Strain Fitness in Shewanella oneidensis MR-1 around SO3915

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,060,645	+		SO3914	0.80	-0.2
4,060,645	+		SO3914	0.80	-0.2
4,060,731	+		SO3914	0.84	-0.2
4,060,739	-		SO3914	0.84	-0.3
4,060,747	-		SO3914	0.85	-2.3
4,060,780	-		SO3914	0.86	-0.7
4,060,824	-		SO3914	0.88	-0.2
4,060,873	-				+0.0
4,060,931	+				-0.4
4,060,938	+				-0.1
4,061,014	+				-0.2
4,061,450	+				-0.8
4,061,461	+				+0.4
4,061,469	-				-0.1
4,061,532	+				+1.9
4,061,540	-				-0.2
4,061,610	-				+0.2
4,061,612	+				+0.6
4,061,612	+				-0.9
4,061,614	-				-0.8
4,061,620	-				-0.3
4,061,620	-				+0.1
4,061,620	-				-0.1
4,061,627	-				-0.2
4,061,707	+		SO3915	0.14	+0.5
4,061,707	+		SO3915	0.14	+0.2
4,061,707	+		SO3915	0.14	+0.4
4,061,707	+		SO3915	0.14	-1.6
4,061,707	+		SO3915	0.14	-0.1
4,061,715	-		SO3915	0.15	+0.7
4,061,715	-		SO3915	0.15	+2.0
4,061,715	-		SO3915	0.15	+1.2
4,061,715	-		SO3915	0.15	+0.2
4,061,806	-		SO3915	0.35	+0.6
4,062,003	+		SO3915	0.77	+1.9
4,062,011	-		SO3915	0.79	+0.3
4,062,103	+				-0.6
4,062,139	+				+0.1
4,062,146	-				+0.4
4,062,147	-				+1.0
4,062,177	-				-1.7
4,062,216	-				-1.1
4,062,222	+				+0.3