Strain Fitness in Shewanella oneidensis MR-1 around SO4692

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,890,476	-		SO4690	0.79	+0.8
4,890,490	+		SO4690	0.80	+1.1
4,890,491	-		SO4690	0.80	+0.6
4,890,491	-		SO4690	0.80	+0.6
4,890,547	+		SO4690	0.84	+0.2
4,890,663	+				-0.4
4,890,663	+				+0.8
4,890,668	+				-0.2
4,890,668	+				-0.3
4,890,759	-				-1.7
4,890,813	-				+0.7
4,890,841	-				-0.5
4,890,864	-				+0.1
4,890,940	+				+0.8
4,890,949	+				-0.0
4,891,062	-				+0.1
4,891,095	+				+0.0
4,891,095	+				+0.8
4,891,103	-				+0.6
4,891,128	+				-0.1
4,891,128	+				-0.4
4,891,129	+				+0.0
4,891,139	+				+0.4
4,891,144	+				-0.8
4,891,144	+				-0.3
4,891,144	+				-1.4
4,891,147	-				-0.7
4,891,152	-				-0.9
4,891,164	-				-0.2
4,891,325	+				-0.1
4,891,343	-				-0.2
4,891,348	-				+0.1
4,891,435	+				-1.2
4,891,435	+				+0.1
4,891,443	-				-0.1
4,891,632	+				-1.8
4,891,646	-				-0.7
4,891,735	-				-1.7
4,892,080	+		SO4692	0.19	-0.4
4,892,161	+		SO4692	0.22	-1.6
4,892,238	-		SO4692	0.24	-1.9
4,892,268	-		SO4692	0.25	-0.5
4,892,286	+		SO4692	0.26	+0.7
4,892,286	+		SO4692	0.26	-3.0
4,892,348	+		SO4692	0.28	-1.3
4,892,356	-		SO4692	0.28	-0.9
4,892,366	-		SO4692	0.28	-2.3
4,892,487	-		SO4692	0.32	-1.6
4,892,487	-		SO4692	0.32	-0.5
4,892,538	-		SO4692	0.34	-1.3
4,892,677	+		SO4692	0.38	-0.7
4,892,693	-		SO4692	0.39	-0.9
4,892,724	-		SO4692	0.40	+0.3
4,892,732	-		SO4692	0.40	-0.9
4,892,757	+		SO4692	0.41	-1.5
4,892,757	+		SO4692	0.41	-1.2
4,892,759	-		SO4692	0.41	-1.7
4,892,993	+		SO4692	0.48	-1.9
4,893,001	-		SO4692	0.49	-1.5
4,893,001	-		SO4692	0.49	-1.2
4,893,001	-		SO4692	0.49	-2.4
4,893,012	-		SO4692	0.49	-2.3
4,893,104	-		SO4692	0.52	+0.5
4,893,123	-		SO4692	0.53	-2.5
4,893,329	-		SO4692	0.59	-1.3
4,893,590	-		SO4692	0.67	-1.4
4,893,595	-		SO4692	0.68	-0.7
4,893,659	-		SO4692	0.70	-0.8
4,893,804	-		SO4692	0.74	-1.2
4,893,806	-		SO4692	0.74	-2.3
4,893,806	-		SO4692	0.74	-2.9
4,893,878	+		SO4692	0.77	-1.5
4,893,878	+		SO4692	0.77	-2.2
4,893,878	+		SO4692	0.77	-0.5
4,893,886	-		SO4692	0.77	+1.1
4,893,886	-		SO4692	0.77	-0.6
4,894,004	+		SO4692	0.81	-1.3
4,894,012	-		SO4692	0.81	+0.1
4,894,012	-		SO4692	0.81	-2.3
4,894,034	+		SO4692	0.82	-1.3
4,894,103	+		SO4692	0.84	-2.0
4,894,149	+		SO4692	0.85	-1.7
4,894,299	-				-0.9
4,894,340	-				-0.9
4,894,378	+				-0.9
4,894,434	-				-1.5
4,894,442	-				-0.8
4,894,466	+				-2.2
4,894,470	-				-0.5
4,894,474	-				+1.1
4,894,479	-				-0.3
4,894,501	-				-0.5
4,894,617	+				-1.3
4,894,620	-				-1.2
4,894,625	-				-1.5
4,894,625	-				-1.3
4,894,625	-				-0.5
4,894,698	+				-0.7
4,894,708	-				-1.6
4,894,718	+				-1.0
4,894,726	-				-0.8
4,894,726	-				-1.4
4,894,751	+		SO4693	0.11	+0.3
4,894,751	+		SO4693	0.11	-1.1
4,894,759	-		SO4693	0.12	+0.6
4,894,821	-		SO4693	0.17	-1.1
4,894,821	-		SO4693	0.17	+0.5
4,894,896	+		SO4693	0.24	-1.6
4,894,898	+		SO4693	0.24	-0.1
4,894,921	-		SO4693	0.26	-1.1
4,895,011	-		SO4693	0.34	-1.3
4,895,166	+		SO4693	0.48	-2.3
4,895,237	+		SO4693	0.54	-1.3
4,895,246	-		SO4693	0.54	-1.5
4,895,263	-		SO4693	0.56	-0.6
4,895,305	-		SO4693	0.60	-1.8
4,895,395	+		SO4693	0.67	-0.6
4,895,395	+		SO4693	0.67	-0.7
4,895,395	+		SO4693	0.67	-1.1
4,895,403	-		SO4693	0.68	-1.3
4,895,403	-		SO4693	0.68	-1.8
4,895,412	+		SO4693	0.69	-1.6
4,895,487	-		SO4693	0.75	+1.1
4,895,528	-		SO4693	0.79	-0.9
4,895,592	+		SO4693	0.85	-2.8