Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0031 and SOA0032 are separated by 124 nucleotides SOA0032 and SOA0033 are separated by 1 nucleotides SOA0033 and SOA0034 are separated by 30 nucleotides SOA0034 and SOA0035 are separated by 151 nucleotides
SOA0031: SOA0031 - partition protein, ParB family, putative (NCBI ptt file), at 22,779 to 24,653
SOA0031
SOA0032: SOA0032 - conserved hypothetical protein (NCBI ptt file), at 24,778 to 25,233
SOA0032
SOA0033: SOA0033 - hypothetical protein (NCBI ptt file), at 25,235 to 25,723
SOA0033
SOA0034: SOA0034 - hypothetical protein (NCBI ptt file), at 25,754 to 25,975
SOA0034
SOA0035: SOA0035 - ISSod4, transposase (NCBI ptt file), at 26,127 to 27,329
SOA0035
Position (kb) 24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 23.815 kb on - strand, within SOA0031 at 23.886 kb on + strand, within SOA0031 at 23.893 kb on - strand, within SOA0031 at 23.987 kb on + strand, within SOA0031 at 24.103 kb on - strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.109 kb on + strand, within SOA0031 at 24.117 kb on - strand, within SOA0031 at 24.117 kb on - strand, within SOA0031 at 24.117 kb on - strand, within SOA0031 at 24.117 kb on - strand, within SOA0031 at 24.117 kb on - strand, within SOA0031 at 24.117 kb on - strand, within SOA0031 at 24.160 kb on + strand, within SOA0031 at 24.168 kb on - strand, within SOA0031 at 24.168 kb on - strand, within SOA0031 at 24.221 kb on + strand, within SOA0031 at 24.228 kb on - strand, within SOA0031 at 24.240 kb on - strand, within SOA0031 at 24.287 kb on + strand, within SOA0031 at 24.295 kb on - strand, within SOA0031 at 24.336 kb on + strand, within SOA0031 at 24.348 kb on + strand, within SOA0031 at 24.348 kb on + strand, within SOA0031 at 24.356 kb on - strand, within SOA0031 at 24.356 kb on - strand, within SOA0031 at 24.475 kb on + strand at 24.510 kb on + strand at 24.552 kb on - strand at 24.566 kb on + strand at 24.567 kb on + strand at 24.665 kb on - strand at 24.670 kb on + strand at 24.670 kb on + strand at 24.697 kb on - strand at 24.697 kb on - strand at 24.697 kb on - strand at 24.765 kb on - strand at 24.943 kb on + strand, within SOA0032 at 24.945 kb on + strand, within SOA0032 at 24.951 kb on - strand, within SOA0032 at 24.993 kb on + strand, within SOA0032 at 25.016 kb on - strand, within SOA0032 at 25.030 kb on + strand, within SOA0032 at 25.039 kb on - strand, within SOA0032 at 25.039 kb on - strand, within SOA0032 at 25.046 kb on - strand, within SOA0032 at 25.085 kb on - strand, within SOA0032 at 25.109 kb on - strand, within SOA0032 at 25.111 kb on + strand, within SOA0032 at 25.200 kb on + strand at 25.214 kb on + strand at 25.285 kb on + strand, within SOA0033 at 25.287 kb on - strand, within SOA0033 at 25.328 kb on + strand, within SOA0033 