Strain Fitness in Shewanella oneidensis MR-1 around SO4267

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,443,285	+		SO4266	0.39	-0.4
4,443,312	-		SO4266	0.41	+0.4
4,443,350	-		SO4266	0.45	-0.4
4,443,355	+		SO4266	0.45	-0.4
4,443,374	+		SO4266	0.47	+0.7
4,443,383	+		SO4266	0.48	-0.5
4,443,383	+		SO4266	0.48	+0.4
4,443,552	+		SO4266	0.63	+0.5
4,443,575	+		SO4266	0.65	-0.4
4,443,584	-		SO4266	0.66	+0.0
4,443,584	-		SO4266	0.66	+1.0
4,443,644	-				+1.0
4,443,691	-		SO4266	0.75	+0.5
4,443,766	+		SO4266	0.82	-1.0
4,443,774	-		SO4266	0.82	-0.4
4,443,781	-		SO4266	0.83	-0.3
4,443,898	-				-0.9
4,443,931	+				-0.2
4,444,024	-				+0.2
4,444,127	+				-0.1
4,444,127	+				-1.3
4,444,135	-				-0.3
4,444,135	-				+0.2
4,444,197	+				+0.5
4,444,217	+				+0.7
4,444,217	+				-1.3
4,444,225	-				+0.0
4,444,232	+				-0.0
4,444,232	+				+0.3
4,444,242	+				+0.4
4,444,251	+				+1.7
4,444,296	+				+0.1
4,444,341	+				-0.5
4,444,349	-				-0.5
4,444,351	-				-0.3
4,444,391	+				-0.1
4,444,443	+				+0.4
4,444,494	+				-0.5
4,444,502	-				+0.5
4,444,502	-				-0.6
4,444,510	+				+0.8
4,444,518	-				-1.2
4,444,518	-				+0.5
4,444,528	-				+0.8
4,444,622	+				-0.3
4,444,630	-				+0.6
4,444,657	+	hsdR-2	SO4267	0.11	+0.1
4,444,699	-	hsdR-2	SO4267	0.12	+0.8
4,444,703	+	hsdR-2	SO4267	0.12	+0.2
4,444,711	-	hsdR-2	SO4267	0.12	+0.8
4,444,711	-	hsdR-2	SO4267	0.12	+0.9
4,444,752	-	hsdR-2	SO4267	0.13	-1.3
4,444,822	+	hsdR-2	SO4267	0.15	-0.9
4,444,830	-	hsdR-2	SO4267	0.16	+2.4
4,444,830	-	hsdR-2	SO4267	0.16	+1.9
4,444,837	+	hsdR-2	SO4267	0.16	+1.8
4,444,852	-	hsdR-2	SO4267	0.16	-0.9
4,444,856	-	hsdR-2	SO4267	0.16	+0.8
4,444,890	+	hsdR-2	SO4267	0.17	-1.6
4,444,971	+	hsdR-2	SO4267	0.20	-0.2
4,444,979	-	hsdR-2	SO4267	0.20	-0.3
4,445,009	-	hsdR-2	SO4267	0.21	-0.2
4,445,018	+	hsdR-2	SO4267	0.21	+0.0
4,445,095	+	hsdR-2	SO4267	0.23	+1.0
4,445,111	+	hsdR-2	SO4267	0.23	-0.2
4,445,139	+	hsdR-2	SO4267	0.24	+0.3
4,445,147	-	hsdR-2	SO4267	0.24	+0.5
4,445,235	-	hsdR-2	SO4267	0.27	-0.4
4,445,290	+	hsdR-2	SO4267	0.28	-1.2
4,445,327	+	hsdR-2	SO4267	0.30	+0.7
4,445,409	+	hsdR-2	SO4267	0.32	-0.0
4,445,464	+	hsdR-2	SO4267	0.33	+0.0
4,445,578	+	hsdR-2	SO4267	0.37	-0.1
4,445,640	-	hsdR-2	SO4267	0.38	-1.5
4,445,641	-	hsdR-2	SO4267	0.38	+0.5
4,445,677	+	hsdR-2	SO4267	0.39	+0.1
4,445,829	-	hsdR-2	SO4267	0.44	-0.3
4,445,892	+	hsdR-2	SO4267	0.45	-0.1
4,445,943	-	hsdR-2	SO4267	0.47	-2.9
