Strain Fitness in Shewanella oneidensis MR-1 around SO3935

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,078,811	-				-0.8
4,078,870	-		SO3934	0.12	-1.3
4,078,907	+		SO3934	0.17	+0.2
4,078,907	+		SO3934	0.17	-1.0
4,078,915	-		SO3934	0.18	-1.3
4,078,915	-		SO3934	0.18	+0.5
4,078,915	-		SO3934	0.18	+0.2
4,078,915	-		SO3934	0.18	-0.4
4,078,921	-		SO3934	0.19	-0.3
4,079,124	+		SO3934	0.46	+1.1
4,079,150	-		SO3934	0.50	+0.4
4,079,150	-		SO3934	0.50	-0.7
4,079,193	-		SO3934	0.56	+0.4
4,079,200	+		SO3934	0.57	+0.5
4,079,318	-		SO3934	0.72	+1.6
4,079,325	-		SO3934	0.73	+0.2
4,079,468	-				-0.3
4,079,485	-				+0.5
4,079,485	-				+0.3
4,079,640	+				+0.0
4,079,648	-				-0.7
4,079,742	+				-0.3
4,079,750	-				+1.1
4,079,800	+	vacB	SO3935	0.11	-0.6
4,079,804	-	vacB	SO3935	0.12	-2.3
4,079,808	-	vacB	SO3935	0.12	+0.6
4,079,829	-	vacB	SO3935	0.13	-2.7
4,079,829	-	vacB	SO3935	0.13	-1.0
4,079,928	-	vacB	SO3935	0.17	-1.8
4,079,928	-	vacB	SO3935	0.17	-0.4
4,080,081	+	vacB	SO3935	0.23	-1.6
4,080,180	+	vacB	SO3935	0.27	-1.1
4,080,430	+	vacB	SO3935	0.37	-1.3
4,080,430	+	vacB	SO3935	0.37	-2.6
4,080,438	-	vacB	SO3935	0.38	-1.5
4,080,438	-	vacB	SO3935	0.38	-1.7
4,080,516	+	vacB	SO3935	0.41	+0.1
4,080,797	+	vacB	SO3935	0.53	-1.1
4,080,891	+	vacB	SO3935	0.56	+0.9
4,080,952	+	vacB	SO3935	0.59	-0.6
4,080,960	-	vacB	SO3935	0.59	-0.4
4,081,010	+	vacB	SO3935	0.61	-0.8
4,081,081	-	vacB	SO3935	0.64	+0.3
4,081,085	-	vacB	SO3935	0.64	-1.1
4,081,249	-	vacB	SO3935	0.71	-0.9
4,081,553	-	vacB	SO3935	0.84	-0.6
4,081,655	-	vacB	SO3935	0.88	-0.3
4,081,676	+	vacB	SO3935	0.89	+0.2
4,081,789	-				-2.7
4,081,814	+				-2.4
4,082,011	+				-0.3
4,082,050	+				-1.7
4,082,058	-	motX	SO3936	0.11	-1.0
4,082,121	+	motX	SO3936	0.21	-2.3
4,082,121	+	motX	SO3936	0.21	-2.5
4,082,142	+	motX	SO3936	0.25	-2.0
4,082,149	-	motX	SO3936	0.26	-1.3
4,082,151	+	motX	SO3936	0.26	-4.5
4,082,151	+	motX	SO3936	0.26	-2.1
4,082,159	-	motX	SO3936	0.27	-1.1
4,082,308	-	motX	SO3936	0.51	-2.4
4,082,313	-	motX	SO3936	0.52	-0.2
4,082,318	-	motX	SO3936	0.53	-1.9
4,082,331	+	motX	SO3936	0.55	-1.8
4,082,337	+	motX	SO3936	0.56	-1.4
4,082,505	-	motX	SO3936	0.83	-0.7
4,082,560	-				-1.1
4,082,572	+				-3.1
4,082,599	+				-1.3
4,082,791	+				-0.5
4,082,792	+				+0.3
4,082,937	+	purA	SO3937	0.14	-0.0
4,082,947	+	purA	SO3937	0.15	-1.4