at 25.355 kb on + strand, within SOA0033 at 25.355 kb on + strand, within SOA0033 at 25.394 kb on + strand, within SOA0033 at 25.447 kb on + strand, within SOA0033 at 25.447 kb on + strand, within SOA0033 at 25.510 kb on + strand, within SOA0033 at 25.575 kb on - strand, within SOA0033 at 25.575 kb on - strand, within SOA0033 at 25.575 kb on - strand, within SOA0033 at 25.575 kb on - strand, within SOA0033 at 25.579 kb on - strand, within SOA0033 at 25.579 kb on - strand, within SOA0033 at 25.586 kb on + strand, within SOA0033 at 25.586 kb on + strand, within SOA0033 at 25.660 kb on + strand, within SOA0033 at 25.660 kb on + strand, within SOA0033 at 25.668 kb on - strand, within SOA0033 at 25.668 kb on - strand, within SOA0033 at 25.669 kb on - strand, within SOA0033 at 25.736 kb on + strand at 25.744 kb on - strand at 25.745 kb on + strand at 25.753 kb on - strand at 25.756 kb on + strand at 25.792 kb on + strand, within SOA0034 at 25.800 kb on + strand, within SOA0034 at 25.800 kb on - strand, within SOA0034 at 25.802 kb on + strand, within SOA0034 at 25.817 kb on + strand, within SOA0034 at 25.817 kb on + strand, within SOA0034 at 25.817 kb on + strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.825 kb on - strand, within SOA0034 at 25.827 kb on + strand, within SOA0034 at 25.828 kb on + strand, within SOA0034 at 25.855 kb on + strand, within SOA0034 at 25.863 kb on - strand, within SOA0034 at 25.863 kb on - strand, within SOA0034 at 25.863 kb on - strand, within SOA0034 at 25.863 kb on - strand, within SOA0034 at 25.925 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.930 kb on + strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.938 kb on - strand, within SOA0034 at 25.955 kb on + strand at 25.955 kb on + strand at 25.963 kb on - strand at 25.993 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.029 kb on - strand at 26.034 kb on - strand at 26.034 kb on - strand at 26.034 kb on - strand at 26.034 kb on - strand at 26.034 kb on - strand at 26.038 kb on - strand at 26.068 kb on + strand at 26.068 kb on + strand at 26.068 kb on + strand at 26.068 kb on + strand at 26.115 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 23,815 - SOA0031 0.55 +1.0 23,886 + SOA0031 0.59 +0.3 23,893 - SOA0031 0.59 +1.5 23,987 + SOA0031 0.64 +1.2 24,103 - SOA0031 0.71 +0.8 24,109 + SOA0031 0.71 -0.7 24,109 + SOA0031 0.71 +1.1 24,109 + SOA0031 0.71 -0.2 24,109 + SOA0031 0.71 -1.2 24,109 + SOA0031 0.71 -0.7 24,109 + SOA0031 0.71 +0.2 24,109 + SOA0031 0.71 -0.6 24,117 - SOA0031 0.71 -0.3 24,117 - SOA0031 0.71 -0.0 24,117 - SOA0031 0.71 +0.0 24,117 - SOA0031 0.71 -1.2 24,117 - SOA0031 0.71 +1.2 24,117 - SOA0031 0.71 -0.0 24,160 + SOA0031 0.74 -0.4 24,168 - SOA0031 0.74 +1.2 24,168 - SOA0031 0.74 +0.3 24,221 + SOA0031 0.77 -0.1 24,228 - SOA0031 