Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0274 and Sama_0275 are separated by 316 nucleotides
Sama_0274: Sama_0274 - LysR family transcriptional regulator (RefSeq), at 315,340 to 316,263
_0274
Sama_0275: Sama_0275 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 316,580 to 317,083
_0275
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 315.580 kb on - strand, within Sama_0274 at 315.580 kb on - strand, within Sama_0274 at 315.580 kb on - strand, within Sama_0274 at 315.580 kb on - strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.584 kb on + strand, within Sama_0274 at 315.585 kb on - strand, within Sama_0274 at 315.585 kb on - strand, within Sama_0274 at 315.662 kb on + strand, within Sama_0274 at 315.662 kb on + strand, within Sama_0274 at 315.685 kb on + strand, within Sama_0274 at 315.685 kb on + strand, within Sama_0274 at 315.685 kb on + strand, within Sama_0274 at 315.686 kb on - strand, within Sama_0274 at 315.686 kb on - strand, within Sama_0274 at 315.686 kb on - strand, within Sama_0274 at 315.712 kb on + strand, within Sama_0274 at 315.713 kb on - strand, within Sama_0274 at 315.713 kb on - strand, within Sama_0274 at 315.713 kb on - strand, within Sama_0274 at 315.787 kb on + strand, within Sama_0274 at 315.787 kb on + strand, within Sama_0274 at 315.787 kb on + strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.788 kb on - strand, within Sama_0274 at 315.831 kb on + strand, within Sama_0274 at 315.847 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.898 kb on - strand, within Sama_0274 at 315.906 kb on + strand, within Sama_0274 at 315.907 kb on - strand, within Sama_0274 at 315.947 kb on + strand, within Sama_0274 at 316.061 kb on + strand, within Sama_0274 at 316.061 kb on + strand, within Sama_0274 at 316.061 kb on + strand, within Sama_0274 at 316.062 kb on - strand, within Sama_0274 at 316.067 kb on + strand, within Sama_0274 at 316.067 kb on + strand, within Sama_0274 at 316.149 kb on + strand, within Sama_0274 at 316.149 kb on + strand, within Sama_0274 at 316.150 kb on - strand, within Sama_0274 at 316.150 kb on - strand, within Sama_0274 at 316.182 kb on + strand at 316.182 kb on + strand at 316.183 kb on - strand at 316.206 kb on + strand at 316.233 kb on + strand at 316.233 kb on + strand at 316.233 kb on + strand at 316.243 kb on + strand at 316.284 kb on - strand at 316.284 kb on - strand at 316.284 kb on - strand at 316.314 kb on + strand at 316.314 kb on + strand at 316.314 kb on + strand at 316.314 kb on + strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.315 kb on - strand at 316.322 kb on + strand at 316.323 kb on - strand at 316.323 kb on - strand at 316.330 kb on + strand at 316.330 kb on + strand at 316.330 kb on + strand at 316.331 kb on - strand at 316.331 kb on - strand at 316.331 kb on - strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.350 kb on + strand at 316.437 kb on + strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.439 kb on + strand at 316.439 kb on + strand at 316.471 kb on + strand at 316.471 kb on + strand at 316.471 kb on + strand at 316.472 kb on - strand at 316.472 kb on - strand at 316.567 kb on + strand at 316.567 kb on + strand at 316.567 kb on + strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.589 kb on + strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.590 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.616 kb on - strand at 316.652 kb on + strand, within Sama_0275 at 316.652 kb on + strand, within