Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0685 and Sama_0686 are separated by 86 nucleotides Sama_0686 and Sama_0687 are separated by 54 nucleotides
Sama_0685: Sama_0685 - hypothetical protein (RefSeq), at 846,844 to 848,097
_0685
Sama_0686: Sama_0686 - ROK family protein (RefSeq), at 848,184 to 848,972
_0686
Sama_0687: Sama_0687 - hypothetical protein (RefSeq), at 849,027 to 851,735
_0687
Position (kb) 848
849 Strain fitness (log2 ratio) -2
-1
0
1
2 at 847.199 kb on + strand, within Sama_0685 at 847.199 kb on + strand, within Sama_0685 at 847.199 kb on + strand, within Sama_0685 at 847.200 kb on - strand, within Sama_0685 at 847.200 kb on - strand, within Sama_0685 at 847.200 kb on - strand, within Sama_0685 at 847.244 kb on - strand, within Sama_0685 at 847.244 kb on - strand, within Sama_0685 at 847.355 kb on + strand, within Sama_0685 at 847.374 kb on + strand, within Sama_0685 at 847.375 kb on - strand, within Sama_0685 at 847.375 kb on - strand, within Sama_0685 at 847.381 kb on + strand, within Sama_0685 at 847.381 kb on + strand, within Sama_0685 at 847.444 kb on + strand, within Sama_0685 at 847.444 kb on + strand, within Sama_0685 at 847.445 kb on - strand, within Sama_0685 at 847.445 kb on - strand, within Sama_0685 at 847.617 kb on + strand, within Sama_0685 at 847.617 kb on + strand, within Sama_0685 at 847.617 kb on + strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.666 kb on - strand, within Sama_0685 at 847.666 kb on - strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.756 kb on + strand, within Sama_0685 at 847.804 kb on + strand, within Sama_0685 at 847.804 kb on + strand, within Sama_0685 at 847.805 kb on - strand, within Sama_0685 at 847.832 kb on + strand, within Sama_0685 at 847.832 kb on + strand, within Sama_0685 at 847.833 kb on - strand, within Sama_0685 at 847.908 kb on - strand, within Sama_0685 at 847.931 kb on + strand, within Sama_0685 at 847.932 kb on - strand, within Sama_0685 at 847.932 kb on - strand, within Sama_0685 at 847.973 kb on + strand at 847.973 kb on + strand at 847.973 kb on + strand at 848.037 kb on + strand at 848.038 kb on - strand at 848.038 kb on - strand at 848.064 kb on + strand at 848.065 kb on - strand at 848.065 kb on - strand at 848.100 kb on + strand at 848.100 kb on + strand at 848.108 kb on + strand at 848.129 kb on + strand at 848.167 kb on + strand at 848.167 kb on + strand at 848.168 kb on - strand at 848.178 kb on + strand at 848.178 kb on + strand at 848.179 kb on - strand at 848.249 kb on + strand at 848.249 kb on + strand at 848.249 kb on + strand at 848.249 kb on + strand at 848.250 kb on - strand at 848.250 kb on - strand at 848.259 kb on + strand at 848.259 kb on + strand at 848.259 kb on + strand at 848.260 kb on - strand at 848.260 kb on - strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.262 kb on - strand at 848.262 kb on - strand at 848.262 kb on - strand at 848.262 kb on - strand at 848.288 kb on + strand, within Sama_0686 at 848.347 kb on - strand, within Sama_0686 at 848.384 kb on + strand, within Sama_0686 at 848.480 kb on + strand, within Sama_0686 at 848.481 kb on - strand, within Sama_0686 at 848.558 kb on + strand, within Sama_0686 at 848.631 kb on - strand, within Sama_0686 at 848.697 kb on - strand, within Sama_0686 at 848.704 kb on + strand, within Sama_0686 at 848.704 kb on + strand, within Sama_0686 at 848.704 kb on + strand, within Sama_0686 at 848.705 kb on - strand, within Sama_0686 at 848.705 kb on - strand, within Sama_0686 at 848.766 kb on - strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.789 