Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0251 and Sama_R0014 are separated by 436 nucleotides Sama_R0014 and Sama_R0015 are separated by 266 nucleotides
Sama_0251: Sama_0251 - thioredoxin, putative (RefSeq), at 274,865 to 275,446
_0251
Sama_R0014: Sama_R0014 - 16S ribosomal RNA (RefSeq), at 275,883 to 277,419
_R0014
Sama_R0015: Sama_R0015 - 23S ribosomal RNA (RefSeq), at 277,686 to 280,599
_R0015
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 275.051 kb on + strand, within Sama_0251 at 275.051 kb on + strand, within Sama_0251 at 275.051 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.086 kb on + strand, within Sama_0251 at 275.086 kb on + strand, within Sama_0251 at 275.087 kb on - strand, within Sama_0251 at 275.116 kb on - strand, within Sama_0251 at 275.116 kb on - strand, within Sama_0251 at 275.134 kb on + strand, within Sama_0251 at 275.134 kb on + strand, within Sama_0251 at 275.134 kb on + strand, within Sama_0251 at 275.135 kb on - strand, within Sama_0251 at 275.179 kb on + strand, within Sama_0251 at 275.179 kb on + strand, within Sama_0251 at 275.179 kb on + strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.194 kb on + strand, within Sama_0251 at 275.217 kb on + strand, within Sama_0251 at 275.271 kb on + strand, within Sama_0251 at 275.271 kb on + strand, within Sama_0251 at 275.272 kb on - strand, within Sama_0251 at 275.272 kb on - strand, within Sama_0251 at 275.293 kb on + strand, within Sama_0251 at 275.294 kb on - strand, within Sama_0251 at 275.312 kb on - strand, within Sama_0251 at 275.312 kb on - strand, within Sama_0251 at 275.317 kb on + strand, within Sama_0251 at 275.317 kb on + strand, within Sama_0251 at 275.317 kb on + strand, within Sama_0251 at 275.318 kb on - strand, within Sama_0251 at 275.320 kb on + strand, within Sama_0251 at 275.320 kb on + strand, within Sama_0251 at 275.321 kb on - strand, within Sama_0251 at 275.321 kb on - strand, within Sama_0251 at 275.374 kb on + strand, within Sama_0251 at 275.392 kb on + strand at 275.392 kb on + strand at 275.392 kb on + strand at 275.393 kb on - strand at 275.415 kb on + strand at 275.444 kb on + strand at 275.444 kb on + strand at 275.484 kb on + strand at 275.553 kb on - strand at 275.554 kb on + strand at 275.554 kb on + strand at 275.555 kb on - strand at 275.601 kb on + strand at 275.601 kb on + strand at 276.138 kb on + strand, within Sama_R0014 at 276.138 kb on + strand, within Sama_R0014 at 277.787 kb on + strand at 277.787 kb on + strand at 277.787 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 275,051 + Sama_0251 0.32 -0.0 275,051 + Sama_0251 0.32 +0.2 275,051 + Sama_0251 0.32 +1.1 275,077 + Sama_0251 0.36 +0.2 275,077 + Sama_0251 0.36 -0.5 275,077 + Sama_0251 0.36 -2.4 275,077 + Sama_0251 0.36 -0.0 275,077 + Sama_0251 0.36 -0.1 275,077 + Sama_0251 0.36 +1.1 275,078 - Sama_0251 0.37 +0.4 275,078 - Sama_0251 0.37 +0.2 275,078 - Sama_0251 0.37 -0.3 275,078 - Sama_0251 0.37 +0.1 275,078 - Sama_0251 0.37 +0.9 275,078 - Sama_0251 0.37 -1.7 275,086 + Sama_0251 0.38 -0.1 275,086 + Sama_0251 0.38 -0.3 275,087 - Sama_0251 0.38 +0.1 275,116 - Sama_0251 0.43 +0.2 275,116 - Sama_0251 0.43 +0.4 275,134 + Sama_0251 0.46 -1.9 275,134 + Sama_0251 0.46 -0.6 275,134 + Sama_0251 0.46 -0.1 275,135 - Sama_0251 0.46 -1.3 275,179 + Sama_0251 0.54 +0.4 275,179 + Sama_0251 0.54 +0.4 275,179 + Sama_0251 0.54 -0.8 275,180 - Sama_0251 0.54 +0.6 275,180 - Sama_0251 0.54 +0.7 275,180 - Sama_0251 0.54 -1.0 275,180 - Sama_0251 0.54 -1.3 275,180 - Sama_0251 0.54 -0.2 275,194 + Sama_0251 0.57 +0.2 275,217 + Sama_0251 0.60 -0.2 275,271 + Sama_0251 0.70 +0.6 275,271 + Sama_0251 0.70 +1.3 275,272 - Sama_0251 0.70 -0.1 275,272 - Sama_0251 0.70 -0.3 275,293 + Sama_0251 0.74 +0.3 275,294 - Sama_0251 0.74 -1.4 275,312 - Sama_0251 0.77 +0.7 275,312 - Sama_0251 0.77 +0.0 275,317 + Sama_0251 0.78 +0.1 275,317 + Sama_0251 0.78 -0.2 275,317 + Sama_0251 0.78 +0.3 275,318 - Sama_0251 0.78 +0.3 275,320 + Sama_0251 0.78 +1.5 275,320 + Sama_0251 0.78 -0.1 275,321 - Sama_0251 0.78 +0.3 275,321 - Sama_0251 0.78 -2.8 275,374 + Sama_0251 0.87 +1.3 275,392 + -0.9 275,392 + -0.2 275,392 + -0.8 275,393 - +0.8 275,415 + -0.1 275,444 + -1.1 275,444 + -1.2 275,484 + +0.4 275,553 - +0.6 275,554 + -0.0 275,554 + +0.1 275,555 - -1.0 275,601 + -0.0 275,601 + -0.8 276,138 + Sama_R0014 0.17 -1.4 276,138 + Sama_R0014 0.17 -1.5 277,787 + -0.1 277,787 + +0.9 277,787 + -0.7 277,823 + -1.2 277,823 + +1.2 277,823 + -0.4 277,823 + +0.2 277,823 + -0.1
Or see this region's nucleotide sequence