Strain Fitness in Shewanella oneidensis MR-1 around SO3917

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalr and dnaB are separated by 76 nucleotidesdnaB and SO3918 are separated by 125 nucleotides SO3916: alr - alanine racemase, biosynthetic (NCBI ptt file), at 4,062,285 to 4,063,361 alr SO3917: dnaB - replicative DNA helicase (NCBI ptt file), at 4,063,438 to 4,064,844 dnaB SO3918: SO3918 - conserved hypothetical protein (NCBI ptt file), at 4,064,970 to 4,067,168 SO3918 Position (kb) 4063 4064 4065Strain fitness (log2 ratio) -1 0 1at 4064.922 kb on - strandat 4064.922 kb on - strandat 4065.005 kb on - strandat 4065.005 kb on - strandat 4065.005 kb on - strandat 4065.005 kb on - strandat 4065.187 kb on + strandat 4065.238 kb on - strand, within SO3918at 4065.246 kb on + strand, within SO3918at 4065.426 kb on - strand, within SO3918at 4065.486 kb on + strand, within SO3918at 4065.489 kb on + strand, within SO3918at 4065.563 kb on + strand, within SO3918at 4065.790 kb on - strand, within SO3918at 4065.790 kb on - strand, within SO3918at 4065.820 kb on + strand, within SO3918at 4065.820 kb on + strand, within SO3918at 4065.820 kb on + strand, within SO3918at 4065.823 kb on - strand, within SO3918at 4065.828 kb on - strand, within SO3918

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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4,064,922 - +1.1
4,064,922 - -0.1
4,065,005 - +0.3
4,065,005 - +0.1
4,065,005 - +0.3
4,065,005 - +0.3
4,065,187 + -0.4
4,065,238 - SO3918 0.12 -1.0
4,065,246 + SO3918 0.13 -0.1
4,065,426 - SO3918 0.21 +0.9
4,065,486 + SO3918 0.23 +0.1
4,065,489 + SO3918 0.24 +0.7
4,065,563 + SO3918 0.27 +0.6
4,065,790 - SO3918 0.37 -0.5
4,065,790 - SO3918 0.37 -0.3
4,065,820 + SO3918 0.39 +0.2
4,065,820 + SO3918 0.39 +1.6
4,065,820 + SO3918 0.39 -0.4
4,065,823 - SO3918 0.39 -0.2
4,065,828 - SO3918 0.39 -1.2

Or see this region's nucleotide sequence