Strain Fitness in Shewanella oneidensis MR-1 around SO3917
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
4,064,922 | - | +1.1 | |||
4,064,922 | - | -0.1 | |||
4,065,005 | - | +0.3 | |||
4,065,005 | - | +0.1 | |||
4,065,005 | - | +0.3 | |||
4,065,005 | - | +0.3 | |||
4,065,187 | + | -0.4 | |||
4,065,238 | - | SO3918 | 0.12 | -1.0 | |
4,065,246 | + | SO3918 | 0.13 | -0.1 | |
4,065,426 | - | SO3918 | 0.21 | +0.9 | |
4,065,486 | + | SO3918 | 0.23 | +0.1 | |
4,065,489 | + | SO3918 | 0.24 | +0.7 | |
4,065,563 | + | SO3918 | 0.27 | +0.6 | |
4,065,790 | - | SO3918 | 0.37 | -0.5 | |
4,065,790 | - | SO3918 | 0.37 | -0.3 | |
4,065,820 | + | SO3918 | 0.39 | +0.2 | |
4,065,820 | + | SO3918 | 0.39 | +1.6 | |
4,065,820 | + | SO3918 | 0.39 | -0.4 | |
4,065,823 | - | SO3918 | 0.39 | -0.2 | |
4,065,828 | - | SO3918 | 0.39 | -1.2 |
Or see this region's nucleotide sequence