama_0792 0.43 +3.1 976,824 - Sama_0792 0.43 +2.7 976,893 - Sama_0792 0.54 +2.6 976,893 - Sama_0792 0.54 +2.2 976,893 - Sama_0792 0.54 +2.0 976,893 - Sama_0792 0.54 +1.0 976,897 - Sama_0792 0.55 +2.2 976,897 - Sama_0792 0.55 +2.5 976,941 + Sama_0792 0.62 +2.4 976,942 - Sama_0792 0.62 +3.2 976,942 - Sama_0792 0.62 +2.4 976,942 - Sama_0792 0.62 +2.4 976,942 - Sama_0792 0.62 +2.8 977,021 + Sama_0792 0.74 +2.8 977,023 + Sama_0792 0.74 +2.9 977,023 + Sama_0792 0.74 +1.8 977,023 + Sama_0792 0.74 +2.0 977,023 + Sama_0792 0.74 +3.2 977,024 - Sama_0792 0.74 +2.2 977,024 - Sama_0792 0.74 +0.9 977,024 - Sama_0792 0.74 +2.2 977,024 - Sama_0792 0.74 +2.4 977,024 - Sama_0792 0.74 +1.8 977,024 - Sama_0792 0.74 +2.3 977,082 + Sama_0792 0.84 +0.9 977,121 + Sama_0792 0.90 +2.4 977,121 + Sama_0792 0.90 +3.3 977,121 + Sama_0792 0.90 +2.5 977,122 - Sama_0792 0.90 +2.6 977,190 - -0.8 977,237 + +0.7 977,277 + +1.3 977,302 + -1.1 977,302 + -1.1 977,302 + -0.0 977,302 + -0.5 977,303 - +0.1 977,303 - -0.8 977,303 - -0.9 977,303 - -1.3 977,353 + -1.7 977,356 + -1.4 977,357 - +0.0 977,369 + -0.3 977,369 + +1.0 977,370 - +0.5 977,370 - -2.0 977,370 - +0.4 977,370 - -0.6 977,411 + -0.4 977,411 + -0.6 977,411 + -1.7 977,412 - +0.2 977,505 + Sama_0793 0.18 -2.4 977,506 - Sama_0793 0.19 -1.1 977,507 + Sama_0793 0.19 +0.6 977,508 - Sama_0793 0.19 -1.4 977,537 + Sama_0793 0.21 +0.4 977,537 + Sama_0793 0.21 -0.8 977,538 - Sama_0793 0.22 +0.7 977,538 - Sama_0793 0.22 -1.0 977,538 - Sama_0793 0.22 -0.3 977,538 - Sama_0793 0.22 -0.1 977,571 + Sama_0793 0.25 -0.5 977,571 + Sama_0793 0.25 -1.3 977,572 - Sama_0793 0.25 +0.1 977,572 - Sama_0793 0.25 -0.5 977,687 + Sama_0793 0.35 -2.1 977,713 + Sama_0793 0.38 +1.3 977,714 - Sama_0793 0.38 -0.7 977,734 - Sama_0793 0.40 -0.7 977,734 - Sama_0793 0.40 -1.7 977,734 - Sama_0793 0.40 -0.3 977,744 + Sama_0793 0.41 +0.1 977,744 + Sama_0793 0.41 -1.1 977,744 + Sama_0793 0.41 -0.8 977,744 + Sama_0793 0.41 -0.8 977,744 + Sama_0793 0.41 -0.8 977,744 + Sama_0793 0.41 +0.5 977,744 + Sama_0793 0.41 +0.7 977,744 + Sama_0793 0.41 +0.7 977,744 + Sama_0793 0.41 -1.4 977,744 + Sama_0793 0.41 +0.6 977,745 - Sama_0793 0.41 +0.2 977,745 - Sama_0793 0.41 -1.6 977,745 - Sama_0793 0.41 -0.1 977,745 - Sama_0793 0.41 -0.8 977,745 - Sama_0793 0.41 -1.8 977,745 - Sama_0793 0.41 +0.4 977,746 + Sama_0793 0.41 -2.2 977,746 + Sama_0793 0.41 -0.8 977,746 + Sama_0793 0.41 +0.4 977,747 - Sama_0793 0.41 -1.3 977,747 - Sama_0793 0.41 -0.1 977,791 + Sama_0793 0.45 +0.0 977,792 - Sama_0793 0.45 -0.4 977,792 - Sama_0793 0.45 -0.4 977,802 + Sama_0793 0.46 -0.4 977,802 + Sama_0793 0.46 -1.0 977,829 + Sama_0793 0.49 -0.9 977,844 + Sama_0793 0.50 +1.4 977,844 + Sama_0793 0.50 -0.7 977,844 + Sama_0793 0.50 +1.7 977,845 - Sama_0793 0.50 -0.8 977,845 - Sama_0793 0.50 -1.3 977,845 - Sama_0793 0.50 -1.4 977,845 - Sama_0793 0.50 +0.8 978,007 - Sama_0793 0.65 +0.5 978,064 + Sama_0793 0.70 -0.4 978,065 - Sama_0793 0.70 -0.4 978,110 - Sama_0793 0.75 -1.1
Or see this region's nucleotide sequence