kb on - strand, within Sama_0686 at 848.789 kb on - strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.837 kb on + strand, within Sama_0686 at 848.837 kb on + strand, within Sama_0686 at 848.906 kb on + strand at 849.028 kb on + strand at 849.028 kb on + strand at 849.029 kb on - strand at 849.029 kb on - strand at 849.029 kb on - strand at 849.062 kb on - strand at 849.071 kb on + strand at 849.072 kb on - strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.092 kb on - strand at 849.092 kb on - strand at 849.123 kb on - strand at 849.208 kb on - strand at 849.214 kb on - strand at 849.214 kb on - strand at 849.254 kb on - strand at 849.288 kb on + strand at 849.288 kb on + strand at 849.289 kb on - strand at 849.289 kb on - strand at 849.289 kb on - strand at 849.289 kb on - strand at 849.292 kb on + strand at 849.292 kb on + strand at 849.292 kb on + strand at 849.292 kb on + strand at 849.293 kb on - strand at 849.293 kb on - strand at 849.293 kb on - strand at 849.409 kb on + strand, within Sama_0687 at 849.409 kb on + strand, within Sama_0687 at 849.409 kb on + strand, within Sama_0687 at 849.435 kb on - strand, within Sama_0687 at 849.568 kb on - strand, within Sama_0687 at 849.630 kb on - strand, within Sama_0687 at 849.709 kb on + strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.778 kb on + strand, within Sama_0687 at 849.778 kb on + strand, within Sama_0687 at 849.778 kb on + strand, within Sama_0687 at 849.817 kb on + strand, within Sama_0687 at 849.818 kb on - strand, within Sama_0687 at 849.818 kb on - strand, within Sama_0687 at 849.818 kb on - strand, within Sama_0687 at 849.827 kb on + strand, within Sama_0687 at 849.827 kb on + strand, within Sama_0687 at 849.828 kb on - strand, within Sama_0687 at 849.913 kb on + strand, within Sama_0687 at 849.913 kb on + strand, within Sama_0687 at 849.914 kb on - strand, within Sama_0687 at 849.914 kb on - strand, within Sama_0687 at 849.914 kb on - strand, within Sama_0687
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 847,199 + Sama_0685 0.28 +0.6 847,199 + Sama_0685 0.28 +0.0 847,199 + Sama_0685 0.28 +0.4 847,200 - Sama_0685 0.28 -0.8 847,200 - Sama_0685 0.28 +0.8 847,200 - Sama_0685 0.28 +0.1 847,244 - Sama_0685 0.32 -0.8 847,244 - Sama_0685 0.32 +0.5 847,355 + Sama_0685 0.41 +0.3 847,374 + Sama_0685 0.42 -2.1 847,375 - Sama_0685 0.42 +0.2 847,375 - Sama_0685 0.42 +0.0 847,381 + Sama_0685 0.43 +0.5 847,381 + Sama_0685 0.43 -0.2 847,444 + Sama_0685 0.48 +0.2 847,444 + Sama_0685 0.48 -0.5 847,445 - Sama_0685 0.48 +0.3 847,445 - Sama_0685 0.48 +0.4 847,617 + Sama_0685 0.62 -1.1 847,617 + Sama_0685 0.62 -0.3 847,617 + Sama_0685 0.62 +0.2 847,618 - Sama_0685 0.62 -0.4 847,618 - Sama_0685 0.62 -0.2 847,618 - Sama_0685 0.62 -0.5 847,618 - Sama_0685 0.62 +0.2 847,618 - Sama_0685 0.62 +0.2 847,618 - Sama_0685 0.62 +0.4 847,618 - Sama_0685 0.62 -1.2 847,665 + Sama_0685 0.65 +0.1 847,665 + Sama_0685 0.65 -0.5 847,665 + Sama_0685 0.65 -0.3 847,665 + Sama_0685 0.65 +0.5 847,666 - Sama_0685 0.66 +0.5 847,666 - Sama_0685 0.66 +0.1 847,678 + Sama_0685 0.67 +0.4 847,678 + Sama_0685 0.67 +0.1 847,678 + Sama_0685 0.67 +0.3 847,678 + Sama_0685 0.67 -1.1 847,678 + Sama_0685 0.67 -0.3 847,678 + Sama_0685 0.67 +0.8 847,678 + Sama_0685 0.67 -1.0 847,679 - Sama_0685 0.67 +0.4 847,679 - Sama_0685 0.67 +0.8 847,679 - Sama_0685 0.67 -0.1 847,679 - Sama_0685 0.67 +0.5 847,679 - Sama_0685 0.67 -0.3 847,679 - Sama_0685 0.67 +0.5 847,679 - Sama_0685 0.67 -0.1 847,679 - Sama_0685 0.67 -1.8 847,679 - Sama_0685 0.67 -0.9 847,756 + Sama_0685 0.73 -1.4 847,804 + Sama_0685 0.77 -0.6 847,804 + Sama_0685 0.77 +0.4 847,805 - Sama_0685 0.77 -0.3 847,832 + Sama_0685 0.79 -0.0 847,832 + Sama_0685 0.79 -0.7 847,833 - Sama_0685 0.79 -1.5 847,908 - Sama_0685 0.85 -0.1 847,931 + Sama_0685 0.87 +0.9 847,932 - Sama_0685 0.87 -0.5 847,932 - Sama_0685 0.87 +0.3 847,973 + +0.3 847,973 + +0.4 847,973 + -0.3 848,037 + +0.4 848,038 - +0.4 848,038 - -0.8 848,064 + -0.1 848,065 - -0.9 848,065 - +0.5 848,100 + +0.3 848,100 + +0.4 848,108 + +0.8 848,129 + -0.8 848,167 + +0.0 848,167 + +1.4 848,168 - +0.5 848,178 + -0.7 848,178 + -0.6 848,179 - -0.8 848,249 + +0.1 848,249 + -0.2 848,249 + +0.4 848,249 + -0.1 848,250 - -0.7 848,250 - -1.1 848,259 + +0.6 848,259 + -0.0 848,259 + -0.5 848,260 - -0.2 848,260 - +0.6 848,261 + -0.4 848,261 + -0.1 848,261 + -0.5 848,261 + -0.1 848,261 + +0.9 848,262 - -1.1 848,262 - -0.4 848,262 - +0.5 848,262 - -0.0 848,288 + Sama_0686 0.13 +0.7 848,347 - Sama_0686 0.21 -0.4 848,384 + Sama_0686 0.25 -1.7 848,480 + Sama_0686 0.38 +0.5 848,481 - Sama_0686 0.38 +0.3 848,558 + Sama_0686 0.47 -0.3 848,631 - Sama_0686 0.57 +0.4 848,697 - Sama_0686 0.65 +0.8 848,704 + Sama_0686 0.66 -1.1 848,704 + Sama_0686 0.66 -0.1 848,704 + Sama_0686 0.66 -0.6 848,705 - Sama_0686 0.66 +0.3 848,705 - Sama_0686 0.66 +0.3 848,766 - Sama_0686 0.74 +0.4 848,788 + Sama_0686 0.77 +0.9 848,788 + Sama_0686 0.77 -0.5 848,788 + Sama_0686 0.77 -1.9 848,788 + Sama_0686 0.77 +0.6 848,788 + Sama_0686 0.77 -0.4 848,789 - Sama_0686 0.77 -0.3 848,789 - Sama_0686 0.77 +0.5 848,790 + Sama_0686 0.77 -0.9 848,790 + Sama_0686 0.77 -2.3 848,790 + Sama_0686 0.77 -0.7 848,790 + Sama_0686 0.77 +1.0 848,790 + Sama_0686 0.77 +1.0 848,790 + Sama_0686 0.77 -1.8 848,790 + Sama_0686 0.77 -0.9 848,790 + Sama_0686 0.77 -0.1 848,790 + Sama_0686 0.77 -0.0 848,790 + Sama_0686 0.77 -0.5 848,791 - Sama_0686 0.77 +0.6 848,791 - Sama_0686 0.77 +2.1 848,791 - Sama_0686 0.77 -0.9 848,791 - Sama_0686 0.77 +0.0 848,837 + Sama_0686 0.83 -0.1 848,837 + Sama_0686 0.83 -1.3 848,906 + -0.6 849,028 + -0.8 849,028 + +0.8 849,029 - +0.5 849,029 - +0.2 849,029 - +1.1 849,062 - -0.2 849,071 + +0.3 849,072 - +0.3 849,089 + -1.2 849,089 + +0.2 849,089 + -1.0 849,089 + -0.3 849,089 + +1.1 849,089 + -0.4 849,089 + -0.1 849,090 - -0.8 849,090 - -2.7 849,090 - -0.6 849,090 - -0.0 849,090 - -0.2 849,090 - -1.0 849,091 + -0.2 849,091 + -0.5 849,091 + +1.1 849,091 + -0.3 849,091 + -0.9 849,091 + +0.8 849,091 + -0.3 849,091 + +2.5 849,091 + +0.9 849,091 + -0.1 849,092 - -0.4 849,092 - +0.5 849,123 - +0.1 849,208 - -0.4 849,214 - +0.1 849,214 - +0.8 849,254 - +0.5 849,288 + -0.2 849,288 + -1.5 849,289 - -0.8 849,289 - +0.3 849,289 - -1.7 849,289 - -0.7 849,292 + -0.2 849,292 + -0.4 849,292 + -0.7 849,292 + -0.1 849,293 - -0.8 849,293 - +0.5 849,293 - -0.8 849,409 + Sama_0687 0.14 +0.2 849,409 + Sama_0687 0.14 -0.6 849,409 + Sama_0687 0.14 +0.6 849,435 - Sama_0687 0.15 +0.6 849,568 - Sama_0687 0.20 -0.8 849,630 - Sama_0687 0.22 +0.3 849,709 + Sama_0687 0.25 +0.4 849,741 - Sama_0687 0.26 -0.6 849,741 - Sama_0687 0.26 +0.2 849,741 - Sama_0687 0.26 +0.4 849,741 - Sama_0687 0.26 +0.6 849,778 + Sama_0687 0.28 -0.4 849,778 + Sama_0687 0.28 -0.5 849,778 + Sama_0687 0.28 +0.2 849,817 + Sama_0687 0.29 +0.4 849,818 - Sama_0687 0.29 -1.0 849,818 - Sama_0687 0.29 -1.1 849,818 - Sama_0687 0.29 -0.0 849,827 + Sama_0687 0.30 -2.2 849,827 + Sama_0687 0.30 -0.8 849,828 - Sama_0687 0.30 -0.1 849,913 + Sama_0687 0.33 -0.2 849,913 + Sama_0687 0.33 -1.4 849,914 - Sama_0687 0.33 +1.5 849,914 - Sama_0687 0.33 -2.0 849,914 - Sama_0687 0.33 -1.0
Or see this region's nucleotide sequence