0.77 +0.2 24,240 - SOA0031 0.78 +0.2 24,287 + SOA0031 0.80 -0.3 24,295 - SOA0031 0.81 -0.2 24,336 + SOA0031 0.83 -0.4 24,348 + SOA0031 0.84 -0.2 24,348 + SOA0031 0.84 -1.0 24,356 - SOA0031 0.84 +0.7 24,356 - SOA0031 0.84 -0.8 24,475 + +0.2 24,510 + +0.1 24,552 - +0.0 24,566 + +0.4 24,567 + +0.5 24,665 - -0.1 24,670 + -0.1 24,670 + -0.4 24,697 - +0.4 24,697 - +0.3 24,697 - -0.2 24,765 - +0.9 24,943 + SOA0032 0.36 -1.1 24,945 + SOA0032 0.37 -0.8 24,951 - SOA0032 0.38 -1.1 24,993 + SOA0032 0.47 -0.6 25,016 - SOA0032 0.52 -1.0 25,030 + SOA0032 0.55 +1.6 25,039 - SOA0032 0.57 -3.0 25,039 - SOA0032 0.57 -2.8 25,046 - SOA0032 0.59 +0.6 25,085 - SOA0032 0.67 -0.0 25,109 - SOA0032 0.73 -1.4 25,111 + SOA0032 0.73 +0.6 25,200 + -0.0 25,214 + +0.2 25,285 + SOA0033 0.10 -0.2 25,287 - SOA0033 0.11 -1.1 25,328 + SOA0033 0.19 +0.1 25,355 + SOA0033 0.25 +0.8 25,355 + SOA0033 0.25 -0.4 25,394 + SOA0033 0.33 -2.7 25,447 + SOA0033 0.43 +0.1 25,447 + SOA0033 0.43 +0.6 25,510 + SOA0033 0.56 -0.8 25,575 - SOA0033 0.70 -2.0 25,575 - SOA0033 0.70 -0.5 25,575 - SOA0033 0.70 -0.8 25,575 - SOA0033 0.70 +0.6 25,579 - SOA0033 0.70 -0.4 25,579 - SOA0033 0.70 -0.7 25,586 + SOA0033 0.72 -0.1 25,586 + SOA0033 0.72 -1.0 25,660 + SOA0033 0.87 -2.2 25,660 + SOA0033 0.87 -0.5 25,668 - SOA0033 0.89 -0.8 25,668 - SOA0033 0.89 -0.7 25,669 - SOA0033 0.89 -3.8 25,736 + -0.2 25,744 - -0.5 25,745 + +2.0 25,753 - -1.0 25,756 + +0.9 25,792 + SOA0034 0.17 -0.6 25,800 + SOA0034 0.21 +0.3 25,800 - SOA0034 0.21 +0.1 25,802 + SOA0034 0.22 -0.1 25,817 + SOA0034 0.28 +0.5 25,817 + SOA0034 0.28 -0.7 25,817 + SOA0034 0.28 +0.5 25,825 - SOA0034 0.32 -0.8 25,825 - SOA0034 0.32 +0.5 25,825 - SOA0034 0.32 +1.3 25,825 - SOA0034 0.32 +0.6 25,825 - SOA0034 0.32 +0.4 25,825 - SOA0034 0.32 -0.1 25,825 - SOA0034 0.32 -0.5 25,827 + SOA0034 0.33 -0.8 25,828 + SOA0034 0.33 +0.2 25,855 + SOA0034 0.45 -0.6 25,863 - SOA0034 0.49 +0.3 25,863 - SOA0034 0.49 -1.2 25,863 - SOA0034 0.49 +3.4 25,863 - SOA0034 0.49 +1.2 25,925 + SOA0034 0.77 -0.8 25,930 + SOA0034 0.79 +0.9 25,930 + SOA0034 0.79 -0.9 25,930 + SOA0034 0.79 +0.5 25,930 + SOA0034 0.79 -0.4 25,930 + SOA0034 0.79 -0.3 25,930 + SOA0034 0.79 +0.6 25,930 + SOA0034 0.79 +0.6 25,930 + SOA0034 0.79 -0.9 25,938 - SOA0034 0.83 +0.1 25,938 - SOA0034 0.83 +1.1 25,938 - SOA0034 0.83 -0.5 25,938 - SOA0034 0.83 +0.5 25,938 - SOA0034 0.83 +0.1 25,938 - SOA0034 0.83 +1.0 25,938 - SOA0034 0.83 +1.6 25,955 + +0.6 25,955 + -1.4 25,963 - +0.7 25,993 - -0.0 26,029 - -0.6 26,029 - +1.6 26,029 - -2.4 26,029 - -0.1 26,029 - +0.3 26,029 - -0.4 26,029 - +0.4 26,029 - +0.6 26,029 - -0.5 26,029 - +0.7 26,034 - +0.6 26,034 - -0.5 26,034 - -0.5 26,034 - +0.3 26,034 - +1.0 26,038 - +0.6 26,068 + -0.3 26,068 + +0.3 26,068 + +2.2 26,068 + +1.9 26,115 - +0.9
Or see this region's nucleotide sequence