Sama_0275 at 316.652 kb on + strand, within Sama_0275 at 316.653 kb on - strand, within Sama_0275 at 316.662 kb on + strand, within Sama_0275 at 316.673 kb on + strand, within Sama_0275 at 316.673 kb on + strand, within Sama_0275 at 316.674 kb on - strand, within Sama_0275 at 316.732 kb on + strand, within Sama_0275 at 316.732 kb on + strand, within Sama_0275 at 316.732 kb on + strand, within Sama_0275 at 316.733 kb on - strand, within Sama_0275 at 316.795 kb on + strand, within Sama_0275 at 316.854 kb on - strand, within Sama_0275 at 316.867 kb on + strand, within Sama_0275 at 316.936 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.964 kb on + strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.965 kb on - strand, within Sama_0275 at 316.997 kb on + strand, within Sama_0275 at 316.997 kb on + strand, within Sama_0275 at 316.998 kb on - strand, within Sama_0275 at 316.998 kb on - strand, within Sama_0275 at 317.020 kb on + strand, within Sama_0275 at 317.033 kb on + strand at 317.034 kb on - strand at 317.034 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.058 kb on - strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.072 kb on + strand at 317.073 kb on - strand at 317.073 kb on - strand at 317.074 kb on + strand at 317.075 kb on - strand at 317.075 kb on - strand at 317.075 kb on - strand at 317.205 kb on + strand at 317.205 kb on + strand at 317.206 kb on - strand at 317.206 kb on - strand at 317.347 kb on + strand at 317.348 kb on - strand at 317.492 kb on + strand at 317.493 kb on - strand at 317.493 kb on - strand at 317.493 kb on - strand at 317.493 kb on - strand at 317.615 kb on - strand at 317.615 kb on - strand at 317.615 kb on - strand at 317.640 kb on + strand at 317.640 kb on + strand at 317.640 kb on + strand at 317.641 kb on - strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.646 kb on + strand at 317.647 kb on - strand at 317.647 kb on - strand at 317.647 kb on - strand at 317.649 kb on + strand at 317.650 kb on - strand at 317.650 kb on - strand at 317.656 kb on + strand at 317.656 kb on + strand at 317.657 kb on - strand at 317.686 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.703 kb on - strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.704 kb on + strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.705 kb on - strand at 317.720 kb on + strand at 317.720 kb on + strand at 317.721 kb on - strand at 317.721 kb on - strand at 317.721 kb on - strand at 317.722 kb on + strand at 317.723 kb on - strand at 317.723 kb on - strand at 317.757 kb on - strand at 317.790 kb on - strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.814 kb on + strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.815 kb on - strand at 317.827 kb on + strand at 317.827 kb on + strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.828 kb on - strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.834 kb on + strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.835 kb on - strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.838 kb on + strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.839 kb on - strand at 317.939 kb on - strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.968 kb on + strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.969 kb on - strand at 317.996 kb on + strand at 317.996 kb on + strand at 317.996 kb on + strand at 317.997 kb on - strand at 317.997 kb on - strand at 317.997 kb on - strand at 317.997 kb on - strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.998 kb on + strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand at 317.