Strain Fitness in Shewanella oneidensis MR-1 around SO4232

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,407,670	-		SO4230.1	0.46	+0.3
4,407,717	-		SO4230.1	0.51	+0.7
4,407,729	-		SO4230.1	0.52	+0.7
4,407,730	+		SO4230.1	0.52	-0.8
4,407,772	+		SO4230.1	0.57	-0.3
4,407,798	-		SO4230.1	0.60	-0.0
4,407,803	-		SO4230.1	0.60	-1.0
4,407,824	+		SO4230.1	0.62	-1.2
4,407,867	+		SO4230.1	0.67	+0.3
4,407,916	+		SO4230.1	0.72	-0.0
4,407,916	+		SO4230.1	0.72	+0.3
4,407,916	+		SO4230.1	0.72	+0.2
4,407,921	+		SO4230.1	0.72	-1.0
4,407,923	-		SO4230.1	0.72	-1.0
4,407,924	-		SO4230.1	0.73	-0.2
4,407,978	-		SO4230.1	0.78	+0.3
4,407,978	-		SO4230.1	0.78	+0.0
4,407,978	-		SO4230.1	0.78	+0.5
4,407,978	-		SO4230.1	0.78	+1.6
4,407,978	-		SO4230.1	0.78	-0.6
4,408,014	-		SO4230.1	0.82	-0.5
4,408,028	-		SO4230.1	0.83	+1.0
4,408,034	+		SO4230.1	0.84	-0.7
4,408,039	+		SO4230.1	0.84	-0.7
4,408,155	+				+0.1
4,408,220	-		SO_4231	0.11	-1.3
4,408,232	+		SO_4231	0.15	+1.4
4,408,232	+		SO_4231	0.15	+0.5
4,408,232	+		SO_4231	0.15	-0.0
4,408,240	-		SO_4231	0.17	-0.6
4,408,240	-		SO_4231	0.17	-1.3
4,408,256	-		SO_4231	0.22	-0.9
4,408,256	-		SO_4231	0.22	-0.6
4,408,256	-		SO_4231	0.22	+0.2
4,408,258	+		SO_4231	0.23	-1.3
4,408,266	-		SO_4231	0.25	+0.1
4,408,336	+		SO_4231	0.47	+1.1
4,408,347	+		SO_4231	0.50	+0.5
4,408,364	-		SO_4231	0.55	-0.3
4,408,497	-				+0.3
4,408,683	-				+0.2
4,408,828	-		SO4232	0.19	-0.4
4,408,840	+		SO4232	0.20	-0.4
4,408,854	-		SO4232	0.21	-0.6
4,409,001	-		SO4232	0.33	-1.1
4,409,051	+		SO4232	0.36	-0.3
4,409,059	-		SO4232	0.37	+0.3
4,409,087	-		SO4232	0.39	+2.4
4,409,088	+		SO4232	0.39	+0.2
4,409,164	+		SO4232	0.45	-1.5
4,409,182	+		SO4232	0.46	+0.1
4,409,190	-		SO4232	0.47	-0.4
4,409,204	+		SO4232	0.48	+0.1
4,409,335	-		SO4232	0.58	-0.9
4,409,350	+		SO4232	0.59	+0.2
4,409,359	-		SO4232	0.60	-0.2
4,409,361	+		SO4232	0.60	-0.1
4,409,361	+		SO4232	0.60	-2.6
4,409,387	+		SO4232	0.62	-2.9
4,409,494	+		SO4232	0.70	+0.6
4,409,520	-		SO4232	0.72	+0.0
4,409,520	-		SO4232	0.72	-0.7
4,409,525	-		SO4232	0.72	-0.3
4,409,628	-		SO4232	0.80	-0.2
4,409,635	-		SO4232	0.81	-0.6
4,409,636	-		SO4232	0.81	-1.2
4,409,636	-		SO4232	0.81	-0.8
4,409,704	+		SO4232	0.86	+0.6
4,409,733	-		SO4232	0.88	-1.1
4,409,776	+				+0.4
4,409,776	+				-0.3
4,409,776	+				+0.2
4,409,783	-				+0.0
4,409,784	-				+1.0
4,409,805	+				+0.6
4,409,819	-				+1.0
4,409,847	-				+0.6
4,409,863	-				+0.1
4,410,477	+				+0.4
4,410,477	+				-1.1
4,410,482	+	leuD	SO4233	0.11	+0.8
4,410,485	-	leuD	SO4233	0.11	-1.2
4,410,485	-	leuD	SO4233	0.11	-1.1
4,410,485	-	leuD	SO4233	0.11	-0.5
4,410,491	+	leuD	SO4233	0.12	+0.2
4,410,491	+	leuD	SO4233	0.12	+0.1
4,410,681	-	leuD	SO4233	0.44	-0.9
4,410,834	+	leuD	SO4233	0.69	+0.1
4,410,837	-	leuD	SO4233	0.69	-0.6
4,410,837	-	leuD	SO4233	0.69	-0.2