Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0767 and Sama_0768 are separated by 53 nucleotides Sama_0768 and Sama_0769 are separated by 253 nucleotides
Sama_0767: Sama_0767 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 950,251 to 951,891
_0767
Sama_0768: Sama_0768 - hypothetical protein (RefSeq), at 951,945 to 952,535
_0768
Sama_0769: Sama_0769 - UDP-N-acetylmuramate (RefSeq), at 952,789 to 954,165
_0769
Position (kb) 951
952
953 Strain fitness (log2 ratio) -1
0
1
2 at 951.053 kb on + strand, within Sama_0767 at 951.255 kb on + strand, within Sama_0767 at 951.256 kb on - strand, within Sama_0767 at 951.256 kb on - strand, within Sama_0767 at 951.256 kb on - strand, within Sama_0767 at 951.262 kb on - strand, within Sama_0767 at 951.382 kb on - strand, within Sama_0767 at 951.434 kb on + strand, within Sama_0767 at 951.542 kb on + strand, within Sama_0767 at 951.544 kb on - strand, within Sama_0767 at 951.544 kb on - strand, within Sama_0767 at 951.600 kb on - strand, within Sama_0767 at 951.651 kb on + strand, within Sama_0767 at 951.652 kb on - strand, within Sama_0767 at 951.816 kb on + strand at 951.853 kb on - strand at 951.853 kb on - strand at 951.889 kb on + strand at 951.890 kb on - strand at 951.901 kb on - strand at 951.947 kb on - strand at 951.999 kb on + strand at 952.008 kb on - strand, within Sama_0768 at 952.176 kb on + strand, within Sama_0768 at 952.177 kb on - strand, within Sama_0768 at 952.177 kb on - strand, within Sama_0768 at 952.177 kb on - strand, within Sama_0768 at 952.261 kb on + strand, within Sama_0768 at 952.573 kb on + strand at 952.617 kb on + strand at 952.617 kb on + strand at 952.618 kb on - strand at 952.618 kb on - strand at 952.724 kb on + strand at 952.724 kb on + strand at 952.724 kb on + strand at 952.725 kb on - strand at 952.729 kb on + strand at 952.729 kb on + strand at 952.768 kb on + strand at 952.796 kb on + strand at 952.796 kb on + strand at 952.796 kb on + strand at 952.796 kb on + strand at 952.797 kb on - strand at 952.891 kb on + strand at 952.926 kb on + strand at 953.050 kb on + strand, within Sama_0769 at 953.050 kb on + strand, within Sama_0769 at 953.127 kb on + strand, within Sama_0769 at 953.272 kb on + strand, within Sama_0769 at 953.334 kb on + strand, within Sama_0769 at 953.364 kb on + strand, within Sama_0769 at 953.400 kb on + strand, within Sama_0769 at 953.400 kb on + strand, within Sama_0769 at 953.511 kb on + strand, within Sama_0769 at 953.511 kb on + strand, within Sama_0769
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 951,053 + Sama_0767 0.49 -0.5 951,255 + Sama_0767 0.61 +0.7 951,256 - Sama_0767 0.61 -0.4 951,256 - Sama_0767 0.61 -0.7 951,256 - Sama_0767 0.61 -0.4 951,262 - Sama_0767 0.62 +0.3 951,382 - Sama_0767 0.69 +2.3 951,434 + Sama_0767 0.72 +0.3 951,542 + Sama_0767 0.79 +1.0 951,544 - Sama_0767 0.79 -0.0 951,544 - Sama_0767 0.79 -0.4 951,600 - Sama_0767 0.82 -1.3 951,651 + Sama_0767 0.85 -0.6 951,652 - Sama_0767 0.85 -0.3 951,816 + +0.4 951,853 - -1.3 951,853 - -1.1 951,889 + +1.3 951,890 - +1.6 951,901 - -1.6 951,947 - -0.3 951,999 + -0.1 952,008 - Sama_0768 0.11 +0.2 952,176 + Sama_0768 0.39 -1.1 952,177 - Sama_0768 0.39 -0.9 952,177 - Sama_0768 0.39 -0.9 952,177 - Sama_0768 0.39 +0.0 952,261 + Sama_0768 0.53 -0.7 952,573 + +0.6 952,617 + -0.4 952,617 + -0.7 952,618 - -1.3 952,618 - -0.8 952,724 + -0.3 952,724 + +0.7 952,724 + +0.9 952,725 - +0.4 952,729 + -0.3 952,729 + +0.6 952,768 + +0.1 952,796 + -0.8 952,796 + +1.0 952,796 + +0.0 952,796 + +0.4 952,797 - -1.1 952,891 + -0.5 952,926 + +1.3 953,050 + Sama_0769 0.19 -0.2 953,050 + Sama_0769 0.19 +0.0 953,127 + Sama_0769 0.25 +0.7 953,272 + Sama_0769 0.35 -0.3 953,334 + Sama_0769 0.40 -0.5 953,364 + Sama_0769 0.42 +1.4 953,400 + Sama_0769 0.44 +0.3 953,400 + Sama_0769 0.44 +1.6 953,511 + Sama_0769 0.52 +0.4 953,511 + Sama_0769 0.52 +0.6
Or see this region's nucleotide sequence