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 315,580 - Sama_0274 0.26 -0.5 315,580 - Sama_0274 0.26 -1.1 315,580 - Sama_0274 0.26 -1.1 315,580 - Sama_0274 0.26 +0.4 315,584 + Sama_0274 0.26 -0.1 315,584 + Sama_0274 0.26 -0.3 315,584 + Sama_0274 0.26 -0.2 315,584 + Sama_0274 0.26 -2.1 315,584 + Sama_0274 0.26 -0.9 315,584 + Sama_0274 0.26 -1.2 315,584 + Sama_0274 0.26 +1.6 315,584 + Sama_0274 0.26 -0.3 315,585 - Sama_0274 0.27 +1.1 315,585 - Sama_0274 0.27 -0.1 315,662 + Sama_0274 0.35 +0.1 315,662 + Sama_0274 0.35 +0.5 315,685 + Sama_0274 0.37 +0.2 315,685 + Sama_0274 0.37 -0.2 315,685 + Sama_0274 0.37 -0.5 315,686 - Sama_0274 0.37 -0.9 315,686 - Sama_0274 0.37 -0.0 315,686 - Sama_0274 0.37 -0.6 315,712 + Sama_0274 0.40 +0.4 315,713 - Sama_0274 0.40 -1.6 315,713 - Sama_0274 0.40 +0.3 315,713 - Sama_0274 0.40 -0.4 315,787 + Sama_0274 0.48 +0.5 315,787 + Sama_0274 0.48 +0.6 315,787 + Sama_0274 0.48 +1.0 315,788 - Sama_0274 0.48 -0.6 315,788 - Sama_0274 0.48 +0.3 315,788 - Sama_0274 0.48 -0.2 315,788 - Sama_0274 0.48 -0.5 315,788 - Sama_0274 0.48 +1.2 315,831 + Sama_0274 0.53 +1.2 315,847 - Sama_0274 0.55 +0.0 315,898 - Sama_0274 0.60 -0.0 315,898 - Sama_0274 0.60 -0.5 315,898 - Sama_0274 0.60 +0.4 315,898 - Sama_0274 0.60 -0.9 315,906 + Sama_0274 0.61 +0.9 315,907 - Sama_0274 0.61 +0.6 315,947 + Sama_0274 0.66 -0.3 316,061 + Sama_0274 0.78 -1.2 316,061 + Sama_0274 0.78 +0.5 316,061 + Sama_0274 0.78 -0.8 316,062 - Sama_0274 0.78 -0.6 316,067 + Sama_0274 0.79 -2.3 316,067 + Sama_0274 0.79 -0.6 316,149 + Sama_0274 0.88 +0.4 316,149 + Sama_0274 0.88 +0.1 316,150 - Sama_0274 0.88 -1.1 316,150 - Sama_0274 0.88 +0.3 316,182 + -0.1 316,182 + -1.8 316,183 - -0.3 316,206 + +0.9 316,233 + -0.2 316,233 + -0.3 316,233 + +0.2 316,243 + -0.3 316,284 - -0.7 316,284 - +1.1 316,284 - +1.4 316,314 + -0.9 316,314 + -1.7 316,314 + -0.2 316,314 + -0.2 316,315 - +1.0 316,315 - -0.3 316,315 - -0.7 316,315 - +0.1 316,315 - +0.0 316,315 - -0.9 316,322 + -0.1 316,323 - +0.7 316,323 - -1.1 316,330 + +1.1 316,330 + +0.9 316,330 + -3.1 316,331 - -0.1 316,331 - -0.3 316,331 - -0.7 316,350 + -0.3 316,350 + +0.1 316,350 + +0.2 316,350 + +0.1 316,350 + -0.7 316,437 + +0.1 316,438 - +0.6 316,438 - -0.5 316,438 - +0.1 316,438 - -0.6 316,439 + +0.3 316,439 + -0.1 316,471 + +0.2 316,471 + -0.0 316,471 + -2.6 316,472 - -0.8 316,472 - +0.4 316,567 + +0.5 316,567 + +0.1 316,567 + +0.3 316,568 - -0.6 316,568 - +0.2 316,568 - -2.3 316,568 - -0.1 316,568 - +0.1 316,589 + -0.3 316,589 + -1.3 316,589 + +0.5 316,589 + +0.0 316,589 + +0.6 316,589 + -0.1 316,590 - +0.4 316,590 - -0.3 316,590 - -0.8 316,590 - -1.7 316,590 - +1.1 316,590 - -0.1 316,590 - -0.6 316,616 - -0.3 316,616 - +0.1 316,616 - -0.4 316,616 - +0.3 316,616 - +0.9 316,652 + Sama_0275 0.14 +0.2 316,652 + Sama_0275 0.14 -0.5 316,652 + Sama_0275 0.14 +0.5 316,653 - Sama_0275 0.14 +1.2 316,662 + Sama_0275 0.16 +0.6 316,673 + Sama_0275 0.18 +1.2 316,673 + Sama_0275 0.18 +0.6 316,674 - Sama_0275 0.19 +0.9 316,732 + Sama_0275 0.30 +0.6 316,732 + Sama_0275 0.30 -1.1 316,732 + Sama_0275 0.30 +0.3 316,733 - Sama_0275 0.30 +0.6 316,795 + Sama_0275 0.43 +0.8 316,854 - Sama_0275 0.54 +0.9 316,867 + Sama_0275 0.57 +1.6 316,936 + Sama_0275 0.71 +1.5 316,964 + Sama_0275 0.76 -0.9 316,964 + Sama_0275 0.76 +0.5 316,964 + Sama_0275 0.76 +1.7 316,964 + Sama_0275 0.76 +0.6 316,965 - Sama_0275 0.76 -1.1 316,965 - Sama_0275 0.76 -0.1 316,965 - Sama_0275 0.76 -0.2 316,965 - Sama_0275 0.76 +0.8 316,997 + Sama_0275 0.83 -0.4 316,997 + Sama_0275 0.83 +0.3 316,998 - Sama_0275 0.83 -0.9 316,998 - Sama_0275 0.83 +0.6 317,020 + Sama_0275 0.87 -0.7 317,033 + +0.5 317,034 - -1.4 317,034 - +0.2 317,046 - -0.8 317,046 - +0.5 317,046 - -0.4 317,046 - -0.8 317,058 - +0.5 317,072 + -0.2 317,072 + -0.0 317,072 + -1.4 317,072 + +0.1 317,072 + -0.6 317,072 + +0.9 317,072 + -0.3 317,072 + -1.4 317,072 + -0.5 317,072 + -1.0 317,073 - -0.3 317,073 - -0.8 317,074 + -0.2 317,075 - +1.0 317,075 - -1.3 317,075 - +0.9 317,205 + +1.0 317,205 + +0.9 317,206 - -1.4 317,206 - +0.3 317,347 + -1.8 317,348 - +1.0 317,492 + -0.2 317,493 - +0.2 317,493 - -0.6 317,493 - +0.4 317,493 - -0.9 317,615 - -0.1 317,615 - +0.9 317,615 - +0.8 317,640 + +0.2 317,640 + -0.6 317,640 + +0.1 317,641 - -0.1 317,646 + -0.7 317,646 + +0.6 317,646 + +1.1 317,646 + +0.0 317,646 + +0.1 317,646 + +0.1 317,647 - +0.4 317,647 - +0.7 317,647 - +0.2 317,649 + -0.4 317,650 - -1.4 317,650 - -0.4 317,656 + -0.1 317,656 + +0.6 317,657 - -1.0 317,686 - -1.2 317,703 - +0.1 317,703 - +0.1 317,703 - -0.1 317,703 - +0.4 317,703 - +0.4 317,704 + +0.0 317,704 + -0.4 317,704 + +1.9 317,704 + -0.5 317,704 + -1.3 317,704 + -0.6 317,704 + -2.4 317,704 + +0.9 317,704 + -1.1 317,704 + +0.4 317,704 + -0.1 317,704 + -0.4 317,704 + -0.2 317,704 + -0.3 317,704 + -1.0 317,704 + -0.5 317,704 + -0.7 317,705 - -0.2 317,705 - +0.3 317,705 - +0.3 317,705 - +1.9 317,705 - +0.4 317,705 - -0.3 317,705 - -0.9 317,705 - +0.3 317,705 - -0.7 317,705 - +0.0 317,705 - -0.6 317,705 - +0.5 317,705 - -0.1 317,705 - +0.1 317,720 + +0.2 317,720 + -0.1 317,721 - +0.5 317,721 - -0.1 317,721 - -0.2 317,722 + +0.3 317,723 - +0.8 317,723 - -1.4 317,757 - -0.9 317,790 - +0.9 317,814 + -0.4 317,814 + +0.0 317,814 + -0.3 317,814 + -0.5 317,814 + +0.5 317,814 + +0.9 317,815 - +0.1 317,815 - -1.1 317,815 - -1.5 317,815 - +0.1 317,815 - -0.5 317,815 - +0.1 317,815 - +0.3 317,827 + -0.2 317,827 + +0.8 317,828 - +0.1 317,828 - +0.7 317,828 - +0.5 317,828 - +0.1 317,828 - +0.4 317,828 - -0.8 317,834 + +0.1 317,834 + -0.1 317,834 + +0.6 317,834 + +1.2 317,834 + +0.6 317,834 + -1.1 317,834 + +1.2 317,834 + +0.6 317,834 + +0.7 317,834 + -0.8 317,834 + +1.1 317,834 + -0.2 317,834 + +0.9 317,834 + -0.1 317,834 + -0.7 317,835 - -1.4 317,835 - +0.6 317,835 - +0.8 317,835 - +0.1 317,835 - -0.5 317,835 - -0.1 317,835 - -0.3 317,835 - -0.3 317,835 - -0.7 317,835 - -0.4 317,835 - +0.5 317,835 - +0.3 317,835 - +0.3 317,835 - +0.1 317,835 - -0.7 317,835 - -0.6 317,835 - -0.3 317,835 - -0.7 317,835 - -0.7 317,835 - -0.6 317,835 - +0.3 317,838 + +0.6 317,838 + -1.4 317,838 + -0.9 317,838 + -0.5 317,838 + +1.6 317,838 + +0.3 317,838 + -0.3 317,838 + -1.0 317,839 - -0.0 317,839 - +1.6 317,839 - -0.7 317,839 - -0.0 317,839 - +0.4 317,839 - +0.3 317,839 - +0.6 317,839 - +0.3 317,839 - -1.5 317,939 - +0.4 317,968 + +1.2 317,968 + +1.1 317,968 + +0.5 317,968 + +0.2 317,968 + +0.4 317,969 - +0.7 317,969 - -0.1 317,969 - -0.7 317,969 - +0.2 317,969 - -1.9 317,996 + +0.5 317,996 + +0.3 317,996 + +0.9 317,997 - +0.5 317,997 - -0.8 317,997 - -0.3 317,997 - -0.8 317,998 + +0.5 317,998 + -0.8 317,998 + +0.2 317,998 + -0.2 317,998 + +0.0 317,998 + -0.7 317,998 + -0.2 317,998 + -1.0 317,998 + +0.7 317,998 + -0.4 317,998 + +0.5 317,999 - +0.9 317,999 - -1.9 317,999 - +1.0 317,999 - -0.3 317,999 - +0.4 317,999 - +1.4 317,999 - +0.2 317,999 - +0.6 317,999 - -0.9
Or see this region's nucleotide sequence