4,446,079	+	hsdR-2	SO4267	0.51	-0.2
4,446,143	+	hsdR-2	SO4267	0.52	+0.1
4,446,146	-	hsdR-2	SO4267	0.52	+0.0
4,446,146	-	hsdR-2	SO4267	0.52	+0.4
4,446,153	-	hsdR-2	SO4267	0.53	-0.3
4,446,217	-	hsdR-2	SO4267	0.54	-0.9
4,446,261	-	hsdR-2	SO4267	0.56	-0.9
4,446,281	-	hsdR-2	SO4267	0.56	+0.0
4,446,365	+	hsdR-2	SO4267	0.59	-1.0
4,446,373	-	hsdR-2	SO4267	0.59	-0.9
4,446,405	+	hsdR-2	SO4267	0.60	+0.3
4,446,413	-	hsdR-2	SO4267	0.60	-1.8
4,446,413	-	hsdR-2	SO4267	0.60	+0.3
4,446,483	-	hsdR-2	SO4267	0.62	+0.5
4,446,579	+	hsdR-2	SO4267	0.65	+0.0
4,446,587	-	hsdR-2	SO4267	0.65	+1.0
4,446,589	+	hsdR-2	SO4267	0.65	+0.6
4,446,589	+	hsdR-2	SO4267	0.65	+0.3
4,446,597	-	hsdR-2	SO4267	0.65	-2.9
4,446,615	+	hsdR-2	SO4267	0.66	+0.3
4,446,672	+	hsdR-2	SO4267	0.67	+1.7
4,446,708	+	hsdR-2	SO4267	0.68	+0.7
4,446,742	+	hsdR-2	SO4267	0.69	-0.6
4,446,757	+	hsdR-2	SO4267	0.70	+0.2
4,446,765	-	hsdR-2	SO4267	0.70	+0.8
4,446,773	-	hsdR-2	SO4267	0.70	+0.7
4,446,791	-	hsdR-2	SO4267	0.71	-0.2
4,446,852	-	hsdR-2	SO4267	0.72	+0.8
4,446,865	-	hsdR-2	SO4267	0.73	-0.3
4,446,896	-	hsdR-2	SO4267	0.74	+0.0
4,446,896	-	hsdR-2	SO4267	0.74	+1.1
4,446,906	-	hsdR-2	SO4267	0.74	+0.0
4,446,986	+	hsdR-2	SO4267	0.76	+0.2
4,447,008	-	hsdR-2	SO4267	0.77	+0.6
4,447,030	-	hsdR-2	SO4267	0.77	-1.1
4,447,030	-	hsdR-2	SO4267	0.77	-1.8
4,447,134	-	hsdR-2	SO4267	0.80	+1.0
4,447,135	-	hsdR-2	SO4267	0.80	+0.4
4,447,180	-	hsdR-2	SO4267	0.81	-2.9
4,447,191	+	hsdR-2	SO4267	0.82	+0.2
4,447,191	+	hsdR-2	SO4267	0.82	-0.2
4,447,241	-	hsdR-2	SO4267	0.83	-0.1
4,447,246	-	hsdR-2	SO4267	0.83	+0.2
4,447,277	+	hsdR-2	SO4267	0.84	-0.1
4,447,333	+	hsdR-2	SO4267	0.86	+0.1
4,447,367	+	hsdR-2	SO4267	0.87	-1.2
4,447,398	+	hsdR-2	SO4267	0.88	+0.3
4,447,442	+	hsdR-2	SO4267	0.89	-1.0
4,447,442	+	hsdR-2	SO4267	0.89	+0.1
4,447,465	+	hsdR-2	SO4267	0.89	+0.5
4,447,477	+	hsdR-2	SO4267	0.90	+0.1
4,447,477	+	hsdR-2	SO4267	0.90	-0.5
4,447,477	+	hsdR-2	SO4267	0.90	+0.8
4,447,478	+	hsdR-2	SO4267	0.90	-0.3
4,447,536	+				+0.1
4,447,576	+				+0.6
4,447,577	+				+0.1
4,447,583	+				+0.2
4,447,584	-				-2.9
4,447,584	-				-1.0
4,447,584	-				-0.0
4,447,584	-				-0.6
4,447,585	-				-0.5
4,447,665	+				+0.7
4,447,718	-				-0.9
4,447,735	+				-0.6
4,447,743	-				-0.6
4,447,743	-				+0.2
4,447,746	-				-0.4
4,447,756	-				-0.4
4,447,762	+				-0.4
4,447,822	-				+0.0
4,447,823	-				-0.2
4,447,837	-				-0.6